Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

5431471 .. 5433323

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1068000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAACTATTGTAACTGGAGACCAAGTTGATTTTGACCCAAGTGCCCCTCCACCGTTCAAGATTGCTGATATCAGAGATGCAATCCCCAAACACTGCTGGGTAAAGAATCCATGGAGGTCTTTGAGTTATGTCGTTCGGGATTTTTTGGTCGGTTTTGTACTGTCAGCCATAGCCAAATACTCAGACAGTTGGTATGTTTGGCCAATCTACTGGGTTGCTCAGGGAACCATGTTTTGGGCTGTGTTTGTCATCGGACATGACTGTGGCCATGGAAGCTTCTCAGACTCTCGCTTGCTGAATAGTTTTGTGGGACACATTTCGCACTCTTCCATTCTTGTACCTTATCATGGCTGGAGAATTAGCCACAGAACTCACCATCAGAACCATGGAAATGTTGAGAAAGATGAGTCTTGGGTTCCTATGACTGAGTCGCTCTACAAAAGTTTGGATAATAGCACAAAAACGTTGAGATTCACAATTCCTTTTCCGTTTCTCGCTTATCCTGTTTACCTGTTTTGTAGATCTCCTGGTAAAGAAGGATCTCACTTTCATCCAAGCAGTGGCCTATTCTCCCCAAATGAACGATTAGATGTTATAACTTCAACTGCTTCTGTTGTTTTTGTGATGTGGTTGGACATTGTCACCTACTTGCATCACCATGGTTACGAGACAAAGCTCCCTTGGTATCGCGGCAAGGAATGGAGTTACTTGCGAGGAGGGCTTACAACCGTTGATCGTGATTACGGAATGTTTAACAAGATCCATCATGACATTGGTACCCATGTTATACACCATCTGTTTCCTCAAATTCCACATTATCACCTGGAAGAAGCAACAAAGGCAGCTAAGCCGATTCTAGGGAAGTATTATCGTGAGCCCAAAAATTCAGGGCCAATTCCGTTTCACTTGCTCAAGATCTTAGCTACAAGCCTCATCGAAGATAACTATGTCAGTGACGATGGAGGAATTGTTTTCTATCAGACAGATCCTCAGCGTCTTAAATATTTCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

340

Amino Acids

39.15

Weight (kDa)

7.39

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	7 - 57	8.4e-26	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	65 - 149	8.8e-14	Fatty acid desaturase
FA_desaturase	PF00487	204 - 291	2.1e-10	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc65I	GGTACC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	779
AccB7I	CCANNNNNTGG	2 cut(s)	237, 563
AccII	CGCG	1 cut(s)	693
AciI	CCGC	1 cut(s)	693
AclI	AACGTT	1 cut(s)	467
AclWI	GGATC	3 cut(s)	550, 757, 983
AcoI	YGGCCR	2 cut(s)	203, 268
AcsI	RAATTY	2 cut(s)	810, 886
AfaI	GTAC	3 cut(s)	162, 342, 781
AfiI	CCNNNNNNNGG	4 cut(s)	237, 350, 563, 860
AgsI	TTSAA	3 cut(s)	61, 606, 1012
AjnI	CCWGG	2 cut(s)	529, 825
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	4 cut(s)	279, 679, 848, 926
AluI	AGCT	4 cut(s)	279, 679, 848, 926
Alw26I	GTCTC	2 cut(s)	15, 665
AlwI	GGATC	3 cut(s)	550, 757, 983
AoxI	GGCC	4 cut(s)	203, 268, 565, 893
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	2 cut(s)	810, 886
Asp718I	GGTACC	1 cut(s)	779
AspS9I	GGNCC	1 cut(s)	893
AsuHPI	GGTGA	4 cut(s)	368, 637, 650, 815
BaeGI	GKGCMC	1 cut(s)	49
BaeI	ACNNNNGTAYC	4 cut(s)	763, 771, 796, 804
BalI	TGGCCA	2 cut(s)	205, 270
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	882
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	1 cut(s)	857
BccI	CCATC	4 cut(s)	387, 774, 804, 956
BciT130I	CCWGG	2 cut(s)	531, 827
BcoDI	GTCTC	2 cut(s)	15, 665
BfaI	CTAG	1 cut(s)	860
BglII	AGATCT	2 cut(s)	524, 918
BisI	GCNGC	2 cut(s)	694, 846
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	2 cut(s)	695, 847
Bme1390I	CCNGG	2 cut(s)	531, 827
BmgT120I	GGNCC	1 cut(s)	893
BmiI	GGNNCC	3 cut(s)	229, 420, 781
BmrFI	CCNGG	2 cut(s)	531, 827
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	70, 664
BmuI	ACTGGG	1 cut(s)	223
BpmI	CTGGAG	2 cut(s)	39, 376
Bpu10I	CCTNAGC	2 cut(s)	222, 993
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	1 cut(s)	899
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	5 cut(s)	113, 271, 388, 661, 683
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 957, 987
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 350, 563, 860
Bse1I	ACTGG	2 cut(s)	22, 218
BseBI	CCWGG	2 cut(s)	531, 827
BseDI	CCNNGG	5 cut(s)	113, 271, 388, 661, 683
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	4 cut(s)	237, 350, 563, 860
BseMII	CTCAG	5 cut(s)	198, 236, 297, 420, 1007
BseNI	ACTGG	2 cut(s)	22, 218
BseRI	GAGGAG	1 cut(s)	732
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	857
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	693
BshFI	GGCC	4 cut(s)	205, 270, 567, 895
BshNI	GGYRCC	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	4 cut(s)	237, 350, 563, 860
BsmAI	GTCTC	2 cut(s)	15, 665
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	4 cut(s)	205, 270, 567, 895
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	49, 882
Bsp143I	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp19I	CCATGG	4 cut(s)	113, 271, 388, 661
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	4 cut(s)	205, 270, 567, 895
BspCNI	CTCAG	5 cut(s)	197, 235, 296, 421, 1006
BspFNI	CGCG	1 cut(s)	693
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	3 cut(s)	229, 420, 781
BspPI	GGATC	3 cut(s)	550, 757, 983
BspT107I	GGYRCC	1 cut(s)	779
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	22, 218
BssECI	CCNNGG	5 cut(s)	113, 271, 388, 661, 683
BssMI	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
BssT1I	CCWWGG	5 cut(s)	113, 271, 388, 661, 683
Bst2UI	CCWGG	2 cut(s)	531, 827
Bst4CI	ACNGT	5 cut(s)	57, 165, 191, 266, 733
Bst6I	CTCTTC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	7 cut(s)	184, 222, 283, 429, 849, 922, 993
BstDSI	CCRYGG	4 cut(s)	113, 271, 388, 661
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	693
BstKTI	GATC	6 cut(s)	527, 545, 739, 765, 921, 991
BstMAI	GTCTC	2 cut(s)	15, 665
BstMBI	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 721, 842
BstNI	CCWGG	2 cut(s)	531, 827
BstSCI	CCNGG	2 cut(s)	529, 825
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	857
BstX2I	RGATCY	5 cut(s)	524, 542, 762, 918, 988
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	5 cut(s)	524, 542, 762, 918, 988
BsuRI	GGCC	4 cut(s)	205, 270, 567, 895
BtgI	CCRYGG	4 cut(s)	113, 271, 388, 661
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	2 cut(s)	94, 568
BtsIMutI	CAGTG	3 cut(s)	94, 568, 961
Cac8I	GCNNGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	893
CseI	GACGC	1 cut(s)	986
Csp6I	GTAC	3 cut(s)	161, 341, 780
CviAII	CATG	9 cut(s)	114, 232, 260, 272, 350, 389, 662, 770, 785
CviQI	GTAC	3 cut(s)	161, 341, 780
DdeI	CTNAG	7 cut(s)	184, 222, 283, 429, 849, 922, 993
DpnI	GATC	6 cut(s)	526, 544, 738, 764, 920, 990
DpnII	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
EaeI	YGGCCR	2 cut(s)	203, 268
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	5 cut(s)	113, 271, 388, 661, 683
Eco24I	GRGCYC	1 cut(s)	882
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	529, 825
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	5 cut(s)	113, 271, 388, 661, 683
EcoT38I	GRGCYC	1 cut(s)	882
ErhI	CCWWGG	5 cut(s)	113, 271, 388, 661, 683
FaeI	CATG	9 cut(s)	117, 235, 263, 275, 353, 392, 665, 773, 788
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	9 cut(s)	113, 231, 259, 271, 349, 388, 661, 769, 784
Fnu4HI	GCNGC	2 cut(s)	694, 846
FokI	GGATG	1 cut(s)	540
FriOI	GRGCYC	1 cut(s)	882
Fsp4HI	GCNGC	2 cut(s)	694, 846
FspBI	CTAG	1 cut(s)	860
GluI	GCNGC	2 cut(s)	694, 846
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	2 cut(s)	39, 376
HaeIII	GGCC	4 cut(s)	205, 270, 567, 895
HgaI	GACGC	1 cut(s)	986
Hin1II	CATG	9 cut(s)	117, 235, 263, 275, 353, 392, 665, 773, 788
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	6 cut(s)	109, 287, 410, 431, 474, 856
HphI	GGTGA	4 cut(s)	368, 637, 650, 815
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	6 cut(s)	77, 187, 257, 286, 384, 984
Hpy188III	TCNNGA	7 cut(s)	61, 140, 740, 770, 875, 916, 1012
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	5 cut(s)	57, 165, 191, 266, 733
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	2 cut(s)	83, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 721, 842
HpyF3I	CTNAG	7 cut(s)	184, 222, 283, 429, 849, 922, 993
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	9 cut(s)	117, 235, 263, 275, 353, 392, 665, 773, 788
KpnI	GGTACC	1 cut(s)	783
Kzo9I	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
LmnI	GCTCC	1 cut(s)	684
Lsp1109I	GCAGC	1 cut(s)	857
LweI	GCATC	2 cut(s)	70, 664
MaeI	CTAG	1 cut(s)	860
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	5 cut(s)	13, 643, 665, 707, 956
MalI	GATC	6 cut(s)	526, 544, 738, 764, 920, 990
MboI	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
MboII	GAAGA	3 cut(s)	321, 842, 953
MflI	RGATCY	5 cut(s)	524, 542, 762, 918, 988
MhlI	GDGCHC	2 cut(s)	49, 882
MlsI	TGGCCA	2 cut(s)	205, 270
MluCI	AATT	7 cut(s)	360, 480, 810, 886, 897, 969, 1015
MluNI	TGGCCA	2 cut(s)	205, 270
MlyI	GAGTC	3 cut(s)	281, 419, 440
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	8 cut(s)	60, 111, 710, 713, 816, 944, 959, 1002
Mox20I	TGGCCA	2 cut(s)	205, 270
MscI	TGGCCA	2 cut(s)	205, 270
MseI	TTAA	2 cut(s)	756, 1002
MslI	CAYNNNNRTG	3 cut(s)	264, 393, 660
Msp20I	TGGCCA	2 cut(s)	205, 270
MspR9I	CCNGG	2 cut(s)	531, 827
MvaI	CCWGG	2 cut(s)	531, 827
MvnI	CGCG	1 cut(s)	693
MwoI	GCNNNNNNNGC	3 cut(s)	276, 721, 842
NcoI	CCATGG	4 cut(s)	113, 271, 388, 661
NdeII	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
NlaIII	CATG	9 cut(s)	117, 235, 263, 275, 353, 392, 665, 773, 788
NlaIV	GGNNCC	3 cut(s)	229, 420, 781
NmuCI	GTSAC	2 cut(s)	643, 956
PagI	TCATGA	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	109, 474, 856
PflFI	GACNNNGTC	2 cut(s)	430, 641
PflMI	CCANNNNNTGG	2 cut(s)	237, 563
PkrI	GCNGC	2 cut(s)	695, 847
PleI	GAGTC	3 cut(s)	281, 418, 439
PpsI	GAGTC	3 cut(s)	281, 418, 439
PsiI	TTATAA	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	529, 825
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	2 cut(s)	529, 825
PspN4I	GGNNCC	3 cut(s)	229, 420, 781
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	5 cut(s)	524, 542, 762, 918, 988
PsyI	GACNNNGTC	2 cut(s)	430, 641
RsaI	GTAC	3 cut(s)	162, 342, 781
RsaNI	GTAC	3 cut(s)	161, 341, 780
RseI	CAYNNNNRTG	3 cut(s)	264, 393, 660
SaqAI	TTAA	2 cut(s)	756, 1002
SatI	GCNGC	2 cut(s)	694, 846
Sau3AI	GATC	6 cut(s)	524, 542, 736, 762, 918, 988
Sau96I	GGNCC	1 cut(s)	893
SchI	GAGTC	3 cut(s)	281, 419, 440
ScrFI	CCNGG	2 cut(s)	531, 827
SduI	GDGCHC	2 cut(s)	49, 882
SfaNI	GCATC	2 cut(s)	70, 664
SmiMI	CAYNNNNRTG	3 cut(s)	264, 393, 660
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
Sse9I	AATT	7 cut(s)	360, 480, 810, 886, 897, 969, 1015
SsiI	CCGC	1 cut(s)	693
SspI	AATATT	1 cut(s)	1007
SspMI	CTAG	1 cut(s)	860
StyD4I	CCNGG	2 cut(s)	529, 825
StyI	CCWWGG	5 cut(s)	113, 271, 388, 661, 683
TaaI	ACNGT	5 cut(s)	57, 165, 191, 266, 733
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	939
TasI	AATT	7 cut(s)	360, 480, 810, 886, 897, 969, 1015
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	3 cut(s)	109, 474, 856
Tru1I	TTAA	2 cut(s)	756, 1002
Tru9I	TTAA	2 cut(s)	756, 1002
TscAI	CASTG	3 cut(s)	101, 568, 961
TseFI	GTSAC	2 cut(s)	643, 956
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	2 cut(s)	643, 956
TspDTI	ATGAA	2 cut(s)	542, 597
TspGWI	ACGGA	3 cut(s)	480, 762, 891
TspRI	CASTG	3 cut(s)	101, 568, 961
Tth111I	GACNNNGTC	2 cut(s)	430, 641
Van91I	CCANNNNNTGG	2 cut(s)	237, 563
XapI	RAATTY	2 cut(s)	810, 886
XcmI	CCANNNNNNNNNTGG	2 cut(s)	386, 773
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.