AT2G29980

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
12781524 .. 12785190
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29980.1

Sequence Viewer

Length: 1161 bp
ATGGTTGTTGCTATGGACCAACGCACCAATGTGAACGGAGATCCCGGCGCCGGAGACCGGAAGAAAGAAGAAAGGTTTGATCCGAGTGCACAACCACCGTTCAAGATCGGAGATATAAGGGCGGCGATTCCTAAGCACTGTTGGGTTAAGAGTCCTTTGAGATCAATGAGTTACGTCGTCAGAGACATTATCGCCGTCGCGGCTTTGGCCATCGCTGCCGTGTATGTTGATAGCTGGTTCCTTTGGCCTCTTTATTGGGCCGCCCAAGGAACACTTTTCTGGGCCATCTTTGTTCTCGGCCACGACTGTGGACATGGGAGTTTCTCAGACATTCCTCTACTGAATAGTGTGGTTGGTCACATTCTTCATTCTTTCATCCTCGTTCCTTACCATGGTTGGAGAATAAGCCACCGGACACACCACCAGAACCATGGCCATGTTGAAAACGACGAGTCATGGGTTCCGTTACCAGAAAGGGTGTACAAGAAATTGCCCCACAGTACTCGGATGCTCAGATACACTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTGTGCTACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAAGCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTTGGTCCATAATGTTCGTCAGTCTTATCGCTCTATCTTTCGTCTTCGGTCCACTCGCGGTTCTTAAAGTCTACGGTGTACCGTACATTATCTTTGTGATGTGGTTGGATGCTGTCACGTATTTGCATCATCATGGTCACGATGAGAAGTTGCCTTGGTATAGAGGCAAGGAATGGAGTTATCTACGTGGAGGATTAACAACAATTGATAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATCATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCACGAAAGCAGCTAAACATGTGTTGGGAAGATACTACAGAGAACCAAAGACGTCAGGAGCAATACCGATCCACTTGGTGGAGAGTTTGGTCGCAAGTATTAAGAAAGATCATTACGTCAGCGACACTGGTGATATTGTCTTCTACGAGACAGATCCAGATCTCTACGTTTACGCTTCTGACAAATCTAAAATCAATTAA

Protein Analysis

386

Amino Acids

44.08

Weight (kDa)

8.47

Isoelectric Point (pI)

26.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 17 - 70 7.4e-25 Domain of unknown function (DUF3474)
FA_desaturase PF00487 79 - 333 9.4e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1016
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 1039
AccI GTMKAC 2 cut(s) 726, 957
AccII CGCG 2 cut(s) 200, 713
AciI CCGC 4 cut(s) 122, 200, 261, 713
AclWI GGATC 6 cut(s) 35, 74, 592, 910, 1024, 1109
AcoI YGGCCR 3 cut(s) 207, 298, 433
AcvI CACGTG 1 cut(s) 913
AcyI GRCGYC 3 cut(s) 48, 960, 1013
AdeI CACNNNGTG 1 cut(s) 1039
AfaI GTAC 4 cut(s) 482, 502, 735, 740
AfiI CCNNNNNNNGG 4 cut(s) 50, 57, 392, 1039
AflIII ACRYGT 1 cut(s) 979
AgsI TTSAA 3 cut(s) 103, 443, 648
AjnI CCWGG 1 cut(s) 571
AleI CACNNNNGTG 2 cut(s) 29, 306
AluBI AGCT 3 cut(s) 234, 634, 974
AluI AGCT 3 cut(s) 234, 634, 974
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 48, 177, 1103
Alw44I GTGCAC 1 cut(s) 87
AlwI GGATC 6 cut(s) 35, 74, 592, 910, 1024, 1109
AoxI GGCC 6 cut(s) 207, 245, 258, 282, 298, 433
ApaLI GTGCAC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 215, 971
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 5 cut(s) 16, 258, 282, 660, 704
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 1103
AvaII GGWCC 3 cut(s) 16, 660, 704
BaeGI GKGCMC 1 cut(s) 91
BalI TGGCCA 2 cut(s) 209, 435
BanI GGYRCC 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 913
BbsI GAAGAC 2 cut(s) 691, 1093
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 202, 983
BccI CCATC 3 cut(s) 218, 293, 927
BceAI ACGGC 2 cut(s) 179, 203
BciT130I CCWGG 1 cut(s) 573
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 3 cut(s) 48, 177, 1103
BfmI CTRYAG 2 cut(s) 562, 997
BfoI RGCGCY 1 cut(s) 51
BglI GCCNNNNNGGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 1120
BisI GCNGC 5 cut(s) 123, 201, 216, 261, 972
BlsI GCNGC 5 cut(s) 124, 202, 217, 262, 973
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 45, 573
Bme18I GGWCC 3 cut(s) 16, 660, 704
BmgT120I GGNCC 5 cut(s) 16, 258, 282, 660, 704
BmiI GGNNCC 3 cut(s) 49, 239, 462
BmrFI CCNGG 2 cut(s) 45, 573
BmsI GCATC 3 cut(s) 498, 754, 790
BpiI GAAGAC 2 cut(s) 691, 1093
Bpu10I CCTNAGC 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 3 cut(s) 774, 842, 913
BsaBI GATNNNNATC 1 cut(s) 1119
BsaHI GRCGYC 3 cut(s) 48, 960, 1013
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 265, 391, 430, 809
BsaWI WCCGGW 2 cut(s) 57, 411
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 57, 392, 1039
Bse1I ACTGG 1 cut(s) 1093
Bse8I GATNNNNATC 1 cut(s) 1119
BseBI CCWGG 1 cut(s) 573
BseDI CCNNGG 4 cut(s) 265, 391, 430, 809
BseGI GGATG 3 cut(s) 375, 513, 769
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 4 cut(s) 50, 57, 392, 1039
BseMII CTCAG 2 cut(s) 339, 526
BseNI ACTGG 1 cut(s) 1093
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 2 cut(s) 202, 983
Bsh1236I CGCG 2 cut(s) 200, 713
BshFI GGCC 6 cut(s) 209, 247, 260, 284, 300, 435
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 4 cut(s) 45, 51, 58, 412
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 4 cut(s) 50, 57, 392, 1039
BsmAI GTCTC 3 cut(s) 48, 177, 1103
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 6 cut(s) 209, 247, 260, 284, 300, 435
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 480
Bsp19I CCATGG 2 cut(s) 391, 430
BspACI CCGC 4 cut(s) 122, 200, 261, 713
BspANI GGCC 6 cut(s) 209, 247, 260, 284, 300, 435
BspCNI CTCAG 2 cut(s) 338, 525
BspFNI CGCG 2 cut(s) 200, 713
BspLI GGNNCC 3 cut(s) 49, 239, 462
BspPI GGATC 6 cut(s) 35, 74, 592, 910, 1024, 1109
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 1 cut(s) 1093
BssECI CCNNGG 4 cut(s) 265, 391, 430, 809
BssNI GRCGYC 3 cut(s) 48, 960, 1013
BssT1I CCWWGG 4 cut(s) 265, 391, 430, 809
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 8 cut(s) 99, 140, 308, 500, 523, 605, 731, 738
Bst6I CTCTTC 1 cut(s) 932
BstACI GRCGYC 3 cut(s) 48, 960, 1013
BstAUI TGTACA 1 cut(s) 480
BstBAI YACGTR 3 cut(s) 774, 842, 913
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 132, 325, 512
BstDSI CCRYGG 2 cut(s) 391, 430
BstF5I GGATG 3 cut(s) 375, 513, 769
BstFNI CGCG 2 cut(s) 200, 713
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstMAI GTCTC 3 cut(s) 48, 177, 1103
BstMWI GCNNNNNNNGC 4 cut(s) 200, 206, 215, 968
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 2 cut(s) 43, 571
BstSFI CTRYAG 2 cut(s) 562, 997
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 2 cut(s) 200, 713
BstV1I GCAGC 2 cut(s) 202, 983
BstV2I GAAGAC 2 cut(s) 691, 1093
BstX2I RGATCY 3 cut(s) 40, 1114, 1120
BstXI CCANNNNNNTGG 2 cut(s) 308, 431
BstYI RGATCY 3 cut(s) 40, 1114, 1120
BsuRI GGCC 6 cut(s) 209, 247, 260, 284, 300, 435
BtgI CCRYGG 2 cut(s) 391, 430
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 3 cut(s) 375, 513, 769
BtsIMutI CAGTG 3 cut(s) 136, 519, 1086
Cac8I GCNNGC 1 cut(s) 540
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 5 cut(s) 16, 258, 282, 660, 704
CseI GACGC 1 cut(s) 968
Csp6I GTAC 4 cut(s) 481, 501, 734, 739
CviAII CATG 8 cut(s) 314, 392, 431, 437, 456, 535, 788, 980
CviQI GTAC 4 cut(s) 481, 501, 734, 739
DdeI CTNAG 3 cut(s) 132, 325, 512
DinI GGCGCC 1 cut(s) 49
DraIII CACNNNGTG 1 cut(s) 1039
EaeI YGGCCR 3 cut(s) 207, 298, 433
Eam1104I CTCTTC 1 cut(s) 932
EarI CTCTTC 1 cut(s) 932
Eco130I CCWWGG 4 cut(s) 265, 391, 430, 809
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 3 cut(s) 16, 660, 704
Eco72I CACGTG 1 cut(s) 913
EcoRII CCWGG 1 cut(s) 571
EcoT14I CCWWGG 4 cut(s) 265, 391, 430, 809
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 4 cut(s) 265, 391, 430, 809
FaeI CATG 8 cut(s) 317, 395, 434, 440, 459, 538, 791, 983
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 509
FatI CATG 8 cut(s) 313, 391, 430, 436, 455, 534, 787, 979
FblI GTMKAC 2 cut(s) 726, 957
Fnu4HI GCNGC 5 cut(s) 123, 201, 216, 261, 972
FokI GGATG 3 cut(s) 362, 520, 776
Fsp4HI GCNGC 5 cut(s) 123, 201, 216, 261, 972
GlaI GCGC 1 cut(s) 49
GluI GCNGC 5 cut(s) 123, 201, 216, 261, 972
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 6 cut(s) 209, 247, 260, 284, 300, 435
HapII CCGG 4 cut(s) 45, 51, 58, 412
HgaI GACGC 1 cut(s) 968
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 3 cut(s) 48, 960, 1013
Hin1II CATG 8 cut(s) 317, 395, 434, 440, 459, 538, 791, 983
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 4 cut(s) 127, 151, 452, 876
HpaII CCGG 4 cut(s) 45, 51, 58, 412
HphI GGTGA 1 cut(s) 1103
Hpy166II GTNNAC 9 cut(s) 34, 89, 311, 481, 707, 727, 734, 958, 1132
Hpy188I TCNGA 7 cut(s) 84, 110, 182, 328, 507, 515, 1141
Hpy188III TCNNGA 5 cut(s) 103, 794, 896, 1017, 1118
Hpy8I GTNNAC 9 cut(s) 34, 89, 311, 481, 707, 727, 734, 958, 1132
Hpy99I CGWCG 4 cut(s) 179, 200, 452, 962
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 8 cut(s) 99, 140, 308, 500, 523, 605, 731, 738
HpyCH4IV ACGT 7 cut(s) 174, 773, 841, 912, 1013, 1077, 1128
HpyCH4V TGCA 3 cut(s) 89, 641, 781
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 206, 215, 968
HpyF3I CTNAG 3 cut(s) 132, 325, 512
HpySE526I ACGT 7 cut(s) 174, 773, 841, 912, 1013, 1077, 1128
Hsp92I GRCGYC 3 cut(s) 48, 960, 1013
Hsp92II CATG 8 cut(s) 317, 395, 434, 440, 459, 538, 791, 983
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 622, 1019
Lsp1109I GCAGC 2 cut(s) 202, 983
LweI GCATC 3 cut(s) 498, 754, 790
MaeII ACGT 7 cut(s) 174, 773, 841, 912, 1013, 1077, 1128
MaeIII GTNAC 5 cut(s) 170, 356, 465, 769, 791
MboII GAAGA 7 cut(s) 73, 80, 356, 691, 919, 1002, 1093
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 3 cut(s) 40, 1114, 1120
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 2 cut(s) 209, 435
MluCI AATT 3 cut(s) 488, 858, 1156
MluNI TGGCCA 2 cut(s) 209, 435
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 2 cut(s) 160, 461
MmeI TCCRAC 2 cut(s) 377, 741
MnlI CCTC 8 cut(s) 258, 345, 389, 537, 558, 812, 839, 951
Mox20I TGGCCA 2 cut(s) 209, 435
MscI TGGCCA 2 cut(s) 209, 435
MseI TTAA 7 cut(s) 147, 594, 720, 851, 882, 1062, 1159
MslI CAYNNNNRTG 4 cut(s) 29, 306, 435, 786
Msp20I TGGCCA 2 cut(s) 209, 435
MspI CCGG 4 cut(s) 45, 51, 58, 412
MspR9I CCNGG 2 cut(s) 45, 573
MunI CAATTG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 2 cut(s) 200, 713
MwoI GCNNNNNNNGC 4 cut(s) 200, 206, 215, 968
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 45
NcoI CCATGG 2 cut(s) 391, 430
NlaIII CATG 8 cut(s) 317, 395, 434, 440, 459, 538, 791, 983
NlaIV GGNNCC 3 cut(s) 49, 239, 462
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 3 cut(s) 356, 769, 791
NspI RCATGY 1 cut(s) 983
OliI CACNNNNGTG 2 cut(s) 29, 306
PciI ACATGT 1 cut(s) 979
PfeI GAWTC 2 cut(s) 127, 876
PflMI CCANNNNNTGG 1 cut(s) 1039
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 5 cut(s) 124, 202, 217, 262, 973
PleI GAGTC 2 cut(s) 159, 460
PluTI GGCGCC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 913
PmlI CACGTG 1 cut(s) 913
PpsI GAGTC 2 cut(s) 159, 460
Ppu21I YACGTR 3 cut(s) 774, 842, 913
PscI ACATGT 1 cut(s) 979
Psp6I CCWGG 1 cut(s) 571
PspCI CACGTG 1 cut(s) 913
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 3 cut(s) 49, 239, 462
PspPI GGNCC 5 cut(s) 16, 258, 282, 660, 704
PsuI RGATCY 3 cut(s) 40, 1114, 1120
RsaI GTAC 4 cut(s) 482, 502, 735, 740
RsaNI GTAC 4 cut(s) 481, 501, 734, 739
RseI CAYNNNNRTG 4 cut(s) 29, 306, 435, 786
SalI GTCGAC 1 cut(s) 956
SaqAI TTAA 7 cut(s) 147, 594, 720, 851, 882, 1062, 1159
SatI GCNGC 5 cut(s) 123, 201, 216, 261, 972
Sau96I GGNCC 5 cut(s) 16, 258, 282, 660, 704
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 2 cut(s) 160, 461
ScrFI CCNGG 2 cut(s) 45, 573
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 3 cut(s) 498, 754, 790
SfcI CTRYAG 2 cut(s) 562, 997
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 3 cut(s) 16, 660, 704
SmiMI CAYNNNNRTG 4 cut(s) 29, 306, 435, 786
Sse9I AATT 3 cut(s) 488, 858, 1156
SsiI CCGC 4 cut(s) 122, 200, 261, 713
SspDI GGCGCC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 43, 571
StyI CCWWGG 4 cut(s) 265, 391, 430, 809
TaaI ACNGT 8 cut(s) 99, 140, 308, 500, 523, 605, 731, 738
TaiI ACGT 7 cut(s) 177, 776, 844, 915, 1016, 1080, 1131
TaqI TCGA 1 cut(s) 957
TaqII GACCGA 1 cut(s) 692
TasI AATT 3 cut(s) 488, 858, 1156
TatI WGTACW 2 cut(s) 480, 500
TauI GCSGC 3 cut(s) 125, 203, 263
TfiI GAWTC 2 cut(s) 127, 876
Tru1I TTAA 7 cut(s) 147, 594, 720, 851, 882, 1062, 1159
Tru9I TTAA 7 cut(s) 147, 594, 720, 851, 882, 1062, 1159
TscAI CASTG 3 cut(s) 143, 526, 1093
TseFI GTSAC 3 cut(s) 356, 769, 791
TseI GCWGC 2 cut(s) 215, 971
Tsp45I GTSAC 3 cut(s) 356, 769, 791
TspDTI ATGAA 3 cut(s) 356, 364, 881
TspGWI ACGGA 3 cut(s) 51, 453, 888
TspRI CASTG 3 cut(s) 143, 526, 1093
Van91I CCANNNNNTGG 1 cut(s) 1039
VneI GTGCAC 1 cut(s) 87
VpaK11BI GGWCC 3 cut(s) 16, 660, 704
XceI RCATGY 1 cut(s) 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XmiI GTMKAC 2 cut(s) 726, 957
ZraI GACGTC 1 cut(s) 1014
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.