Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000954.1

Orthogroup ID

OG0012214

Physical Location & Seq

Genomic Coordinates Reverse (-)

29263 .. 32741

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000954.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgggaaagcgagacaagaaacagagacaccaacacagaacctcccacagagctgcctttcactacactgaagaaggcgaagaaggcgtcagctttgaaagtcatgctgcttccaagttcagtctttctgaagaagaagaagaagaagaaaaagacgaagatgaagaagaagacgaagacgaagacgaagcagagattgaggaaactgataaatacccatcaaaagatatgccctcaaagtttcttctttatcaacaatctgtgcagtcgccaaaaggagacataagctatttgcagaagttctttttgatgtatgtgggtggaaggcaacctctccatctccaagaagatttttgtggcactgctcttcttagtgcagaatggctccgcacagactctagaaggactgctgtagggttggatttggaccttgaagcgctagaatggtgcatggagaacaacataaataagatagggtctgatgggtattccagaatatccctcttccatgggaatgtcttgcaacctcttgaggccaagctaattgagtttgagccccaggagctgataagaaacatttcactctctgaaaacaaagatgtttctgagagtggtggacttgaagggggttcttcttctccacataatgagaagtacatgaggaaccatccattgcctgctagagacatagtgtgtgcttttaactacagctgttgctgtcttcatcgacgtgctgaactggttttgtatttcaagcatgttcttgatgttttgtcaaaaaaaggtggaatatttgtaatggatttatatggtggtacatcatcagagtgcaagctaaggcttcaaaggaaatttgccaatttcacgcctcatgatgcagtgcttcctaatgtgattcctgaaaatgatatccctcaagaacccttgtctgcatctagggtttctcccattgaagacactattcctcaagttgacaattctttatctccagatgtcttgtctgaccataagactcatcccaataattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.91

Weight (kDa)

4.88

Isoelectric Point (pI)

72.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27590
fragaria_vesca	FvH4_3g24630 FvH4_3g24630
malus_domestica	MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica	Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis	pycom03g09680
rosa_chinensis	RchiOBHm_Chr5g0044201
rosa_laevigata	RLG00000034252
rosa_multiflora	Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036840
rosa_rugosa	Rorug05G0211500 Rorug05G0211600.1
rosa_samantha	Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana	Rw5G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	851
AcuI	CTGAAG	2 cut(s)	90, 150
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	656, 817
AfeI	AGCGCT	1 cut(s)	438
AgsI	TTSAA	6 cut(s)	98, 434, 623, 754, 845, 953
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	7 cut(s)	53, 93, 288, 541, 565, 711, 835
AluI	AGCT	7 cut(s)	53, 93, 288, 541, 565, 711, 835
Alw26I	GTCTC	4 cut(s)	6, 19, 273, 678
AlwNI	CAGNNNCTG	1 cut(s)	565
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	2 cut(s)	53, 107
ApoI	RAATTY	1 cut(s)	851
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
Asp700I	GAANNNNTTC	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	5 cut(s)	177, 183, 189, 713, 960
BbvI	GCAGC	2 cut(s)	40, 94
BccI	CCATC	4 cut(s)	226, 345, 476, 675
BciT130I	CCWGG	1 cut(s)	560
BcoDI	GTCTC	4 cut(s)	6, 19, 273, 678
BfaI	CTAG	4 cut(s)	399, 440, 681, 936
BfmI	CTRYAG	2 cut(s)	411, 706
BfoI	RGCGCY	1 cut(s)	440
BisI	GCNGC	2 cut(s)	54, 108
BlsI	GCNGC	2 cut(s)	55, 109
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	386, 665
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	865, 941
BpiI	GAAGAC	5 cut(s)	177, 183, 189, 713, 960
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	1 cut(s)	836
BpuEI	CTTGAG	3 cut(s)	551, 900, 951
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	508, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	744
Bse3DI	GCAATG	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	2 cut(s)	508, 558
BseGI	GGATG	2 cut(s)	667, 1015
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	744
BseXI	GCAGC	2 cut(s)	40, 94
BsgI	GTGCAG	2 cut(s)	284, 396
BshFI	GGCC	1 cut(s)	536
BsmAI	GTCTC	4 cut(s)	6, 19, 273, 678
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	1 cut(s)	598
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	386, 665
BspQI	GCTCTTC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	508, 558
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	560
Bst6I	CTCTTC	2 cut(s)	372, 509
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	678, 833
BstDEI	CTNAG	3 cut(s)	371, 606, 836
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	667, 1015
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstMAI	GTCTC	4 cut(s)	6, 19, 273, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 562
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	2 cut(s)	411, 706
BstV1I	GCAGC	2 cut(s)	40, 94
BstV2I	GAAGAC	5 cut(s)	177, 183, 189, 713, 960
BsuRI	GGCC	1 cut(s)	536
BtgI	CCRYGG	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	667, 1015
BtsI	GCAGTG	2 cut(s)	360, 885
BtsIMutI	CAGTG	3 cut(s)	66, 360, 885
Cac8I	GCNNGC	2 cut(s)	678, 833
CaiI	CAGNNNCTG	1 cut(s)	565
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	655, 816
CviAII	CATG	6 cut(s)	104, 451, 509, 658, 758, 872
CviQI	GTAC	2 cut(s)	655, 816
DdeI	CTNAG	3 cut(s)	371, 606, 836
Eam1104I	CTCTTC	2 cut(s)	372, 509
EarI	CTCTTC	2 cut(s)	372, 509
Eco130I	CCWWGG	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	558
Eco32I	GATATC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	438
Eco57I	CTGAAG	2 cut(s)	90, 150
EcoRII	CCWGG	1 cut(s)	558
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	6 cut(s)	107, 454, 512, 661, 761, 875
FatI	CATG	6 cut(s)	103, 450, 508, 657, 757, 871
Fnu4HI	GCNGC	2 cut(s)	54, 108
FokI	GGATG	2 cut(s)	654, 1002
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	54, 108
FspBI	CTAG	4 cut(s)	399, 440, 681, 936
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	54, 108
GsuI	CTGGAG	1 cut(s)	972
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	536
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	107, 454, 512, 661, 761, 875
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	3 cut(s)	395, 895, 1012
Hpy166II	GTNNAC	2 cut(s)	617, 973
Hpy188I	TCNGA	6 cut(s)	130, 481, 589, 607, 826, 1003
Hpy188III	TCNNGA	8 cut(s)	399, 492, 530, 764, 872, 899, 917, 989
Hpy8I	GTNNAC	2 cut(s)	617, 973
Hpy99I	CGWCG	1 cut(s)	732
HpyAV	CCTTC	5 cut(s)	68, 77, 318, 396, 617
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	8 cut(s)	265, 295, 377, 450, 523, 831, 878, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 562
HpyF3I	CTNAG	3 cut(s)	371, 606, 836
HpySE526I	ACGT	1 cut(s)	730
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	107, 454, 512, 661, 761, 875
HspAI	GCGC	1 cut(s)	437
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	2 cut(s)	390, 562
LpnPI	CCDG	7 cut(s)	505, 545, 572, 690, 725, 912, 1002
Lsp1109I	GCAGC	2 cut(s)	40, 94
LweI	GCATC	2 cut(s)	865, 941
MaeI	CTAG	4 cut(s)	399, 440, 681, 936
MaeII	ACGT	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	5 cut(s)	543, 851, 859, 976, 1024
MlyI	GAGTC	2 cut(s)	389, 1006
MmeI	TCCRAC	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	577
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	3 cut(s)	513, 729, 826
MspA1I	CMGCKG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	84, 562
NcoI	CCATGG	1 cut(s)	508
NlaIII	CATG	6 cut(s)	107, 454, 512, 661, 761, 875
NlaIV	GGNNCC	2 cut(s)	386, 665
NspI	RCATGY	1 cut(s)	761
PagI	TCATGA	1 cut(s)	871
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	55, 109
PleI	GAGTC	2 cut(s)	389, 1006
PpsI	GAGTC	2 cut(s)	389, 1006
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	386, 665
PspPI	GGNCC	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	711
RsaI	GTAC	2 cut(s)	656, 817
RsaNI	GTAC	2 cut(s)	655, 816
RseI	CAYNNNNRTG	3 cut(s)	513, 729, 826
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	2 cut(s)	54, 108
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	389, 1006
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	865, 941
SfcI	CTRYAG	2 cut(s)	411, 706
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	3 cut(s)	513, 729, 826
SmlI	CTYRAG	3 cut(s)	530, 915, 966
SmoI	CTYRAG	3 cut(s)	530, 915, 966
Sse9I	AATT	5 cut(s)	543, 851, 859, 976, 1024
SsiI	CCGC	1 cut(s)	388
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	4 cut(s)	399, 440, 681, 936
StyD4I	CCNGG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	508
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	1 cut(s)	727
TasI	AATT	5 cut(s)	543, 851, 859, 976, 1024
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	895
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	3 cut(s)	73, 367, 885
TseI	GCWGC	2 cut(s)	53, 107
TspDTI	ATGAA	2 cut(s)	177, 713
TspRI	CASTG	3 cut(s)	73, 367, 885
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	851
XbaI	TCTAGA	1 cut(s)	398
XceI	RCATGY	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	577
XspI	CTAG	4 cut(s)	399, 440, 681, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.