MD11G1162600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
16428521 .. 16430089
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1162600.v1.1.491

Sequence Viewer

Length: 144 bp
ATGTTTGTGGGTGGGACTCTGGGAGGTTACCTCTTCATCTGTGAGAAGGTTTCCGCGGCACTGCCCTTCTTAGATCTCCATACTGACCCGGAAAGGACTGCTTTAGGGTTGCATTTGGACCCGGAAGCGGTGCATGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

48

Amino Acids

5.04

Weight (kDa)

4.79

Isoelectric Point (pI)

17.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012214)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 54, 56, 128
AfiI CCNNNNNNNGG 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 2 cut(s) 89, 122
AvaII GGWCC 1 cut(s) 118
BcnI CCSGG 2 cut(s) 89, 122
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 89, 122
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 89, 122
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpuMI CCSGG 2 cut(s) 89, 122
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 89, 122
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 3 cut(s) 54, 56, 128
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 54
BstEII GGTNACC 1 cut(s) 26
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 87, 120
BstUI CGCG 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 54
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 118
Cfr42I CCGCGG 1 cut(s) 57
CviAII CATG 1 cut(s) 134
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 81, 135
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HapII CCGG 2 cut(s) 89, 122
Hin1II CATG 1 cut(s) 137
HinfI GANTC 1 cut(s) 16
HpaII CCGG 2 cut(s) 89, 122
HpyAV CCTTC 2 cut(s) 40, 76
HpyCH4V TGCA 2 cut(s) 112, 133
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 1 cut(s) 137
KspI CCGCGG 1 cut(s) 57
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 5, 102, 135
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 73
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 2 cut(s) 17, 41
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 89, 122
MspR9I CCNGG 2 cut(s) 89, 122
MvnI CGCG 1 cut(s) 56
NciI CCSGG 2 cut(s) 89, 122
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 73
SacII CCGCGG 1 cut(s) 57
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 2 cut(s) 89, 122
SetI ASST 3 cut(s) 28, 33, 51
Sfr303I CCGCGG 1 cut(s) 57
SgeI CNNG 6 cut(s) 32, 67, 100, 101, 133, 134
SgrBI CCGCGG 1 cut(s) 57
SinI GGWCC 1 cut(s) 118
SsiI CCGC 3 cut(s) 54, 56, 128
StyD4I CCNGG 2 cut(s) 87, 120
TauI GCSGC 1 cut(s) 59
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.