Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

6169132 .. 6174603

Gene Structure 5472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1072600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGTAGCCAATGTGACCGGAGACCAAGTTGATTTTGACCCAAGTGCCCCTCCACCGTTCAAGATTGCTGAGATCAGAGATGCAATCCCCAAACACTGCTGGGTAAAGAATCCATGGAGGTCTTTGAGTTATGCTGTTTGGGATGTTTTGGTCGTTTTTGCAATGGCAGCCATAGCCAAATACTTAGACAGTTGGTATGCTTGGCCAATCTACTGGGTTGCTCAGGGAACCATGTTTTGGGCTGTGTTTGTTATCGGACACGATTGTGGCCATGGAAGCTTCTCAGACTCTCGCTTGCTGAATAATTTTGTGGGGCATATTATGCACTCTGCCATTCTTGTACCTTATCATGGCTGGAGAATTAGCCACAGAACTCACCATCGGAACCATGGAAATGTTGAGAAAGATGAGTCTTGGGTTCCAATGACCGAGTCGCTCTACAAAAAATTGGATAATAGCACAAAAACGTTGAGATTCACAATTCCTTTTCCGTTCCTCGCTTATCCGGTTTATCTGTTTTATAGATCTCCTGGTAAAGAAGGATCTCACTTCCATCCAAGCAGTGACCTATTCTCCCCGAATGAACGATTTGATGTTATAACTTCAACTGCTTCGGTTGTTCTAGCGGCTGCTTTGCTGTTGTATTTCTCCATTGTGCAAAGCCCTATTCAAATGCTTAAGTTATATTTTGTTCCTTATTGGATTTTTGTGATGTGGTTGGACATTGTCACATACTTGCATCACCATGGTTACGAGACAAAGCTCCCTTGGTATCGCGGCAAGGAATGGAGTTACCTGCGAGGAGGGCTTACAACCATGGATCGTGATTACGGAATGTTTAACAAGATCCATCATGATATTGGTACCCATGTTATACATCATTTGTTTCCTCAAATTCCACATTATCACCTGGAAGAAGCAACGAAGGCAGCGAAGCCGGTTCTAGGGAAGTACTATCGCGAGCCAAAAAAATCAGGGCCAATTCCGTTTCACTTGTTCAAGATCTTGGCTACAAGCATCTATGAAGATAACTATGTCAGTGACGATGGAGAAATAGACTTTCGACTTCCTCTGGAGCAAAATAGGACCAAATGGATGAATTTTGGAGTAATTCCAGTTGGAGGACGTTCATATATGGCTTGGCCGTCTAGAGTTTTTCCTTACGCTTTCTTTTATGCAACTTTGAAGACAGAGAGAATTGCTAGGGTTTTGGAGATTTTCTACTTGAAGGTTAAAATGGATTCATTCATTTCTTTGCGGGAATCGAGTTACTTGAGGAGGGATTACAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

432

Amino Acids

50.49

Weight (kDa)

9.03

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	4 - 57	1.4e-25	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	65 - 319	1.2e-33	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	804
Acc65I	GGTACC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	863
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccII	CGCG	2 cut(s)	777, 960
AciI	CCGC	3 cut(s)	626, 777, 1258
AclI	AACGTT	1 cut(s)	467
AclWI	GGATC	3 cut(s)	550, 828, 841
AcoI	YGGCCR	3 cut(s)	203, 268, 1142
AcsI	RAATTY	2 cut(s)	894, 1099
AfaI	GTAC	3 cut(s)	342, 865, 953
AfiI	CCNNNNNNNGG	4 cut(s)	237, 350, 944, 1121
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	6 cut(s)	61, 606, 671, 1000, 1186, 1228
AjnI	CCWGG	2 cut(s)	529, 909
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	279, 763
AluI	AGCT	2 cut(s)	279, 763
Alw26I	GTCTC	2 cut(s)	15, 749
AlwI	GGATC	3 cut(s)	550, 828, 841
AoxI	GGCC	4 cut(s)	203, 268, 977, 1142
ApeKI	GCWGC	3 cut(s)	167, 629, 929
ApoI	RAATTY	2 cut(s)	894, 1099
Asp718I	GGTACC	1 cut(s)	863
AspS9I	GGNCC	2 cut(s)	977, 1086
AsuHPI	GGTGA	3 cut(s)	368, 734, 899
AvaII	GGWCC	1 cut(s)	1086
BaeGI	GKGCMC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BalI	TGGCCA	2 cut(s)	205, 270
BanI	GGYRCC	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	1193
BbvI	GCAGC	3 cut(s)	179, 616, 941
BccI	CCATC	4 cut(s)	387, 561, 858, 1040
BceAI	ACGGC	1 cut(s)	1129
BciT130I	CCWGG	2 cut(s)	531, 911
BcoDI	GTCTC	2 cut(s)	15, 749
BfaI	CTAG	4 cut(s)	623, 944, 1149, 1203
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	804
BglII	AGATCT	2 cut(s)	524, 1002
BisI	GCNGC	5 cut(s)	168, 627, 630, 778, 930
BlsI	GCNGC	5 cut(s)	169, 628, 631, 779, 931
BmcAI	AGTACT	1 cut(s)	953
Bme1390I	CCNGG	2 cut(s)	531, 911
Bme18I	GGWCC	1 cut(s)	1086
BmgT120I	GGNCC	2 cut(s)	977, 1086
BmiI	GGNNCC	4 cut(s)	229, 386, 420, 865
BmrFI	CCNGG	2 cut(s)	531, 911
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	3 cut(s)	70, 748, 1026
BmuI	ACTGGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	1193
BpmI	CTGGAG	2 cut(s)	376, 1094
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	1294
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	6 cut(s)	113, 271, 388, 745, 767, 816
BsaWI	WCCGGW	2 cut(s)	17, 505
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 557, 587
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 350, 944, 1121
Bse118I	RCCGGY	1 cut(s)	937
Bse1I	ACTGG	2 cut(s)	218, 1115
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	531, 911
BseDI	CCNNGG	6 cut(s)	113, 271, 388, 745, 767, 816
BseGI	GGATG	3 cut(s)	148, 553, 1101
BseLI	CCNNNNNNNGG	4 cut(s)	237, 350, 944, 1121
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	3 cut(s)	60, 236, 297
BseNI	ACTGG	2 cut(s)	218, 1115
BseRI	GAGGAG	2 cut(s)	816, 1291
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	3 cut(s)	179, 616, 941
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	777, 960
BshFI	GGCC	4 cut(s)	205, 270, 979, 1144
BshNI	GGYRCC	1 cut(s)	863
BsiSI	CCGG	3 cut(s)	18, 506, 938
BslI	CCNNNNNNNGG	4 cut(s)	237, 350, 944, 1121
BsmAI	GTCTC	2 cut(s)	15, 749
BsnI	GGCC	4 cut(s)	205, 270, 979, 1144
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
Bsp19I	CCATGG	5 cut(s)	113, 271, 388, 745, 816
Bsp68I	TCGCGA	1 cut(s)	960
BspACI	CCGC	3 cut(s)	626, 777, 1258
BspANI	GGCC	4 cut(s)	205, 270, 979, 1144
BspCNI	CTCAG	3 cut(s)	61, 235, 296
BspFNI	CGCG	2 cut(s)	777, 960
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	4 cut(s)	229, 386, 420, 865
BspMI	ACCTGC	1 cut(s)	804
BspPI	GGATC	3 cut(s)	550, 828, 841
BspT107I	GGYRCC	1 cut(s)	863
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	937
BsrI	ACTGG	2 cut(s)	218, 1115
BssAI	RCCGGY	1 cut(s)	937
BssECI	CCNNGG	6 cut(s)	113, 271, 388, 745, 767, 816
BssMI	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
BssT1I	CCWWGG	6 cut(s)	113, 271, 388, 745, 767, 816
Bst2UI	CCWGG	2 cut(s)	531, 911
Bst4CI	ACNGT	3 cut(s)	57, 191, 1292
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	296, 962
BstDEI	CTNAG	4 cut(s)	69, 184, 222, 283
BstDSI	CCRYGG	5 cut(s)	113, 271, 388, 745, 816
BstF5I	GGATG	3 cut(s)	148, 553, 1101
BstFNI	CGCG	2 cut(s)	777, 960
BstKTI	GATC	6 cut(s)	75, 527, 545, 823, 849, 1005
BstMAI	GTCTC	2 cut(s)	15, 749
BstMBI	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 173, 276, 322, 805, 926
BstNI	CCWGG	2 cut(s)	531, 911
BstSCI	CCNGG	2 cut(s)	529, 909
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	2 cut(s)	777, 960
BstV1I	GCAGC	3 cut(s)	179, 616, 941
BstV2I	GAAGAC	1 cut(s)	1193
BstX2I	RGATCY	4 cut(s)	524, 542, 846, 1002
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	4 cut(s)	524, 542, 846, 1002
BsuRI	GGCC	4 cut(s)	205, 270, 979, 1144
BtgI	CCRYGG	5 cut(s)	113, 271, 388, 745, 816
BtsCI	GGATG	3 cut(s)	148, 553, 1101
BtsI	GCAGTG	2 cut(s)	94, 568
BtsIMutI	CAGTG	3 cut(s)	94, 568, 1045
BtuMI	TCGCGA	1 cut(s)	960
BveI	ACCTGC	1 cut(s)	804
Cac8I	GCNNGC	2 cut(s)	296, 962
CciI	TCATGA	1 cut(s)	853
Cfr10I	RCCGGY	1 cut(s)	937
Cfr13I	GGNCC	2 cut(s)	977, 1086
Csp6I	GTAC	3 cut(s)	341, 864, 952
CviAII	CATG	9 cut(s)	114, 232, 272, 350, 389, 746, 817, 854, 869
CviQI	GTAC	3 cut(s)	341, 864, 952
DdeI	CTNAG	4 cut(s)	69, 184, 222, 283
DpnI	GATC	6 cut(s)	74, 526, 544, 822, 848, 1004
DpnII	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
EaeI	YGGCCR	3 cut(s)	203, 268, 1142
Eco130I	CCWWGG	6 cut(s)	113, 271, 388, 745, 767, 816
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	1086
EcoRII	CCWGG	2 cut(s)	529, 909
EcoT14I	CCWWGG	6 cut(s)	113, 271, 388, 745, 767, 816
ErhI	CCWWGG	6 cut(s)	113, 271, 388, 745, 767, 816
FaeI	CATG	9 cut(s)	117, 235, 275, 353, 392, 749, 820, 857, 872
FatI	CATG	9 cut(s)	113, 231, 271, 349, 388, 745, 816, 853, 868
FauI	CCCGC	1 cut(s)	1251
Fnu4HI	GCNGC	5 cut(s)	168, 627, 630, 778, 930
FokI	GGATG	3 cut(s)	155, 540, 1108
Fsp4HI	GCNGC	5 cut(s)	168, 627, 630, 778, 930
FspBI	CTAG	4 cut(s)	623, 944, 1149, 1203
GluI	GCNGC	5 cut(s)	168, 627, 630, 778, 930
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	2 cut(s)	376, 1094
HaeIII	GGCC	4 cut(s)	205, 270, 979, 1144
HapII	CCGG	3 cut(s)	18, 506, 938
Hin1II	CATG	9 cut(s)	117, 235, 275, 353, 392, 749, 820, 857, 872
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	7 cut(s)	109, 287, 410, 431, 474, 1241, 1262
HpaII	CCGG	3 cut(s)	18, 506, 938
HphI	GGTGA	3 cut(s)	368, 734, 899
Hpy188I	TCNGA	4 cut(s)	77, 257, 286, 384
Hpy188III	TCNNGA	7 cut(s)	61, 824, 854, 959, 1000, 1073, 1149
HpyAV	CCTTC	3 cut(s)	533, 919, 1222
HpyCH4III	ACNGT	3 cut(s)	57, 191, 1292
HpyCH4IV	ACGT	2 cut(s)	467, 1126
HpyCH4V	TGCA	6 cut(s)	83, 161, 325, 658, 739, 1178
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 173, 276, 322, 805, 926
HpyF3I	CTNAG	4 cut(s)	69, 184, 222, 283
HpySE526I	ACGT	2 cut(s)	467, 1126
Hsp92II	CATG	9 cut(s)	117, 235, 275, 353, 392, 749, 820, 857, 872
KpnI	GGTACC	1 cut(s)	867
Kzo9I	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
LmnI	GCTCC	2 cut(s)	768, 1075
Lsp1109I	GCAGC	3 cut(s)	179, 616, 941
LweI	GCATC	3 cut(s)	70, 748, 1026
MaeI	CTAG	4 cut(s)	623, 944, 1149, 1203
MaeII	ACGT	2 cut(s)	467, 1126
MaeIII	GTNAC	7 cut(s)	13, 563, 727, 749, 791, 1040, 1268
MalI	GATC	6 cut(s)	74, 526, 544, 822, 848, 1004
MboI	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
MboII	GAAGA	3 cut(s)	926, 1037, 1198
MflI	RGATCY	4 cut(s)	524, 542, 846, 1002
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	2 cut(s)	205, 270
MluCI	AATT	9 cut(s)	304, 360, 446, 480, 894, 981, 1099, 1110, 1197
MluNI	TGGCCA	2 cut(s)	205, 270
MlyI	GAGTC	3 cut(s)	281, 419, 440
MmeI	TCCRAC	2 cut(s)	699, 1099
Mox20I	TGGCCA	2 cut(s)	205, 270
MscI	TGGCCA	2 cut(s)	205, 270
MseI	TTAA	3 cut(s)	678, 840, 1233
MslI	CAYNNNNRTG	3 cut(s)	264, 393, 744
Msp20I	TGGCCA	2 cut(s)	205, 270
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	3 cut(s)	18, 506, 938
MspR9I	CCNGG	2 cut(s)	531, 911
MvaI	CCWGG	2 cut(s)	531, 911
MvnI	CGCG	2 cut(s)	777, 960
MwoI	GCNNNNNNNGC	6 cut(s)	167, 173, 276, 322, 805, 926
NcoI	CCATGG	5 cut(s)	113, 271, 388, 745, 816
NdeII	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
NlaIII	CATG	9 cut(s)	117, 235, 275, 353, 392, 749, 820, 857, 872
NlaIV	GGNNCC	4 cut(s)	229, 386, 420, 865
NmuCI	GTSAC	4 cut(s)	13, 563, 727, 1040
NruI	TCGCGA	1 cut(s)	960
OliI	CACNNNNGTG	1 cut(s)	264
PagI	TCATGA	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	929
PfeI	GAWTC	4 cut(s)	109, 474, 1241, 1262
PflFI	GACNNNGTC	2 cut(s)	430, 725
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	169, 628, 631, 779, 931
PleI	GAGTC	3 cut(s)	281, 418, 439
PpsI	GAGTC	3 cut(s)	281, 418, 439
PsiI	TTATAA	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	529, 909
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	529, 909
PspN4I	GGNNCC	4 cut(s)	229, 386, 420, 865
PspPI	GGNCC	2 cut(s)	977, 1086
PsuI	RGATCY	4 cut(s)	524, 542, 846, 1002
PsyI	GACNNNGTC	2 cut(s)	430, 725
RruI	TCGCGA	1 cut(s)	960
RsaI	GTAC	3 cut(s)	342, 865, 953
RsaNI	GTAC	3 cut(s)	341, 864, 952
RseI	CAYNNNNRTG	3 cut(s)	264, 393, 744
SaqAI	TTAA	3 cut(s)	678, 840, 1233
SatI	GCNGC	5 cut(s)	168, 627, 630, 778, 930
Sau3AI	GATC	6 cut(s)	72, 524, 542, 820, 846, 1002
Sau96I	GGNCC	2 cut(s)	977, 1086
ScaI	AGTACT	1 cut(s)	953
SchI	GAGTC	3 cut(s)	281, 419, 440
ScrFI	CCNGG	2 cut(s)	531, 911
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	3 cut(s)	70, 748, 1026
SinI	GGWCC	1 cut(s)	1086
SmiMI	CAYNNNNRTG	3 cut(s)	264, 393, 744
SmlI	CTYRAG	2 cut(s)	677, 1273
SmoI	CTYRAG	2 cut(s)	677, 1273
Sse9I	AATT	9 cut(s)	304, 360, 446, 480, 894, 981, 1099, 1110, 1197
SsiI	CCGC	3 cut(s)	626, 777, 1258
SspMI	CTAG	4 cut(s)	623, 944, 1149, 1203
StyD4I	CCNGG	2 cut(s)	529, 909
StyI	CCWWGG	6 cut(s)	113, 271, 388, 745, 767, 816
TaaI	ACNGT	3 cut(s)	57, 191, 1292
TaiI	ACGT	2 cut(s)	470, 1129
TaqI	TCGA	2 cut(s)	1063, 1265
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	9 cut(s)	304, 360, 446, 480, 894, 981, 1099, 1110, 1197
TatI	WGTACW	1 cut(s)	951
TauI	GCSGC	2 cut(s)	629, 780
TfiI	GAWTC	4 cut(s)	109, 474, 1241, 1262
Tru1I	TTAA	3 cut(s)	678, 840, 1233
Tru9I	TTAA	3 cut(s)	678, 840, 1233
TscAI	CASTG	3 cut(s)	101, 568, 1045
TseFI	GTSAC	4 cut(s)	13, 563, 727, 1040
TseI	GCWGC	3 cut(s)	167, 629, 929
Tsp45I	GTSAC	4 cut(s)	13, 563, 727, 1040
TspDTI	ATGAA	6 cut(s)	597, 1038, 1112, 1119, 1233, 1237
TspGWI	ACGGA	3 cut(s)	480, 846, 975
TspRI	CASTG	3 cut(s)	101, 568, 1045
Tth111I	GACNNNGTC	2 cut(s)	430, 725
Van91I	CCANNNNNTGG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	1086
XapI	RAATTY	2 cut(s)	894, 1099
XbaI	TCTAGA	1 cut(s)	1148
XcmI	CCANNNNNNNNNTGG	2 cut(s)	386, 857
XspI	CTAG	4 cut(s)	623, 944, 1149, 1203
ZrmI	AGTACT	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.