Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

4285303 .. 4286524

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTAAGGTGTACCCTTGTGCACCCATCATATCACTGTGCTTACGCTTATAAATATAAACTTTCTGATCTTAACCTCACTGCCAGTAGCAGCCCTCTTGTCTGCTCCACAGTGGATACAGAGATTTTGAGCCAGTGGTTTCCTCCTCCTCCACCAAAGGATTCAACTTTTGCTACAATGGTGGAAACTCAGACTCAGAAGCAGCAGAGCAAGCCCATCAATGGCGTCAATGGGATCCATAACCACCACCATGACGAAGCAGATTTCGACCCAAGTGCCCCTCCTCCATTCAAGATAGCTGAGATCCGAGCTGCCATTCCCCAACACTGCTGGGTCAAGGATCCATGGAGATCTCTGAGCTATGTTTTCAGGGATTTGTTTGCGATTTCTGCAATGGCAGCTGCTGCCATTTACTTGGAAAGTTGGTATCTTTGGCCTTTGTACTGGGCTGCTCAGGGAACCATGTTCTGGGCTGTCTTTGTTCTCGGACATGATTGTGGCCATGGAAGCTTTTCAGACAGTAGAATTCTGAACAGTGTTGTGGGGCATATATTGCATTCTGCAATTCTTGTACCTTATAATGGATGGAGAATTAGCCACAGAACTCACCATCAGAACCATGGACATGTTGAGAACGATGAGTCATGGGTTCCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

220

Amino Acids

24.8

Weight (kDa)

6.44

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	66 - 134	5.2e-27	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	142 - 217	1.4e-11	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	51, 579
AccB7I	CCANNNNNTGG	1 cut(s)	468
AclWI	GGATC	5 cut(s)	229, 242, 298, 335, 348
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	3 cut(s)	13, 443, 573
AfiI	CCNNNNNNNGG	3 cut(s)	221, 468, 581
AflIII	ACRYGT	1 cut(s)	625
AgsI	TTSAA	2 cut(s)	165, 292
AluBI	AGCT	6 cut(s)	299, 311, 360, 401, 510, 657
AluI	AGCT	6 cut(s)	299, 311, 360, 401, 510, 657
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	5 cut(s)	229, 242, 298, 335, 348
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	434, 499
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	7 cut(s)	90, 202, 311, 398, 401, 404, 449
ApoI	RAATTY	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	599
BaeGI	GKGCMC	2 cut(s)	24, 280
BalI	TGGCCA	1 cut(s)	501
BamHI	GGATCC	2 cut(s)	234, 340
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	7 cut(s)	102, 214, 298, 388, 391, 410, 436
BccI	CCATC	4 cut(s)	34, 224, 579, 618
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciVI	GTATCC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	654
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	7 cut(s)	91, 203, 312, 399, 402, 405, 450
BlsI	GCNGC	7 cut(s)	92, 204, 313, 400, 403, 406, 451
BmiI	GGNNCC	4 cut(s)	236, 342, 460, 651
BmrI	ACTGGG	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	344, 502, 619
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 468, 581
Bse1I	ACTGG	3 cut(s)	84, 133, 449
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	344, 502, 619
BseGI	GGATG	1 cut(s)	590
BseLI	CCNNNNNNNGG	3 cut(s)	221, 468, 581
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	5 cut(s)	203, 209, 291, 347, 467
BseNI	ACTGG	3 cut(s)	84, 133, 449
BseRI	GAGGAG	3 cut(s)	135, 138, 273
BseSI	GKGCMC	2 cut(s)	24, 280
BseXI	GCAGC	7 cut(s)	102, 214, 298, 388, 391, 410, 436
BseYI	CCCAGC	1 cut(s)	330
BshFI	GGCC	2 cut(s)	436, 501
BsiHKAI	GWGCWC	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	221, 468, 581
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	436, 501
Bsp1286I	GDGCHC	2 cut(s)	24, 280
Bsp143I	GATC	5 cut(s)	67, 234, 303, 340, 350
Bsp19I	CCATGG	3 cut(s)	344, 502, 619
BspANI	GGCC	2 cut(s)	436, 501
BspCNI	CTCAG	5 cut(s)	202, 208, 292, 348, 466
BspLI	GGNNCC	4 cut(s)	236, 342, 460, 651
BspPI	GGATC	5 cut(s)	229, 242, 298, 335, 348
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	84, 133, 449
BssECI	CCNNGG	3 cut(s)	344, 502, 619
BssMI	GATC	5 cut(s)	67, 234, 303, 340, 350
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	3 cut(s)	344, 502, 619
Bst4CI	ACNGT	4 cut(s)	38, 112, 521, 536
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	2 cut(s)	404, 553
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	5 cut(s)	189, 195, 300, 356, 453
BstDSI	CCRYGG	3 cut(s)	344, 502, 619
BstF5I	GGATG	1 cut(s)	590
BstKTI	GATC	5 cut(s)	70, 237, 306, 343, 353
BstMBI	GATC	5 cut(s)	67, 234, 303, 340, 350
BstMWI	GCNNNNNNNGC	6 cut(s)	211, 389, 398, 404, 507, 553
BstNSI	RCATGY	1 cut(s)	629
BstSLI	GKGCMC	2 cut(s)	24, 280
BstV1I	GCAGC	7 cut(s)	102, 214, 298, 388, 391, 410, 436
BstX2I	RGATCY	4 cut(s)	234, 303, 340, 350
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	4 cut(s)	234, 303, 340, 350
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	436, 501
BtgI	CCRYGG	3 cut(s)	344, 502, 619
BtsCI	GGATG	1 cut(s)	590
BtsI	GCAGTG	2 cut(s)	78, 325
BtsIMutI	CAGTG	6 cut(s)	34, 78, 117, 140, 325, 541
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	404
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	12, 442, 572
CviAII	CATG	8 cut(s)	251, 345, 463, 491, 503, 620, 626, 645
CviQI	GTAC	3 cut(s)	12, 442, 572
DdeI	CTNAG	5 cut(s)	189, 195, 300, 356, 453
DpnI	GATC	5 cut(s)	69, 236, 305, 342, 352
DpnII	GATC	5 cut(s)	67, 234, 303, 340, 350
EaeI	YGGCCR	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	344, 502, 619
EcoRI	GAATTC	1 cut(s)	525
EcoT14I	CCWWGG	3 cut(s)	344, 502, 619
ErhI	CCWWGG	3 cut(s)	344, 502, 619
FaeI	CATG	8 cut(s)	254, 348, 466, 494, 506, 623, 629, 648
FatI	CATG	8 cut(s)	250, 344, 462, 490, 502, 619, 625, 644
Fnu4HI	GCNGC	7 cut(s)	91, 203, 312, 399, 402, 405, 450
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	7 cut(s)	91, 203, 312, 399, 402, 405, 450
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	7 cut(s)	91, 203, 312, 399, 402, 405, 450
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	436, 501
HgaI	GACGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	8 cut(s)	254, 348, 466, 494, 506, 623, 629, 648
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	3 cut(s)	161, 193, 641
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	2 cut(s)	12, 22
Hpy188I	TCNGA	9 cut(s)	67, 192, 198, 308, 357, 488, 517, 531, 615
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	12, 22
HpyCH4III	ACNGT	4 cut(s)	38, 112, 521, 536
HpyCH4V	TGCA	4 cut(s)	22, 392, 556, 563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	211, 389, 398, 404, 507, 553
HpyF3I	CTNAG	5 cut(s)	189, 195, 300, 356, 453
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	254, 348, 466, 494, 506, 623, 629, 648
Kzo9I	GATC	5 cut(s)	67, 234, 303, 340, 350
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	97, 146, 316, 355, 430, 440, 454
Lsp1109I	GCAGC	7 cut(s)	102, 214, 298, 388, 391, 410, 436
MaeI	CTAG	1 cut(s)	654
MalI	GATC	5 cut(s)	69, 236, 305, 342, 352
MboI	GATC	5 cut(s)	67, 234, 303, 340, 350
MflI	RGATCY	4 cut(s)	234, 303, 340, 350
MhlI	GDGCHC	2 cut(s)	24, 280
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	525, 564, 591
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	2 cut(s)	187, 650
MnlI	CCTC	7 cut(s)	86, 105, 153, 156, 159, 291, 294
Mox20I	TGGCCA	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	3 cut(s)	249, 495, 624
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	556
MwoI	GCNNNNNNNGC	6 cut(s)	211, 389, 398, 404, 507, 553
NcoI	CCATGG	3 cut(s)	344, 502, 619
NdeII	GATC	5 cut(s)	67, 234, 303, 340, 350
NlaIII	CATG	8 cut(s)	254, 348, 466, 494, 506, 623, 629, 648
NlaIV	GGNNCC	4 cut(s)	236, 342, 460, 651
NspI	RCATGY	1 cut(s)	629
PciI	ACATGT	1 cut(s)	625
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	468
PkrI	GCNGC	7 cut(s)	92, 204, 313, 400, 403, 406, 451
PleI	GAGTC	2 cut(s)	187, 649
PpsI	GAGTC	2 cut(s)	187, 649
PscI	ACATGT	1 cut(s)	625
PsiI	TTATAA	2 cut(s)	51, 579
PspFI	CCCAGC	1 cut(s)	330
PspN4I	GGNNCC	4 cut(s)	236, 342, 460, 651
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	4 cut(s)	234, 303, 340, 350
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	3 cut(s)	13, 443, 573
RsaNI	GTAC	3 cut(s)	12, 442, 572
RseI	CAYNNNNRTG	3 cut(s)	249, 495, 624
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	7 cut(s)	91, 203, 312, 399, 402, 405, 450
Sau3AI	GATC	5 cut(s)	67, 234, 303, 340, 350
SchI	GAGTC	2 cut(s)	187, 650
SduI	GDGCHC	2 cut(s)	24, 280
SetI	ASST	9 cut(s)	11, 78, 301, 313, 362, 403, 512, 577, 659
SmiMI	CAYNNNNRTG	3 cut(s)	249, 495, 624
Sse9I	AATT	3 cut(s)	525, 564, 591
SspMI	CTAG	1 cut(s)	654
StyI	CCWWGG	3 cut(s)	344, 502, 619
TaaI	ACNGT	4 cut(s)	38, 112, 521, 536
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	525, 564, 591
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	6 cut(s)	41, 85, 117, 140, 332, 541
TseI	GCWGC	7 cut(s)	90, 202, 311, 398, 401, 404, 449
TspRI	CASTG	6 cut(s)	41, 85, 117, 140, 332, 541
Van91I	CCANNNNNTGG	1 cut(s)	468
VneI	GTGCAC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.