Rh5BG304000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012214
Physical Location & Seq
Forward (+)
39332511 .. 39337590
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG304000.1

Sequence Viewer

Length: 876 bp
ATGTATGTGGGTGGGAGGCAACCTCTCCATCTCCAAGAAGATTTTTGTGGCACTGCTCTTCTTAGTGCAGAATGGCTTCGCACGGACTCTAGAAGGACTGCTGTAGGGTTGGATTTGGACCTTGAAGCGCTAGAATGGTGCATGGAGAACAACATAAATAAGATAGGGTCTGATGGGTATTCCAGAATATCCCTCTTCCATGGGAATGTCTTGCAACCTCTTGAGGCCAAGCTAATTGAGTTTGAGCCCCAGGAGCTGATAAGAAACATTTCACTCTCTGAAAACAAAGATGTTTCTGAGAGTGGTGGACTTGAAGGGGGTTCTTCTTCTCCACATAATGAGAAGTACATGAGGAACCATCCATTGCCTGCTAGAGACATAGTGTGTGCTTTTAACTACAGCTGTTGCTGTCTTCATCGACGTGCTGAACTGGTTTTGTATTTCAAGCATGTTCTTGATGTCTTGTCAAAGAAAGGTGGAATATTTGTAATGGATTTATATGGTGGTACATCATCAGAGTGCAAGTTAAGGCTTCAAAGGAAATTTGCCAATTTCACGTATTTTTGGGAGCAAGCTGAATTTGATATCATTGAGCGCAAAACAAGGATTAGTCTCCATTTCCATCTCAAAAAGCAGCAGAAGAAACTTCGACATGCATTTTCATACAGCTGGAGGCTGTGGTCATTGCCTGAGATTAAGGACTGCTTAGAAGAGGCAGGTTTTCAATCTGTCCACTTTTGGTTGCGCGAGATGCAAGACACCAGAGAAATCAGAAAAACAGAAGGTTTTGGTGTTGGGCGAGACATAAAATATGAAGAGGTTACAAAATTTCAGCAACAAGATGCTTGGAATGCATATGTCGTAGCTGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.81

Weight (kDa)

6.56

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 707
AccII CGCG 1 cut(s) 747
AcsI RAATTY 3 cut(s) 542, 578, 827
AfaI GTAC 2 cut(s) 347, 508
AfeI AGCGCT 1 cut(s) 129
AgsI TTSAA 5 cut(s) 125, 314, 445, 536, 725
AjiI CACGTC 1 cut(s) 422
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 6 cut(s) 232, 256, 402, 575, 669, 866
AluI AGCT 6 cut(s) 232, 256, 402, 575, 669, 866
Alw26I GTCTC 3 cut(s) 369, 617, 795
AlwNI CAGNNNCTG 1 cut(s) 256
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 634
ApoI RAATTY 3 cut(s) 542, 578, 827
Asp700I GAANNNNTTC 2 cut(s) 75, 268
AspLEI GCGC 3 cut(s) 130, 597, 747
AspS9I GGNCC 1 cut(s) 118
AvaII GGWCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 1 cut(s) 646
BccI CCATC 4 cut(s) 36, 167, 366, 630
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 3 cut(s) 369, 617, 795
BfaI CTAG 4 cut(s) 90, 131, 372, 874
BfmI CTRYAG 2 cut(s) 102, 397
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 707
BisI GCNGC 1 cut(s) 635
BlsI GCNGC 1 cut(s) 636
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 2 cut(s) 741, 832
BpiI GAAGAC 1 cut(s) 404
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 199, 249
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 2 cut(s) 362, 683
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 199, 249
BseGI GGATG 1 cut(s) 358
BseMI GCAATG 2 cut(s) 362, 683
BseMII CTCAG 2 cut(s) 288, 681
BseNI ACTGG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 646
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 747
BshFI GGCC 1 cut(s) 227
BsmAI GTCTC 3 cut(s) 369, 617, 795
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 289, 682
BspFNI CGCG 1 cut(s) 747
BspLI GGNNCC 1 cut(s) 356
BspMI ACCTGC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 362, 683
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 199, 249
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 251
Bst6I CTCTTC 4 cut(s) 63, 200, 705, 810
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 2 cut(s) 369, 573
BstDEI CTNAG 4 cut(s) 62, 297, 690, 706
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 747
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 3 cut(s) 130, 597, 747
BstMAI GTCTC 3 cut(s) 369, 617, 795
BstMWI GCNNNNNNNGC 3 cut(s) 253, 751, 851
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 2 cut(s) 452, 656
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 2 cut(s) 102, 397
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 707
Cac8I GCNNGC 2 cut(s) 369, 573
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 3 cut(s) 130, 597, 747
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 346, 507
CviAII CATG 5 cut(s) 142, 200, 349, 449, 653
CviQI GTAC 2 cut(s) 346, 507
DdeI CTNAG 4 cut(s) 62, 297, 690, 706
Eam1104I CTCTTC 4 cut(s) 63, 200, 705, 810
EarI CTCTTC 4 cut(s) 63, 200, 705, 810
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 118
Eco47III AGCGCT 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 2 cut(s) 658, 856
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 5 cut(s) 145, 203, 352, 452, 656
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FatI CATG 5 cut(s) 141, 199, 348, 448, 652
FauNDI CATATG 1 cut(s) 856
Fnu4HI GCNGC 1 cut(s) 635
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 635
FspBI CTAG 4 cut(s) 90, 131, 372, 874
GlaI GCGC 3 cut(s) 129, 596, 746
GluI GCNGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 691
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 227
HhaI GCGC 3 cut(s) 130, 597, 747
Hin1II CATG 5 cut(s) 145, 203, 352, 452, 656
Hin6I GCGC 3 cut(s) 128, 595, 745
HinP1I GCGC 3 cut(s) 128, 595, 745
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 308, 733
Hpy188I TCNGA 5 cut(s) 172, 280, 298, 517, 773
Hpy188III TCNNGA 4 cut(s) 90, 183, 221, 455
Hpy8I GTNNAC 2 cut(s) 308, 733
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 3 cut(s) 87, 308, 776
HpyCH4IV ACGT 2 cut(s) 421, 557
HpyCH4V TGCA 7 cut(s) 68, 141, 214, 522, 656, 754, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 751, 851
HpyF3I CTNAG 4 cut(s) 62, 297, 690, 706
HpySE526I ACGT 2 cut(s) 421, 557
Hsp92II CATG 5 cut(s) 145, 203, 352, 452, 656
HspAI GCGC 3 cut(s) 128, 595, 745
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 253, 568
LpnPI CCDG 9 cut(s) 196, 236, 263, 381, 416, 655, 702, 702, 775
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 2 cut(s) 741, 832
MaeI CTAG 4 cut(s) 90, 131, 372, 874
MaeII ACGT 2 cut(s) 421, 557
MaeIII GTNAC 1 cut(s) 820
MboII GAAGA 9 cut(s) 50, 50, 187, 315, 318, 404, 652, 722, 827
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 234, 542, 550, 578, 827
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 9 cut(s) 9, 33, 203, 217, 228, 345, 666, 706, 811
Mph1103I ATGCAT 2 cut(s) 658, 856
MroXI GAANNNNTTC 2 cut(s) 75, 268
MseI TTAA 3 cut(s) 393, 527, 696
MslI CAYNNNNRTG 3 cut(s) 204, 420, 517
MspA1I CMGCKG 2 cut(s) 402, 669
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 3 cut(s) 253, 751, 851
NcoI CCATGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 856
NlaIII CATG 5 cut(s) 145, 203, 352, 452, 656
NlaIV GGNNCC 1 cut(s) 356
NsiI ATGCAT 2 cut(s) 658, 856
NspI RCATGY 2 cut(s) 452, 656
PciSI GCTCTTC 1 cut(s) 63
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 2 cut(s) 75, 268
PkrI GCNGC 1 cut(s) 636
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Ppu21I YACGTR 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 256
PvuII CAGCTG 2 cut(s) 402, 669
RsaI GTAC 2 cut(s) 347, 508
RsaNI GTAC 2 cut(s) 346, 507
RseI CAYNNNNRTG 3 cut(s) 204, 420, 517
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 393, 527, 696
SatI GCNGC 1 cut(s) 635
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 2 cut(s) 741, 832
SfcI CTRYAG 2 cut(s) 102, 397
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 3 cut(s) 204, 420, 517
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 5 cut(s) 234, 542, 550, 578, 827
SspI AATATT 1 cut(s) 483
SspMI CTAG 4 cut(s) 90, 131, 372, 874
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 199
TaiI ACGT 2 cut(s) 424, 560
TaqI TCGA 2 cut(s) 418, 649
TasI AATT 5 cut(s) 234, 542, 550, 578, 827
TatI WGTACW 1 cut(s) 345
Tru1I TTAA 3 cut(s) 393, 527, 696
Tru9I TTAA 3 cut(s) 393, 527, 696
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 634
TspDTI ATGAA 3 cut(s) 404, 651, 828
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 3 cut(s) 542, 578, 827
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 2 cut(s) 452, 656
XmnI GAANNNNTTC 2 cut(s) 75, 268
XspI CTAG 4 cut(s) 90, 131, 372, 874
Zsp2I ATGCAT 2 cut(s) 658, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.