Rh5CG331100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012214
Physical Location & Seq
Forward (+)
37205921 .. 37209722
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG331100.1

Sequence Viewer

Length: 1200 bp
ATGGGAAAGCGAGACAAGAAACAAAGACACCAACACAGAACCTCCCACAGAGCTGCCTTTCACTACACTGAAGAAGGTGAAGAAGGTGTCAGCTTTGAAAGTCATGCTGCTTCCAAGTTCAGTCTTTCTGAAGAAGAAGAAGTAGAAAAAAAAGACGAAGACGAAGATGAAGAAGAAGACGAAGACGAAGACGAAGCAGAGATTGAGGAAACAGAGGAAACTGATAAATACCCATCAAAAGATATGCCCTCAAAGTTTCTTCTTTATCAACAATCTGTGCAGTCGCCAAAAGGAGACATAAGCTATTTGCAGAAGTTCTTTTTGATGTATGTGGGTGGGAGGCAACCTCTCCATCTCCAAGAAGATTTTTGTGGCACTGCTCTTCTTAGTGCAGAATGGCTCCGCACAGACTCTAGAAGGACTGCTGTAGGGTTGGATTTGGACCTTGAAGCGCTAGAATGGTGCATGGAGAACAACATAAATAAGATAGGGTCTGATGGGTATTCCAGAATATCCCTCTTCCATGGGAATGTCTTGCAACCTCTTGAGGCCAAGCTAATTGAGTTTGAGCCCCAGGAGCTGATAAGAAACATTTCACTCTCTGAAAACAAAGATGTTTCTGAGAGTGGTGGACTTGAAGGGGGTTCTTCTTCTCCACATAATGAGAAGTACATGAGGAACCATCCATTGCCTGCTAGAGACATAGTGTGTGCTTTTAACTACAGCTGTTGCTGTCTTCATCGACGTGCTGAACTGGTTTTGTATTTCAAGCATGTTCTTGATGTCTTGTCAAAGAAAGGTGGAATATTTGTAATGGATTTATATGGTGGTACATCATCGGAGTGCAAGCTAAGGCTTCAAAGGAAATTTGCCAATTTCACGTATTTTTGGGAGCAAGCTGAATTTGATATCATTGAGCGCAAAACAAGGATTAGTCTCCATTTCCATCTCAAAAAGCAGCAGAAGAAACTTCGACATGCATTTTCATACAGCTGGAGGCTGTGGTCATTGCCTGAGATTAAGGACTGCTTAGAAGAGGCAGGTTTTCAATCTGTCCACTTTTGGTTGCGCGAGATGCAAGACACCAGAGAAATCAGAAAAACAGAAGGTTTTGGTGTTGGGCGAGACATAAAATATGAAGAGGTTACAAAATTTCAGCAACAAGATGCTTGGAATGCATATGTCGTAGCTGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

46.55

Weight (kDa)

5.29

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012214)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27590
fragaria_vesca FvH4_3g24630 FvH4_3g24630
malus_domestica MD03G1142000.v1.1 MD11G1162600.v1.1
prunus_persica Prupe.6G127300_v2.0.a1 Prupe.6G127300_v2.0.a1
pyrus_communis pycom03g09680
rosa_chinensis RchiOBHm_Chr5g0044201
rosa_laevigata RLG00000034252
rosa_multiflora Rmu_sc0000954.1_g000008 Rmu_sc0019416.1_g000001
rosa_roxburghii Rroxscaffold_1G00036840
rosa_rugosa Rorug05G0211500 Rorug05G0211600.1
rosa_samantha Rh5BG304000 Rh5CG331100 Rh5DG312700
rosa_wichuraiana Rw5G027450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1031
AccII CGCG 1 cut(s) 1071
AciI CCGC 1 cut(s) 403
AcsI RAATTY 3 cut(s) 866, 902, 1151
AcuI CTGAAG 2 cut(s) 90, 150
AfaI GTAC 2 cut(s) 671, 832
AfeI AGCGCT 1 cut(s) 453
AgsI TTSAA 6 cut(s) 98, 449, 638, 769, 860, 1049
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 1 cut(s) 573
Alw26I GTCTC 5 cut(s) 6, 288, 693, 941, 1119
AlwNI CAGNNNCTG 1 cut(s) 580
Aor51HI AGCGCT 1 cut(s) 453
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 53, 107, 958
ApoI RAATTY 3 cut(s) 866, 902, 1151
Asp700I GAANNNNTTC 1 cut(s) 592
AspLEI GCGC 3 cut(s) 454, 921, 1071
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 573
BbsI GAAGAC 5 cut(s) 165, 183, 189, 195, 728
BbvI GCAGC 3 cut(s) 40, 94, 970
BccI CCATC 5 cut(s) 241, 360, 491, 690, 954
BciT130I CCWGG 1 cut(s) 575
BcoDI GTCTC 5 cut(s) 6, 288, 693, 941, 1119
BfaI CTAG 4 cut(s) 414, 455, 696, 1198
BfmI CTRYAG 2 cut(s) 426, 721
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 1031
BisI GCNGC 3 cut(s) 54, 108, 959
BlsI GCNGC 3 cut(s) 55, 109, 960
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 401, 680
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 1065, 1156
BpiI GAAGAC 5 cut(s) 165, 183, 189, 195, 728
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 1 cut(s) 1015
Bpu10I CCTNAGC 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 882
BsaJI CCNNGG 2 cut(s) 523, 573
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 759
Bse3DI GCAATG 2 cut(s) 686, 1007
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 523, 573
BseGI GGATG 1 cut(s) 682
BseMI GCAATG 2 cut(s) 686, 1007
BseMII CTCAG 2 cut(s) 612, 1005
BseNI ACTGG 1 cut(s) 759
BseXI GCAGC 3 cut(s) 40, 94, 970
BsgI GTGCAG 2 cut(s) 299, 411
Bsh1236I CGCG 1 cut(s) 1071
BshFI GGCC 1 cut(s) 551
BsmAI GTCTC 5 cut(s) 6, 288, 693, 941, 1119
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 573
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 1 cut(s) 403
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 2 cut(s) 613, 1006
BspFNI CGCG 1 cut(s) 1071
BspLI GGNNCC 2 cut(s) 401, 680
BspMI ACCTGC 1 cut(s) 1031
BspQI GCTCTTC 1 cut(s) 387
BsrDI GCAATG 2 cut(s) 686, 1007
BsrI ACTGG 1 cut(s) 759
BssECI CCNNGG 2 cut(s) 523, 573
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 575
Bst6I CTCTTC 4 cut(s) 387, 524, 1029, 1134
BstBAI YACGTR 1 cut(s) 882
BstC8I GCNNGC 3 cut(s) 693, 848, 897
BstDEI CTNAG 5 cut(s) 386, 621, 851, 1014, 1030
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 1 cut(s) 1071
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 3 cut(s) 454, 921, 1071
BstMAI GTCTC 5 cut(s) 6, 288, 693, 941, 1119
BstMWI GCNNNNNNNGC 3 cut(s) 577, 1075, 1175
BstNI CCWGG 1 cut(s) 575
BstNSI RCATGY 2 cut(s) 776, 980
BstSCI CCNGG 1 cut(s) 573
BstSFI CTRYAG 2 cut(s) 426, 721
BstUI CGCG 1 cut(s) 1071
BstV1I GCAGC 3 cut(s) 40, 94, 970
BstV2I GAAGAC 5 cut(s) 165, 183, 189, 195, 728
BsuRI GGCC 1 cut(s) 551
BtgI CCRYGG 1 cut(s) 523
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 66, 375
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 3 cut(s) 693, 848, 897
CaiI CAGNNNCTG 1 cut(s) 580
CfoI GCGC 3 cut(s) 454, 921, 1071
Cfr13I GGNCC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 670, 831
CviAII CATG 6 cut(s) 104, 466, 524, 673, 773, 977
CviQI GTAC 2 cut(s) 670, 831
DdeI CTNAG 5 cut(s) 386, 621, 851, 1014, 1030
Eam1104I CTCTTC 4 cut(s) 387, 524, 1029, 1134
EarI CTCTTC 4 cut(s) 387, 524, 1029, 1134
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 573
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 442
Eco47III AGCGCT 1 cut(s) 453
Eco57I CTGAAG 2 cut(s) 90, 150
EcoRII CCWGG 1 cut(s) 573
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 982, 1180
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 6 cut(s) 107, 469, 527, 676, 776, 980
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FatI CATG 6 cut(s) 103, 465, 523, 672, 772, 976
FauNDI CATATG 1 cut(s) 1180
Fnu4HI GCNGC 3 cut(s) 54, 108, 959
FokI GGATG 1 cut(s) 669
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 3 cut(s) 54, 108, 959
FspBI CTAG 4 cut(s) 414, 455, 696, 1198
GlaI GCGC 3 cut(s) 453, 920, 1070
GluI GCNGC 3 cut(s) 54, 108, 959
GsuI CTGGAG 1 cut(s) 1015
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 551
HhaI GCGC 3 cut(s) 454, 921, 1071
Hin1II CATG 6 cut(s) 107, 469, 527, 676, 776, 980
Hin6I GCGC 3 cut(s) 452, 919, 1069
HinP1I GCGC 3 cut(s) 452, 919, 1069
HinfI GANTC 1 cut(s) 410
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 632, 1057
Hpy188I TCNGA 6 cut(s) 130, 496, 604, 622, 841, 1097
Hpy188III TCNNGA 4 cut(s) 414, 507, 545, 779
Hpy8I GTNNAC 2 cut(s) 632, 1057
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 5 cut(s) 68, 77, 411, 632, 1100
HpyCH4IV ACGT 2 cut(s) 745, 881
HpyCH4V TGCA 9 cut(s) 280, 310, 392, 465, 538, 846, 980, 1078, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 577, 1075, 1175
HpyF3I CTNAG 5 cut(s) 386, 621, 851, 1014, 1030
HpySE526I ACGT 2 cut(s) 745, 881
Hsp92II CATG 6 cut(s) 107, 469, 527, 676, 776, 980
HspAI GCGC 3 cut(s) 452, 919, 1069
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 3 cut(s) 405, 577, 892
LpnPI CCDG 9 cut(s) 520, 560, 587, 705, 740, 979, 1026, 1026, 1099
Lsp1109I GCAGC 3 cut(s) 40, 94, 970
LweI GCATC 2 cut(s) 1065, 1156
MaeI CTAG 4 cut(s) 414, 455, 696, 1198
MaeII ACGT 2 cut(s) 745, 881
MaeIII GTNAC 1 cut(s) 1144
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 5 cut(s) 558, 866, 874, 902, 1151
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 414
Mph1103I ATGCAT 2 cut(s) 982, 1180
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 2 cut(s) 717, 1020
MslI CAYNNNNRTG 3 cut(s) 528, 744, 841
MspA1I CMGCKG 2 cut(s) 726, 993
MspR9I CCNGG 1 cut(s) 575
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 1 cut(s) 1071
MwoI GCNNNNNNNGC 3 cut(s) 577, 1075, 1175
NcoI CCATGG 1 cut(s) 523
NdeI CATATG 1 cut(s) 1180
NlaIII CATG 6 cut(s) 107, 469, 527, 676, 776, 980
NlaIV GGNNCC 2 cut(s) 401, 680
NsiI ATGCAT 2 cut(s) 982, 1180
NspI RCATGY 2 cut(s) 776, 980
PciSI GCTCTTC 1 cut(s) 387
PctI GAATGC 1 cut(s) 1180
PdmI GAANNNNTTC 1 cut(s) 592
PkrI GCNGC 3 cut(s) 55, 109, 960
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 882
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 2 cut(s) 401, 680
PspPI GGNCC 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 580
PvuII CAGCTG 2 cut(s) 726, 993
RsaI GTAC 2 cut(s) 671, 832
RsaNI GTAC 2 cut(s) 670, 831
RseI CAYNNNNRTG 3 cut(s) 528, 744, 841
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 717, 1020
SatI GCNGC 3 cut(s) 54, 108, 959
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 1 cut(s) 573
SfaNI GCATC 2 cut(s) 1065, 1156
SfcI CTRYAG 2 cut(s) 426, 721
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 3 cut(s) 528, 744, 841
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 5 cut(s) 558, 866, 874, 902, 1151
SsiI CCGC 1 cut(s) 403
SspI AATATT 1 cut(s) 807
SspMI CTAG 4 cut(s) 414, 455, 696, 1198
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 1 cut(s) 523
TaiI ACGT 2 cut(s) 748, 884
TaqI TCGA 2 cut(s) 742, 973
TasI AATT 5 cut(s) 558, 866, 874, 902, 1151
TatI WGTACW 1 cut(s) 669
Tru1I TTAA 2 cut(s) 717, 1020
Tru9I TTAA 2 cut(s) 717, 1020
TscAI CASTG 2 cut(s) 73, 382
TseI GCWGC 3 cut(s) 53, 107, 958
TspDTI ATGAA 4 cut(s) 183, 728, 975, 1152
TspRI CASTG 2 cut(s) 73, 382
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 3 cut(s) 866, 902, 1151
XbaI TCTAGA 1 cut(s) 413
XceI RCATGY 2 cut(s) 776, 980
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 4 cut(s) 414, 455, 696, 1198
Zsp2I ATGCAT 2 cut(s) 982, 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.