Prupe.6G127300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012214
Physical Location & Seq
Forward (+)
9832775 .. 9836441
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G127300.1

Sequence Viewer

Length: 1176 bp
ATGGGAAAGCGAGACAAGAAACAGAGACACCAGCCAAGAAGAGCTGCCTTTCACTACACTGAAGAAGACGAAGAAGGTGTTGGTGATGGTCATTATGAAGGTCACTCCGCTTCGAAGCACACACTTTCTGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGGTTGATGGAAAAGAGGAAGCTGATGAGTACCCATCAAATGATTTGCCTTCAAAATTTCTTCTTTATCAACAATCTGTACAGTCACCAAAGGGAGACATAAGCTATCTGCAGAAGTTCTTTTTGATGTATGTGGGCGGGAGGTTACCTCTCCATCTCCAAGAAGATTTCTGTGGCACAGCCCTTCTTAGTGCAGAATGGCTCCGGACTGATACAAGGAGGACTGCTGTAGGGTTGGATTTAGATGTTGAAGCACTAAATTGGTGCATGGAGAACAACATAAATAAAGTTGGGGCTGATGCATATTCCAGAATGTCCCTCTTTCATGGGAATATCTTGCAACCTCTTGAGGCCAAACTAGTTAAATTCGAGCCCCAGGAGCTGATAAGAAAGGTGTCACTCACTGAGAACAAAGATAATTTGGAGAGTGATGAAGGTGAATCTACTCTTGCTGAGGGCTCTTCTTCCTCAAATGATGAGAAATACTTGAGGAACCATCTGTTGCCTGCTAGAGATATTGTGTGTGCTTTCAACTACAGCTGTTGTTGTCTCCATCAACGTTCTGAACTGGTTCTGTATTTCAAGCATGCTCTTGATGCCTTGTCGAAGAAAGGTGGAATATTTGTAATGGATTTATATGGTGGTACATCCTCAGAGTGCAAGCTAAGGCTTCAGAGGAGATTTTCCAATTTTACGTACGTTTGGGAGCAAGCTGAGTTTGATATCATTGAGCGCAAGACAAGGATTAGCCTCCATTTCCATCTCCAAAAGCAGCAGAAGAAAATTCGACATGCATTTTCATACAGTTGGAGGCTGTGGTCACTGCCTGAGATTAAAGACTGCTTAGAAGAGGCAGGATTTCAGTCTGTTCATTTTTGGCTGCGGAAGATGCAAGACAGCAGAGATATGAGAAAAACAGAGGGTTTTGGTGTCGGGCGTGACATAAAGTATGAAGAGATAAAACATTTTCAGCAACAAGACTCTTGGAATGCATACATCGTAGGTGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

45.51

Weight (kDa)

5.42

Isoelectric Point (pI)

68.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 366
AciI CCGC 3 cut(s) 108, 300, 1045
AclI AACGTT 1 cut(s) 721
AcsI RAATTY 3 cut(s) 218, 527, 945
AcuI CTGAAG 3 cut(s) 81, 150, 818
AfaI GTAC 4 cut(s) 194, 243, 808, 860
AgsI TTSAA 4 cut(s) 216, 413, 694, 745
AhlI ACTAGT 1 cut(s) 520
AjnI CCWGG 1 cut(s) 537
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 7 cut(s) 44, 185, 267, 544, 702, 826, 875
AluI AGCT 7 cut(s) 44, 185, 267, 544, 702, 826, 875
Alw26I GTCTC 4 cut(s) 6, 19, 252, 716
AlwNI CAGNNNCTG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 366
AoxI GGCC 1 cut(s) 513
ApeKI GCWGC 3 cut(s) 44, 934, 1042
ApoI RAATTY 3 cut(s) 218, 527, 945
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 1 cut(s) 897
AsuHPI GGTGA 3 cut(s) 95, 240, 611
AsuII TTCGAA 1 cut(s) 113
BanII GRGCYC 2 cut(s) 537, 623
BbsI GAAGAC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 31, 946, 1029
BccI CCATC 7 cut(s) 80, 164, 205, 324, 666, 723, 930
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 4 cut(s) 6, 19, 252, 716
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 2 cut(s) 521, 672
BfmI CTRYAG 3 cut(s) 272, 390, 697
BisI GCNGC 3 cut(s) 45, 935, 1043
BlsI GCNGC 3 cut(s) 46, 936, 1044
Bme1390I CCNGG 1 cut(s) 539
BmiI GGNNCC 2 cut(s) 365, 656
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 3 cut(s) 451, 748, 1041
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu10I CCTNAGC 2 cut(s) 615, 827
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 530, 670
BsaAI YACGTR 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 366
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 1 cut(s) 809
BseMII CTCAG 5 cut(s) 558, 606, 828, 867, 981
BseNI ACTGG 1 cut(s) 735
BseRI GAGGAG 1 cut(s) 853
BseXI GCAGC 3 cut(s) 31, 946, 1029
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 1 cut(s) 515
BsiSI CCGG 1 cut(s) 367
BsiWI CGTACG 1 cut(s) 858
BslFI GGGAC 1 cut(s) 463
BsmAI GTCTC 4 cut(s) 6, 19, 252, 716
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 1156
BsnI GGCC 1 cut(s) 515
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 537, 623
Bsp13I TCCGGA 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 241
BspACI CCGC 3 cut(s) 108, 300, 1045
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 5 cut(s) 559, 607, 827, 868, 982
BspEI TCCGGA 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 365, 656
BspMAI CTGCAG 1 cut(s) 276
BspQI GCTCTTC 2 cut(s) 34, 628
BspT104I TTCGAA 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 735
BssECI CCNNGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 246, 968
Bst6I CTCTTC 6 cut(s) 34, 129, 156, 628, 1005, 1110
BstAUI TGTACA 1 cut(s) 241
BstBAI YACGTR 1 cut(s) 858
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 4 cut(s) 669, 750, 824, 873
BstDEI CTNAG 8 cut(s) 350, 567, 615, 814, 827, 876, 990, 1006
BstEII GGTNACC 1 cut(s) 306
BstF5I GGATG 1 cut(s) 809
BstHHI GCGC 1 cut(s) 897
BstMAI GTCTC 4 cut(s) 6, 19, 252, 716
BstMWI GCNNNNNNNGC 3 cut(s) 541, 758, 1051
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 2 cut(s) 752, 956
BstPI GGTNACC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 3 cut(s) 272, 390, 697
BstSNI TACGTA 1 cut(s) 858
BstV1I GCAGC 3 cut(s) 31, 946, 1029
BstV2I GAAGAC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 515
BtsCI GGATG 1 cut(s) 809
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 3 cut(s) 57, 564, 983
Cac8I GCNNGC 4 cut(s) 669, 750, 824, 873
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 897
Csp6I GTAC 4 cut(s) 193, 242, 807, 859
CviAII CATG 4 cut(s) 430, 488, 749, 953
CviQI GTAC 4 cut(s) 193, 242, 807, 859
DdeI CTNAG 8 cut(s) 350, 567, 615, 814, 827, 876, 990, 1006
Eam1104I CTCTTC 6 cut(s) 34, 129, 156, 628, 1005, 1110
EarI CTCTTC 6 cut(s) 34, 129, 156, 628, 1005, 1110
Eco105I TACGTA 1 cut(s) 858
Eco24I GRGCYC 2 cut(s) 537, 623
Eco32I GATATC 1 cut(s) 886
Eco57I CTGAAG 3 cut(s) 81, 150, 818
Eco91I GGTNACC 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 537
EcoRV GATATC 1 cut(s) 886
EcoT22I ATGCAT 3 cut(s) 466, 958, 1156
EcoT38I GRGCYC 2 cut(s) 537, 623
FaeI CATG 4 cut(s) 433, 491, 752, 956
FaqI GGGAC 1 cut(s) 463
FatI CATG 4 cut(s) 429, 487, 748, 952
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 3 cut(s) 45, 935, 1043
FokI GGATG 1 cut(s) 796
FriOI GRGCYC 2 cut(s) 537, 623
Fsp4HI GCNGC 3 cut(s) 45, 935, 1043
FspBI CTAG 2 cut(s) 521, 672
GlaI GCGC 1 cut(s) 896
GluI GCNGC 3 cut(s) 45, 935, 1043
HaeIII GGCC 1 cut(s) 515
HapII CCGG 1 cut(s) 367
HhaI GCGC 1 cut(s) 897
Hin1II CATG 4 cut(s) 433, 491, 752, 956
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HinfI GANTC 2 cut(s) 602, 1142
HpaII CCGG 1 cut(s) 367
HphI GGTGA 3 cut(s) 95, 240, 611
Hpy188I TCNGA 4 cut(s) 130, 727, 817, 837
Hpy188III TCNNGA 4 cut(s) 367, 471, 509, 755
HpyAV CCTTC 5 cut(s) 68, 92, 222, 356, 590
HpyCH4III ACNGT 2 cut(s) 246, 968
HpyCH4IV ACGT 3 cut(s) 721, 857, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 541, 758, 1051
HpyF3I CTNAG 8 cut(s) 350, 567, 615, 814, 827, 876, 990, 1006
HpySE526I ACGT 3 cut(s) 721, 857, 861
Hsp92II CATG 4 cut(s) 433, 491, 752, 956
HspAI GCGC 1 cut(s) 895
Kpn2I TCCGGA 1 cut(s) 366
LguI GCTCTTC 2 cut(s) 34, 628
LmnI GCTCC 3 cut(s) 369, 541, 868
LpnPI CCDG 9 cut(s) 44, 380, 484, 524, 551, 681, 716, 1002, 1002
Lsp1109I GCAGC 3 cut(s) 31, 946, 1029
LweI GCATC 3 cut(s) 451, 748, 1041
MaeI CTAG 2 cut(s) 521, 672
MaeII ACGT 3 cut(s) 721, 857, 861
MaeIII GTNAC 6 cut(s) 101, 246, 306, 558, 981, 1100
MhlI GDGCHC 2 cut(s) 537, 623
MluCI AATT 6 cut(s) 218, 421, 527, 580, 850, 945
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 2 cut(s) 378, 950
Mph1103I ATGCAT 3 cut(s) 466, 958, 1156
MroI TCCGGA 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 2 cut(s) 525, 996
MspA1I CMGCKG 1 cut(s) 702
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 539
Mva1269I GAATGC 1 cut(s) 1156
MvaI CCWGG 1 cut(s) 539
MwoI GCNNNNNNNGC 3 cut(s) 541, 758, 1051
NlaIII CATG 4 cut(s) 433, 491, 752, 956
NlaIV GGNNCC 2 cut(s) 365, 656
NmuCI GTSAC 5 cut(s) 101, 246, 558, 981, 1100
NsiI ATGCAT 3 cut(s) 466, 958, 1156
NspI RCATGY 2 cut(s) 752, 956
NspV TTCGAA 1 cut(s) 113
PaeI GCATGC 1 cut(s) 752
PciSI GCTCTTC 2 cut(s) 34, 628
PctI GAATGC 1 cut(s) 1156
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 1 cut(s) 602
Pfl23II CGTACG 1 cut(s) 858
PkrI GCNGC 3 cut(s) 46, 936, 1044
PleI GAGTC 1 cut(s) 1136
PpsI GAGTC 1 cut(s) 1136
Ppu21I YACGTR 1 cut(s) 858
Psp1406I AACGTT 1 cut(s) 721
Psp6I CCWGG 1 cut(s) 537
PspEI GGTNACC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 537
PspLI CGTACG 1 cut(s) 858
PspN4I GGNNCC 2 cut(s) 365, 656
PstI CTGCAG 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 702
RsaI GTAC 4 cut(s) 194, 243, 808, 860
RsaNI GTAC 4 cut(s) 193, 242, 807, 859
SapI GCTCTTC 2 cut(s) 34, 628
SaqAI TTAA 2 cut(s) 525, 996
SatI GCNGC 3 cut(s) 45, 935, 1043
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 2 cut(s) 537, 623
SfaNI GCATC 3 cut(s) 451, 748, 1041
SfcI CTRYAG 3 cut(s) 272, 390, 697
SfuI TTCGAA 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 509, 649
SmoI CTYRAG 2 cut(s) 509, 649
SnaBI TACGTA 1 cut(s) 858
SpeI ACTAGT 1 cut(s) 520
SphI GCATGC 1 cut(s) 752
Sse9I AATT 6 cut(s) 218, 421, 527, 580, 850, 945
SsiI CCGC 3 cut(s) 108, 300, 1045
SspI AATATT 1 cut(s) 783
SspMI CTAG 2 cut(s) 521, 672
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 246, 968
TaiI ACGT 3 cut(s) 724, 860, 864
TaqI TCGA 4 cut(s) 113, 531, 767, 949
TasI AATT 6 cut(s) 218, 421, 527, 580, 850, 945
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 2 cut(s) 525, 996
Tru9I TTAA 2 cut(s) 525, 996
TscAI CASTG 3 cut(s) 64, 571, 990
TseFI GTSAC 5 cut(s) 101, 246, 558, 981, 1100
TseI GCWGC 3 cut(s) 44, 934, 1042
Tsp45I GTSAC 5 cut(s) 101, 246, 558, 981, 1100
TspDTI ATGAA 6 cut(s) 111, 476, 609, 951, 1022, 1128
TspRI CASTG 3 cut(s) 64, 571, 990
XapI RAATTY 3 cut(s) 218, 527, 945
XceI RCATGY 2 cut(s) 752, 956
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 521, 672
Zsp2I ATGCAT 3 cut(s) 466, 958, 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.