FvH4_3g38780

Omega-3 fatty acid desaturase, endoplasmic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
33059790 .. 33066758
6969 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38780.t2

Sequence Viewer

Length: 1164 bp
ATGGAGGGTGTTGAAGCCAAACCCATGAAGGGTGTCAATGGGATCCACGACCCCAACAACAAAGAAGACCACGATGCAGATTTCGACCCAAGTGCTCCACCTCCATTCAAGATAGCTGAGATCCGAGCCGCCATTCCCAAACACTGTTGGGTGAAGAACCCATGGAGGTCCTTCAGCTATGTGTTGAGGGACTTGGTTGTCATATTTGCAATGGCAGCTGCAGCCATTTACTTTAACAATTGGTATGTCTGGCCACTCTACTGGGCTGCTCAGGGAACCATGTTCTGGGCTCTCTTTGTTCTCGGACATGATTGTGGCCATGGAAGCTTTTCGGACAGCCGCCTGCTCAACAACGTTGTGGGGCATTTTCTGCATTCTGCAATTCTTGTACCTTATAATGGATGGAGAATCAGCCATAGAACTCACCATCAGAACCATGGTCATGTTGAGAATGATGAGTCCTGGGTTCCTCTGACTGAGAAGATCTATACAAGTTTGGATGAAAGTACAAGAAAGTTTAGATTCAGAGTGCCTTACCCCATTTTTGCATATCCTTTCTATCTGTGGACAAGAAGTCCAGGAAAGCAAGGTTCACATTTCAACCCATACAGTGACTTGTTTGCTCCAAATGAAAGAAATGATATCATAACATCAACTGTTTGTTGGACTGTGATGCTTGCCTTCCTTGTCTGTTTGTCCGTTATAGTAGGACCTGTCCAAGTCTTGAAGATCTATGGTGTCCCTTACTGGATTTTCGTAATGTGGTTGGATATGGTAACATATTTGCACCACCATGGTTATGATGAACACAAACTTCCTTGGTACCGCGGCAAGGAGTGGAGTTATCTAAGAGGAGGTCTCACAACCGTTGATCGTGACTATGGATTGATTAACAACATCCACCATGACATTGGCACCCATGTCATCCATCATCTCTTCCCTCAGATTCCACACTATCATCTAGTTGAAGCAACCAGGTCAGCGAAACATGTTCTGGGGAAGTATTACCGGGAGCCAAAAAAATCCGGACCATTTCCATTTCACTTGATCAACAATCTTGTGGCAAGCATGAGCAACGACCACTATGTCAGTGACACCGGTGACATAGTATACTACCAGACTGACCCCAAGCTTTACAAAAGCCTCAAGAATAAGTTGATCTGA

Protein Analysis

388

Amino Acids

44.99

Weight (kDa)

8.2

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 18 - 73 1.8e-28 Domain of unknown function (DUF3474)
FA_desaturase PF00487 81 - 336 7.4e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AasI GACNNNNNNGTC 2 cut(s) 197, 1085
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 822, 914
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 1 cut(s) 1110
AccII CGCG 1 cut(s) 828
AccIII TCCGGA 1 cut(s) 1025
AciI CCGC 4 cut(s) 129, 340, 826, 828
AclI AACGTT 1 cut(s) 354
AclWI GGATC 3 cut(s) 37, 50, 115
AcoI YGGCCR 2 cut(s) 251, 316
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 3 cut(s) 390, 508, 824
AfiI CCNNNNNNNGG 4 cut(s) 29, 285, 398, 832
AflIII ACRYGT 1 cut(s) 988
AgeI ACCGGT 1 cut(s) 1097
AgsI TTSAA 5 cut(s) 14, 109, 601, 727, 968
AhdI GACNNNNNGTC 1 cut(s) 573
AjnI CCWGG 3 cut(s) 461, 577, 974
AluBI AGCT 5 cut(s) 116, 177, 218, 327, 1132
AluI AGCT 5 cut(s) 116, 177, 218, 327, 1132
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 863
AlwI GGATC 3 cut(s) 37, 50, 115
Aor13HI TCCGGA 1 cut(s) 1025
AoxI GGCC 2 cut(s) 251, 316
ApeKI GCWGC 4 cut(s) 215, 218, 221, 266
AsiGI ACCGGT 1 cut(s) 1097
Asp700I GAANNNNTTC 1 cut(s) 328
Asp718I GGTACC 1 cut(s) 822
AspS9I GGNCC 3 cut(s) 168, 710, 1028
AsuC2I CCSGG 1 cut(s) 1010
AsuHPI GGTGA 3 cut(s) 163, 416, 1112
AvaII GGWCC 3 cut(s) 168, 710, 1028
BalI TGGCCA 2 cut(s) 253, 318
BamHI GGATCC 1 cut(s) 42
BanI GGYRCC 2 cut(s) 822, 914
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 4 cut(s) 205, 227, 233, 253
BccI CCATC 3 cut(s) 396, 435, 936
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 3 cut(s) 463, 579, 976
BclI TGATCA 1 cut(s) 1047
BcnI CCSGG 1 cut(s) 1010
BcoDI GTCTC 1 cut(s) 863
BfaI CTAG 1 cut(s) 962
BfmI CTRYAG 1 cut(s) 219
BglII AGATCT 2 cut(s) 483, 729
BisI GCNGC 7 cut(s) 129, 216, 219, 222, 267, 340, 829
BlsI GCNGC 7 cut(s) 130, 217, 220, 223, 268, 341, 830
Bme1390I CCNGG 4 cut(s) 463, 579, 976, 1010
Bme18I GGWCC 3 cut(s) 168, 710, 1028
BmeRI GACNNNNNGTC 1 cut(s) 573
BmgT120I GGNCC 3 cut(s) 168, 710, 1028
BmiI GGNNCC 6 cut(s) 44, 277, 468, 824, 916, 1014
BmrFI CCNGG 4 cut(s) 463, 579, 976, 1010
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 2 cut(s) 64, 663
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 843, 875
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 1130
BpuMI CCSGG 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 7 cut(s) 161, 319, 436, 462, 793, 818, 826
BsaWI WCCGGW 2 cut(s) 1025, 1097
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 285, 398, 832
Bse118I RCCGGY 1 cut(s) 1097
Bse1I ACTGG 2 cut(s) 266, 752
Bse3DI GCAATG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 1025
BseBI CCWGG 3 cut(s) 463, 579, 976
BseDI CCNNGG 7 cut(s) 161, 319, 436, 462, 793, 818, 826
BseGI GGATG 4 cut(s) 407, 505, 897, 924
BseLI CCNNNNNNNGG 4 cut(s) 29, 285, 398, 832
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 4 cut(s) 108, 284, 468, 956
BseNI ACTGG 2 cut(s) 266, 752
BseRI GAGGAG 1 cut(s) 867
BseXI GCAGC 4 cut(s) 205, 227, 233, 253
Bsh1236I CGCG 1 cut(s) 828
BshFI GGCC 2 cut(s) 253, 318
BshNI GGYRCC 2 cut(s) 822, 914
BshTI ACCGGT 1 cut(s) 1097
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 3 cut(s) 1009, 1026, 1098
BslFI GGGAC 2 cut(s) 203, 725
BslI CCNNNNNNNGG 4 cut(s) 29, 285, 398, 832
BsmAI GTCTC 1 cut(s) 863
BsmFI GGGAC 2 cut(s) 203, 725
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 2 cut(s) 253, 318
Bso31I GGTCTC 1 cut(s) 863
Bsp1286I GDGCHC 2 cut(s) 97, 292
Bsp13I TCCGGA 1 cut(s) 1025
Bsp143I GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
Bsp19I CCATGG 4 cut(s) 161, 319, 436, 793
BspACI CCGC 4 cut(s) 129, 340, 826, 828
BspANI GGCC 2 cut(s) 253, 318
BspCNI CTCAG 4 cut(s) 109, 283, 469, 955
BspEI TCCGGA 1 cut(s) 1025
BspFNI CGCG 1 cut(s) 828
BspLI GGNNCC 6 cut(s) 44, 277, 468, 824, 916, 1014
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 3 cut(s) 37, 50, 115
BspT107I GGYRCC 2 cut(s) 822, 914
BspTNI GGTCTC 1 cut(s) 863
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 1097
BsrI ACTGG 2 cut(s) 266, 752
BssAI RCCGGY 1 cut(s) 1097
BssECI CCNNGG 7 cut(s) 161, 319, 436, 462, 793, 818, 826
BssMI GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
BssNAI GTATAC 1 cut(s) 1111
BssT1I CCWWGG 5 cut(s) 161, 319, 436, 793, 818
Bst1107I GTATAC 1 cut(s) 1111
Bst2UI CCWGG 3 cut(s) 463, 579, 976
Bst4CI ACNGT 5 cut(s) 146, 611, 658, 670, 868
Bst6I CTCTTC 1 cut(s) 941
BstAPI GCANNNNNTGC 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 344, 678, 1066
BstDEI CTNAG 5 cut(s) 117, 270, 477, 848, 942
BstDSI CCRYGG 5 cut(s) 161, 319, 436, 793, 826
BstF5I GGATG 4 cut(s) 407, 505, 897, 924
BstFNI CGCG 1 cut(s) 828
BstKTI GATC 7 cut(s) 45, 123, 486, 732, 874, 1050, 1161
BstMAI GTCTC 1 cut(s) 863
BstMBI GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
BstMWI GCNNNNNNNGC 4 cut(s) 215, 221, 324, 370
BstNI CCWGG 3 cut(s) 463, 579, 976
BstNSI RCATGY 1 cut(s) 992
BstSCI CCNGG 4 cut(s) 461, 577, 974, 1008
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 828
BstV1I GCAGC 4 cut(s) 205, 227, 233, 253
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 4 cut(s) 42, 120, 483, 729
BstXI CCANNNNNNTGG 2 cut(s) 261, 911
BstYI RGATCY 4 cut(s) 42, 120, 483, 729
BstZ17I GTATAC 1 cut(s) 1111
BsuRI GGCC 2 cut(s) 253, 318
BtgI CCRYGG 5 cut(s) 161, 319, 436, 793, 826
BtsCI GGATG 4 cut(s) 407, 505, 897, 924
BtsIMutI CAGTG 3 cut(s) 142, 616, 1096
Cac8I GCNNGC 3 cut(s) 344, 678, 1066
Cfr10I RCCGGY 1 cut(s) 1097
Cfr13I GGNCC 3 cut(s) 168, 710, 1028
Cfr42I CCGCGG 1 cut(s) 829
CsiI ACCWGGT 1 cut(s) 974
Csp6I GTAC 3 cut(s) 389, 507, 823
CspAI ACCGGT 1 cut(s) 1097
CviQI GTAC 3 cut(s) 389, 507, 823
DdeI CTNAG 5 cut(s) 117, 270, 477, 848, 942
DpnI GATC 7 cut(s) 44, 122, 485, 731, 873, 1049, 1160
DpnII GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
DrdI GACNNNNNNGTC 2 cut(s) 197, 1085
DriI GACNNNNNGTC 1 cut(s) 573
DseDI GACNNNNNNGTC 2 cut(s) 197, 1085
EaeI YGGCCR 2 cut(s) 251, 316
Eam1104I CTCTTC 1 cut(s) 941
Eam1105I GACNNNNNGTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 941
Eco130I CCWWGG 5 cut(s) 161, 319, 436, 793, 818
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 3 cut(s) 168, 710, 1028
Eco57I CTGAAG 1 cut(s) 157
EcoO109I RGGNCCY 2 cut(s) 168, 710
EcoRII CCWGG 3 cut(s) 461, 577, 974
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 5 cut(s) 161, 319, 436, 793, 818
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 5 cut(s) 161, 319, 436, 793, 818
FaqI GGGAC 2 cut(s) 203, 725
FbaI TGATCA 1 cut(s) 1047
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 7 cut(s) 129, 216, 219, 222, 267, 340, 829
FokI GGATG 4 cut(s) 414, 512, 884, 911
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 7 cut(s) 129, 216, 219, 222, 267, 340, 829
FspBI CTAG 1 cut(s) 962
GluI GCNGC 7 cut(s) 129, 216, 219, 222, 267, 340, 829
HaeIII GGCC 2 cut(s) 253, 318
HapII CCGG 3 cut(s) 1009, 1026, 1098
HindIII AAGCTT 2 cut(s) 325, 1130
HinfI GANTC 4 cut(s) 408, 458, 522, 946
HpaII CCGG 3 cut(s) 1009, 1026, 1098
HphI GGTGA 3 cut(s) 163, 416, 1112
Hpy166II GTNNAC 3 cut(s) 567, 593, 1111
Hpy188I TCNGA 8 cut(s) 125, 305, 334, 432, 474, 527, 945, 1163
Hpy188III TCNNGA 5 cut(s) 109, 724, 875, 1026, 1147
Hpy8I GTNNAC 3 cut(s) 567, 593, 1111
HpyAV CCTTC 3 cut(s) 22, 181, 691
HpyCH4III ACNGT 5 cut(s) 146, 611, 658, 670, 868
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 7 cut(s) 77, 209, 221, 373, 380, 548, 787
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 221, 324, 370
HpyF3I CTNAG 5 cut(s) 117, 270, 477, 848, 942
HpySE526I ACGT 1 cut(s) 354
Kpn2I TCCGGA 1 cut(s) 1025
KpnI GGTACC 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 1047
KspI CCGCGG 1 cut(s) 829
Kzo9I GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
LmnI GCTCC 3 cut(s) 100, 628, 1012
Lsp1109I GCAGC 4 cut(s) 205, 227, 233, 253
LweI GCATC 2 cut(s) 64, 663
MabI ACCWGGT 1 cut(s) 974
MaeI CTAG 1 cut(s) 962
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 5 cut(s) 611, 775, 875, 1091, 1100
MalI GATC 7 cut(s) 44, 122, 485, 731, 873, 1049, 1160
MboI GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
MboII GAAGA 5 cut(s) 77, 166, 493, 739, 928
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 4 cut(s) 42, 120, 483, 729
MhlI GDGCHC 2 cut(s) 97, 292
MlsI TGGCCA 2 cut(s) 253, 318
MluCI AATT 2 cut(s) 238, 381
MluNI TGGCCA 2 cut(s) 253, 318
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 644, 747
MnlI CCTC 8 cut(s) 111, 159, 180, 480, 845, 848, 951, 1154
Mox20I TGGCCA 2 cut(s) 253, 318
MroI TCCGGA 1 cut(s) 1025
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 2 cut(s) 253, 318
MseI TTAA 2 cut(s) 234, 891
MslI CAYNNNNRTG 4 cut(s) 312, 441, 792, 798
Msp20I TGGCCA 2 cut(s) 253, 318
MspA1I CMGCKG 2 cut(s) 218, 828
MspI CCGG 3 cut(s) 1009, 1026, 1098
MspR9I CCNGG 4 cut(s) 463, 579, 976, 1010
MunI CAATTG 1 cut(s) 238
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 3 cut(s) 463, 579, 976
MvnI CGCG 1 cut(s) 828
MwoI GCNNNNNNNGC 4 cut(s) 215, 221, 324, 370
NciI CCSGG 1 cut(s) 1010
NcoI CCATGG 4 cut(s) 161, 319, 436, 793
NdeII GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
NlaIV GGNNCC 6 cut(s) 44, 277, 468, 824, 916, 1014
NmuCI GTSAC 4 cut(s) 611, 875, 1091, 1100
NspI RCATGY 1 cut(s) 992
PciI ACATGT 1 cut(s) 988
PctI GAATGC 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 3 cut(s) 408, 522, 946
PflMI CCANNNNNTGG 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 577
PinAI ACCGGT 1 cut(s) 1097
PkrI GCNGC 7 cut(s) 130, 217, 220, 223, 268, 341, 830
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PpuMI RGGWCCY 2 cut(s) 168, 710
PscI ACATGT 1 cut(s) 988
PsiI TTATAA 1 cut(s) 396
Psp1406I AACGTT 1 cut(s) 354
Psp5II RGGWCCY 2 cut(s) 168, 710
Psp6I CCWGG 3 cut(s) 461, 577, 974
PspGI CCWGG 3 cut(s) 461, 577, 974
PspN4I GGNNCC 6 cut(s) 44, 277, 468, 824, 916, 1014
PspPI GGNCC 3 cut(s) 168, 710, 1028
PspPPI RGGWCCY 2 cut(s) 168, 710
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 4 cut(s) 42, 120, 483, 729
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 390, 508, 824
RsaNI GTAC 3 cut(s) 389, 507, 823
RseI CAYNNNNRTG 4 cut(s) 312, 441, 792, 798
SacII CCGCGG 1 cut(s) 829
SaqAI TTAA 2 cut(s) 234, 891
SatI GCNGC 7 cut(s) 129, 216, 219, 222, 267, 340, 829
Sau3AI GATC 7 cut(s) 42, 120, 483, 729, 871, 1047, 1158
Sau96I GGNCC 3 cut(s) 168, 710, 1028
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 4 cut(s) 463, 579, 976, 1010
SduI GDGCHC 2 cut(s) 97, 292
SexAI ACCWGGT 1 cut(s) 974
SfaNI GCATC 2 cut(s) 64, 663
SfcI CTRYAG 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 829
SgrAI CRCCGGYG 1 cut(s) 1097
SgrBI CCGCGG 1 cut(s) 829
SinI GGWCC 3 cut(s) 168, 710, 1028
SmiMI CAYNNNNRTG 4 cut(s) 312, 441, 792, 798
SmlI CTYRAG 1 cut(s) 1145
SmoI CTYRAG 1 cut(s) 1145
Sse9I AATT 2 cut(s) 238, 381
SsiI CCGC 4 cut(s) 129, 340, 826, 828
SspMI CTAG 1 cut(s) 962
StyD4I CCNGG 4 cut(s) 461, 577, 974, 1008
StyI CCWWGG 5 cut(s) 161, 319, 436, 793, 818
TaaI ACNGT 5 cut(s) 146, 611, 658, 670, 868
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 238, 381
TatI WGTACW 1 cut(s) 506
TauI GCSGC 3 cut(s) 131, 342, 831
TfiI GAWTC 3 cut(s) 408, 522, 946
Tru1I TTAA 2 cut(s) 234, 891
Tru9I TTAA 2 cut(s) 234, 891
TscAI CASTG 3 cut(s) 149, 616, 1096
TseFI GTSAC 4 cut(s) 611, 875, 1091, 1100
TseI GCWGC 4 cut(s) 215, 218, 221, 266
Tsp45I GTSAC 4 cut(s) 611, 875, 1091, 1100
TspDTI ATGAA 4 cut(s) 41, 516, 645, 819
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 3 cut(s) 149, 616, 1096
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 3 cut(s) 168, 710, 1028
XceI RCATGY 1 cut(s) 992
XcmI CCANNNNNNNNNTGG 2 cut(s) 434, 908
XmiI GTMKAC 1 cut(s) 1110
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.