Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019416.1

Orthogroup ID

OG0012214

Physical Location & Seq

Genomic Coordinates Reverse (-)

5226 .. 7681

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019416.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgggaaagcgagacaagaaacagagacaccaacacagaacctcccacagagctgcctttcactacactgaagaaggcgaagaaggcgtcagctttgaaagtcatgctgcttccaagttcagtctttctgaagaagaagaagaagaagaaaaagacgaagatgaagaagaagacgaagacgaagacgaagcagagattgaggaaactgataaatacccatcaaaagatatgccctcaaagtttcttctttatcaacaatctgtgcagtcgccaaaaggagacataagctatttgcagaagttctttttgatgtatgtgggtggaaggcaacctctccatctccaagaagatttttgtggcactgctcttcttagtgcagaatggctccgcacagactctagaaggactgctgtagggttggatttggaccttgaagcgctagaatggtgcatggagaacaacataaataagatagggtctgatgggtattccagaatatccctcttccatgggaatgtcttgcaacctcttgaggccaagctaattgagtttgagccccaggagctgataagaaacatttcactctctgaaaacaaagatgtttctgagagtggtggacttgaagggggttcttcttctccacataatgagaagtacatgaggaaccatccattgcctgctagagacatagtgtgtgcttttaactacagctgttgctgtcttcatcgacgtgctgaactggttttgtatttcaagcatgttcttgatgttttgtcaaaaaaaggtggaatatttgtaatggatttatatggtggtacatcatcagagtgcaagctaaggcttcaaaggaaatttgccaatttcacgtatttttgggagcaagctgaatttgatatcattgagcgcaaaacaaggattagtctccatttccatctcaaaaagcagcagaagaaacttcgacatgcattttcatacagctggaggctgtggtcattgcctgagattaaggactgcttagaagaggcaggttttcaatctgtccacttttggttgcgtgagatgcaagacaccagagaaatcagaaaaacagaaggttttggtgttgggcgagacataaaatatgaagaggttacaaaatttcagcaacaagatgcttggaatgcatatgtcgtagctgttgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

45.97

Weight (kDa)

5.33

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27590
fragaria_vesca	FvH4_3g24630 FvH4_3g24630
malus_domestica	MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica	Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis	pycom03g09680
rosa_chinensis	RchiOBHm_Chr5g0044201
rosa_laevigata	RLG00000034252
rosa_multiflora	Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036840
rosa_rugosa	Rorug05G0211500 Rorug05G0211600.1
rosa_samantha	Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana	Rw5G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1016
AciI	CCGC	1 cut(s)	388
AcsI	RAATTY	3 cut(s)	851, 887, 1136
AcuI	CTGAAG	2 cut(s)	90, 150
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	656, 817
AfeI	AGCGCT	1 cut(s)	438
AgsI	TTSAA	6 cut(s)	98, 434, 623, 754, 845, 1034
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	558
Alw26I	GTCTC	6 cut(s)	6, 19, 273, 678, 926, 1104
AlwNI	CAGNNNCTG	1 cut(s)	565
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	53, 107, 943
ApoI	RAATTY	3 cut(s)	851, 887, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	577
AspLEI	GCGC	2 cut(s)	439, 906
AspS9I	GGNCC	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	4 cut(s)	177, 183, 189, 713
BbvI	GCAGC	3 cut(s)	40, 94, 955
BccI	CCATC	5 cut(s)	226, 345, 476, 675, 939
BciT130I	CCWGG	1 cut(s)	560
BcoDI	GTCTC	6 cut(s)	6, 19, 273, 678, 926, 1104
BfaI	CTAG	4 cut(s)	399, 440, 681, 1183
BfmI	CTRYAG	2 cut(s)	411, 706
BfoI	RGCGCY	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	1016
BisI	GCNGC	3 cut(s)	54, 108, 944
BlsI	GCNGC	3 cut(s)	55, 109, 945
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	386, 665
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	1050, 1141
BpiI	GAAGAC	4 cut(s)	177, 183, 189, 713
BpmI	CTGGAG	1 cut(s)	1000
Bpu10I	CCTNAGC	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	867
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	508, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	744
Bse3DI	GCAATG	2 cut(s)	671, 992
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	508, 558
BseGI	GGATG	1 cut(s)	667
BseMI	GCAATG	2 cut(s)	671, 992
BseMII	CTCAG	2 cut(s)	597, 990
BseNI	ACTGG	1 cut(s)	744
BseXI	GCAGC	3 cut(s)	40, 94, 955
BsgI	GTGCAG	2 cut(s)	284, 396
BshFI	GGCC	1 cut(s)	536
BsmAI	GTCTC	6 cut(s)	6, 19, 273, 678, 926, 1104
BsmI	GAATGC	1 cut(s)	1165
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	2 cut(s)	598, 991
BspLI	GGNNCC	2 cut(s)	386, 665
BspMI	ACCTGC	1 cut(s)	1016
BspQI	GCTCTTC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	671, 992
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	508, 558
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	560
Bst6I	CTCTTC	4 cut(s)	372, 509, 1014, 1119
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	3 cut(s)	678, 833, 882
BstDEI	CTNAG	5 cut(s)	371, 606, 836, 999, 1015
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	1 cut(s)	667
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	439, 906
BstMAI	GTCTC	6 cut(s)	6, 19, 273, 678, 926, 1104
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 562, 1060, 1160
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	2 cut(s)	761, 965
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	2 cut(s)	411, 706
BstV1I	GCAGC	3 cut(s)	40, 94, 955
BstV2I	GAAGAC	4 cut(s)	177, 183, 189, 713
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	66, 360
BveI	ACCTGC	1 cut(s)	1016
Cac8I	GCNNGC	3 cut(s)	678, 833, 882
CaiI	CAGNNNCTG	1 cut(s)	565
CfoI	GCGC	2 cut(s)	439, 906
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	655, 816
CviAII	CATG	6 cut(s)	104, 451, 509, 658, 758, 962
CviQI	GTAC	2 cut(s)	655, 816
DdeI	CTNAG	5 cut(s)	371, 606, 836, 999, 1015
Eam1104I	CTCTTC	4 cut(s)	372, 509, 1014, 1119
EarI	CTCTTC	4 cut(s)	372, 509, 1014, 1119
Eco130I	CCWWGG	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	438
Eco57I	CTGAAG	2 cut(s)	90, 150
EcoRII	CCWGG	1 cut(s)	558
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	2 cut(s)	967, 1165
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	6 cut(s)	107, 454, 512, 661, 761, 965
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FatI	CATG	6 cut(s)	103, 450, 508, 657, 757, 961
FauNDI	CATATG	1 cut(s)	1165
Fnu4HI	GCNGC	3 cut(s)	54, 108, 944
FokI	GGATG	1 cut(s)	654
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	3 cut(s)	54, 108, 944
FspBI	CTAG	4 cut(s)	399, 440, 681, 1183
GlaI	GCGC	2 cut(s)	438, 905
GluI	GCNGC	3 cut(s)	54, 108, 944
GsuI	CTGGAG	1 cut(s)	1000
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	536
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	439, 906
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	107, 454, 512, 661, 761, 965
Hin6I	GCGC	2 cut(s)	437, 904
HinP1I	GCGC	2 cut(s)	437, 904
HinfI	GANTC	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	617, 1042
Hpy188I	TCNGA	6 cut(s)	130, 481, 589, 607, 826, 1082
Hpy188III	TCNNGA	4 cut(s)	399, 492, 530, 764
Hpy8I	GTNNAC	2 cut(s)	617, 1042
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	6 cut(s)	68, 77, 318, 396, 617, 1085
HpyCH4IV	ACGT	2 cut(s)	730, 866
HpyCH4V	TGCA	9 cut(s)	265, 295, 377, 450, 523, 831, 965, 1063, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 562, 1060, 1160
HpyF3I	CTNAG	5 cut(s)	371, 606, 836, 999, 1015
HpySE526I	ACGT	2 cut(s)	730, 866
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	107, 454, 512, 661, 761, 965
HspAI	GCGC	2 cut(s)	437, 904
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	3 cut(s)	390, 562, 877
LpnPI	CCDG	9 cut(s)	505, 545, 572, 690, 725, 964, 1011, 1011, 1084
Lsp1109I	GCAGC	3 cut(s)	40, 94, 955
LweI	GCATC	2 cut(s)	1050, 1141
MaeI	CTAG	4 cut(s)	399, 440, 681, 1183
MaeII	ACGT	2 cut(s)	730, 866
MaeIII	GTNAC	1 cut(s)	1129
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	5 cut(s)	543, 851, 859, 887, 1136
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	399
Mph1103I	ATGCAT	2 cut(s)	967, 1165
MroXI	GAANNNNTTC	1 cut(s)	577
MseI	TTAA	2 cut(s)	702, 1005
MslI	CAYNNNNRTG	3 cut(s)	513, 729, 826
MspA1I	CMGCKG	2 cut(s)	711, 978
MspR9I	CCNGG	1 cut(s)	560
Mva1269I	GAATGC	1 cut(s)	1165
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	84, 562, 1060, 1160
NcoI	CCATGG	1 cut(s)	508
NdeI	CATATG	1 cut(s)	1165
NlaIII	CATG	6 cut(s)	107, 454, 512, 661, 761, 965
NlaIV	GGNNCC	2 cut(s)	386, 665
NsiI	ATGCAT	2 cut(s)	967, 1165
NspI	RCATGY	2 cut(s)	761, 965
PciSI	GCTCTTC	1 cut(s)	372
PctI	GAATGC	1 cut(s)	1165
PdmI	GAANNNNTTC	1 cut(s)	577
PkrI	GCNGC	3 cut(s)	55, 109, 945
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	1 cut(s)	867
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	386, 665
PspPI	GGNCC	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	565
PvuII	CAGCTG	2 cut(s)	711, 978
RsaI	GTAC	2 cut(s)	656, 817
RsaNI	GTAC	2 cut(s)	655, 816
RseI	CAYNNNNRTG	3 cut(s)	513, 729, 826
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	702, 1005
SatI	GCNGC	3 cut(s)	54, 108, 944
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	1050, 1141
SfcI	CTRYAG	2 cut(s)	411, 706
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	513, 729, 826
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	5 cut(s)	543, 851, 859, 887, 1136
SsiI	CCGC	1 cut(s)	388
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	4 cut(s)	399, 440, 681, 1183
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	508
TaiI	ACGT	2 cut(s)	733, 869
TaqI	TCGA	2 cut(s)	727, 958
TasI	AATT	5 cut(s)	543, 851, 859, 887, 1136
TatI	WGTACW	1 cut(s)	654
Tru1I	TTAA	2 cut(s)	702, 1005
Tru9I	TTAA	2 cut(s)	702, 1005
TscAI	CASTG	2 cut(s)	73, 367
TseI	GCWGC	3 cut(s)	53, 107, 943
TspDTI	ATGAA	4 cut(s)	177, 713, 960, 1137
TspRI	CASTG	2 cut(s)	73, 367
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	3 cut(s)	851, 887, 1136
XbaI	TCTAGA	1 cut(s)	398
XceI	RCATGY	2 cut(s)	761, 965
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	4 cut(s)	399, 440, 681, 1183
Zsp2I	ATGCAT	2 cut(s)	967, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.