Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

3935915 .. 3939020

Gene Structure 3106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G055900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGTGGAGGCTCAGAGCAAACCCATGAATGGGGTTAATGGGATCCATAACCACAACAAACAAGATGAAGCTGATTTTGACCCAAGTGCCCCTCCTCCCTTTAAGATAGCTGAGATCCGTGCTGCCATTCCCAAACACTGTTGGGTCAAGAATCCATGGAGGTCTATGAGTTATGTCTTCAGGGATTTGTTTGTGATATTTGCAATGGCATCTGCTGCCATTTACTTGGAAAGTTGGTATCTTTGGCCAGTTTACTGGGCTGCTCAAGGAACCATGTTCTGGGCTCTGTTTGTTCTTGGACATGATTGTGGCCATGGGAGCTTTTCAGATAGTCGAACGCTGAACAGTGTTGTGGGGCATATATTGCATTCTGCAATTCTTGTACCTTATAATGGCTGGAGAATCAGCCACAGAACTCACCATCAGAACCATGGACATGTTGAGAATGATGAGTCTTGGGTTCCTCTGACTGAGAAGGTTTATTCAAGTTTGCATGAAAGTACAAGAAAATTCAGATTCAGAGTGCCATACCCCATCTTTGCATACCCTTTCTATCTGTGGACTAGAAGTCCAGGAAAGCAAGGTTCTCATTTCAATCCTTACAGTGACTTGTTTGCCCCAAATGAAAGGAAAGATGTGATAACTTCAACTGTTTGCTGGACAATGATGGTTGCCCTGCTCCTCTATCTGTCCTATGTAGTAGGCCCTGTCCAAATCCTCAAGCTCTACTGTGTCCCTTACTGGATTTTCATAATGTGGATTGATTTGGTCACCTATTTGCATCACCATGGTTACGATCAAAAACTTCCCTGGTACCGTGGCAAGGAATGGAGTTATCTACGGGGAGGCCTCACAACCGTTGATCGTGATTATGGAATGTTCAATAACATCCACCATGACATTGGCACTCATGTGATACATCATCTCTTCCCTCAAATCCCACACTATCACCTAGTGGAAGCTACCAAGGCAGCCAAGCCAGTTCTGGGAAAGTACTATCGGGAGCCAAAGAAATCTGGACCATTTCCGGTTCACTTGATCGATAATCTAATGACAAGCATGAGCAATGATCACTATGTTAGTGACACTGGAGACGTTGTATACTATCAGACTGACCCCAAGCTTTTCAAAAGTCTTAAGAGCAAGTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

385

Amino Acids

44.66

Weight (kDa)

8.77

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	813
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	1101
AclWI	GGATC	3 cut(s)	37, 50, 109
AcoI	YGGCCR	2 cut(s)	245, 310
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	955
AfaI	GTAC	4 cut(s)	384, 502, 815, 995
AfiI	CCNNNNNNNGG	6 cut(s)	29, 30, 279, 392, 823, 986
AflII	CTTAAG	1 cut(s)	1136
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	5 cut(s)	486, 595, 648, 883, 1129
AhdI	GACNNNNNGTC	1 cut(s)	567
AjnI	CCWGG	2 cut(s)	571, 809
AleI	CACNNNNGTG	1 cut(s)	911
AluBI	AGCT	6 cut(s)	71, 110, 321, 724, 962, 1123
AluI	AGCT	6 cut(s)	71, 110, 321, 724, 962, 1123
Alw26I	GTCTC	1 cut(s)	1086
AlwI	GGATC	3 cut(s)	37, 50, 109
AoxI	GGCC	4 cut(s)	245, 310, 703, 847
ApeKI	GCWGC	4 cut(s)	122, 215, 260, 971
ApoI	RAATTY	1 cut(s)	509
Asp718I	GGTACC	1 cut(s)	813
AspS9I	GGNCC	2 cut(s)	704, 1019
AsuHPI	GGTGA	4 cut(s)	410, 763, 776, 941
AvaII	GGWCC	1 cut(s)	1019
BaeGI	GKGCMC	1 cut(s)	91
BalI	TGGCCA	2 cut(s)	247, 312
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	109, 202, 247, 983
BccI	CCATC	3 cut(s)	429, 542, 661
BciT130I	CCWGG	2 cut(s)	573, 811
BclI	TGATCA	1 cut(s)	1069
BcoDI	GTCTC	1 cut(s)	1086
BfaI	CTAG	3 cut(s)	564, 953, 1149
BfrI	CTTAAG	1 cut(s)	1136
BisI	GCNGC	4 cut(s)	123, 216, 261, 972
BlsI	GCNGC	4 cut(s)	124, 217, 262, 973
BmcAI	AGTACT	1 cut(s)	995
Bme1390I	CCNGG	2 cut(s)	573, 811
Bme18I	GGWCC	1 cut(s)	1019
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	704, 1019
BmiI	GGNNCC	5 cut(s)	44, 271, 462, 815, 1005
BmrFI	CCNGG	2 cut(s)	573, 811
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	2 cut(s)	218, 790
BmuI	ACTGGG	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	418, 1110
BpuEI	CTTGAG	2 cut(s)	249, 704
Bsa29I	ATCGAT	1 cut(s)	1041
BsaJI	CCNNGG	7 cut(s)	155, 313, 430, 787, 809, 817, 966
BsaWI	WCCGGW	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 30, 279, 392, 823, 986
Bse1I	ACTGG	5 cut(s)	248, 260, 746, 980, 1093
Bse3DI	GCAATG	2 cut(s)	210, 1072
BseBI	CCWGG	2 cut(s)	573, 811
BseCI	ATCGAT	1 cut(s)	1041
BseDI	CCNNGG	7 cut(s)	155, 313, 430, 787, 809, 817, 966
BseGI	GGATG	1 cut(s)	888
BseLI	CCNNNNNNNGG	6 cut(s)	29, 30, 279, 392, 823, 986
BseMI	GCAATG	2 cut(s)	210, 1072
BseMII	CTCAG	3 cut(s)	26, 102, 462
BseNI	ACTGG	5 cut(s)	248, 260, 746, 980, 1093
BseRI	GAGGAG	2 cut(s)	84, 671
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	4 cut(s)	109, 202, 247, 983
BshFI	GGCC	4 cut(s)	247, 312, 705, 849
BshNI	GGYRCC	1 cut(s)	813
BshVI	ATCGAT	1 cut(s)	1041
BsiSI	CCGG	1 cut(s)	1028
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	6 cut(s)	29, 30, 279, 392, 823, 986
BsmAI	GTCTC	1 cut(s)	1086
BsmBI	CGTCTC	1 cut(s)	1086
BsmFI	GGGAC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	4 cut(s)	247, 312, 705, 849
Bsp1286I	GDGCHC	2 cut(s)	91, 286
Bsp143I	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
Bsp19I	CCATGG	4 cut(s)	155, 313, 430, 787
BspANI	GGCC	4 cut(s)	247, 312, 705, 849
BspCNI	CTCAG	3 cut(s)	25, 103, 463
BspDI	ATCGAT	1 cut(s)	1041
BspLI	GGNNCC	5 cut(s)	44, 271, 462, 815, 1005
BspPI	GGATC	3 cut(s)	37, 50, 109
BspT107I	GGYRCC	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	1136
BsrDI	GCAATG	2 cut(s)	210, 1072
BsrI	ACTGG	5 cut(s)	248, 260, 746, 980, 1093
BssECI	CCNNGG	7 cut(s)	155, 313, 430, 787, 809, 817, 966
BssMI	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
BssNAI	GTATAC	1 cut(s)	1102
BssT1I	CCWWGG	5 cut(s)	155, 313, 430, 787, 966
Bst1107I	GTATAC	1 cut(s)	1102
Bst2UI	CCWGG	2 cut(s)	573, 811
Bst4CI	ACNGT	7 cut(s)	140, 347, 605, 652, 731, 818, 859
Bst6I	CTCTTC	1 cut(s)	932
BstAFI	CTTAAG	1 cut(s)	1136
BstAPI	GCANNNNNTGC	2 cut(s)	215, 364
BstDEI	CTNAG	3 cut(s)	12, 111, 471
BstDSI	CCRYGG	5 cut(s)	155, 313, 430, 787, 817
BstEII	GGTNACC	1 cut(s)	769
BstF5I	GGATG	1 cut(s)	888
BstKTI	GATC	6 cut(s)	45, 117, 799, 865, 1041, 1072
BstMAI	GTCTC	1 cut(s)	1086
BstMBI	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 318, 364, 968
BstNI	CCWGG	2 cut(s)	573, 811
BstNSI	RCATGY	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	571, 809
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	4 cut(s)	109, 202, 247, 983
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	42, 114
BstXI	CCANNNNNNTGG	3 cut(s)	226, 255, 902
BstYI	RGATCY	2 cut(s)	42, 114
BstZ17I	GTATAC	1 cut(s)	1102
Bsu15I	ATCGAT	1 cut(s)	1041
BsuRI	GGCC	4 cut(s)	247, 312, 705, 849
BsuTUI	ATCGAT	1 cut(s)	1041
BtgI	CCRYGG	5 cut(s)	155, 313, 430, 787, 817
BtsCI	GGATG	1 cut(s)	888
BtsIMutI	CAGTG	4 cut(s)	136, 352, 610, 1086
Cfr13I	GGNCC	2 cut(s)	704, 1019
ClaI	ATCGAT	1 cut(s)	1041
Csp6I	GTAC	4 cut(s)	383, 501, 814, 994
CviQI	GTAC	4 cut(s)	383, 501, 814, 994
DdeI	CTNAG	3 cut(s)	12, 111, 471
DpnI	GATC	6 cut(s)	44, 116, 798, 864, 1040, 1071
DpnII	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
DraIII	CACNNNGTG	1 cut(s)	955
DriI	GACNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	2 cut(s)	245, 310
Eam1104I	CTCTTC	1 cut(s)	932
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	932
Eco130I	CCWWGG	5 cut(s)	155, 313, 430, 787, 966
Eco147I	AGGCCT	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	1019
Eco57I	CTGAAG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	769
EcoO109I	RGGNCCY	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	769
EcoRII	CCWGG	2 cut(s)	571, 809
EcoT14I	CCWWGG	5 cut(s)	155, 313, 430, 787, 966
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	5 cut(s)	155, 313, 430, 787, 966
Esp3I	CGTCTC	1 cut(s)	1086
FaqI	GGGAC	1 cut(s)	719
FbaI	TGATCA	1 cut(s)	1069
FblI	GTMKAC	1 cut(s)	1101
Fnu4HI	GCNGC	4 cut(s)	123, 216, 261, 972
FokI	GGATG	1 cut(s)	875
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	4 cut(s)	123, 216, 261, 972
FspBI	CTAG	3 cut(s)	564, 953, 1149
GluI	GCNGC	4 cut(s)	123, 216, 261, 972
GsuI	CTGGAG	2 cut(s)	418, 1110
HaeIII	GGCC	4 cut(s)	247, 312, 705, 849
HapII	CCGG	1 cut(s)	1028
HindIII	AAGCTT	1 cut(s)	1121
HinfI	GANTC	4 cut(s)	151, 402, 452, 516
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	4 cut(s)	410, 763, 776, 941
Hpy166II	GTNNAC	4 cut(s)	253, 561, 1033, 1102
Hpy188I	TCNGA	7 cut(s)	15, 328, 426, 468, 515, 521, 1110
Hpy188III	TCNNGA	4 cut(s)	148, 866, 1001, 1017
Hpy8I	GTNNAC	4 cut(s)	253, 561, 1033, 1102
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	7 cut(s)	140, 347, 605, 652, 731, 818, 859
HpyCH4IV	ACGT	1 cut(s)	1095
HpyCH4V	TGCA	6 cut(s)	203, 367, 374, 493, 542, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 318, 364, 968
HpyF3I	CTNAG	3 cut(s)	12, 111, 471
HpySE526I	ACGT	1 cut(s)	1095
KpnI	GGTACC	1 cut(s)	817
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
LmnI	GCTCC	3 cut(s)	318, 684, 1003
Lsp1109I	GCAGC	4 cut(s)	109, 202, 247, 983
LweI	GCATC	2 cut(s)	218, 790
MaeI	CTAG	3 cut(s)	564, 953, 1149
MaeII	ACGT	1 cut(s)	1095
MaeIII	GTNAC	4 cut(s)	605, 769, 791, 1082
MalI	GATC	6 cut(s)	44, 116, 798, 864, 1040, 1071
MboI	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
MboII	GAAGA	2 cut(s)	169, 919
MflI	RGATCY	2 cut(s)	42, 114
MhlI	GDGCHC	2 cut(s)	91, 286
MlsI	TGGCCA	2 cut(s)	247, 312
MluCI	AATT	2 cut(s)	375, 509
MluNI	TGGCCA	2 cut(s)	247, 312
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	9 cut(s)	102, 105, 153, 474, 692, 728, 839, 860, 942
Mox20I	TGGCCA	2 cut(s)	247, 312
MscI	TGGCCA	2 cut(s)	247, 312
MseI	TTAA	3 cut(s)	36, 102, 1137
MslI	CAYNNNNRTG	4 cut(s)	306, 435, 786, 911
Msp20I	TGGCCA	2 cut(s)	247, 312
MspCI	CTTAAG	1 cut(s)	1136
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	2 cut(s)	573, 811
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	573, 811
MwoI	GCNNNNNNNGC	4 cut(s)	215, 318, 364, 968
NcoI	CCATGG	4 cut(s)	155, 313, 430, 787
NdeII	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
NlaIV	GGNNCC	5 cut(s)	44, 271, 462, 815, 1005
NmuCI	GTSAC	3 cut(s)	605, 769, 1082
NspI	RCATGY	1 cut(s)	440
OliI	CACNNNNGTG	1 cut(s)	911
PceI	AGGCCT	1 cut(s)	849
PciI	ACATGT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	151, 402, 516
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	124, 217, 262, 973
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PscI	ACATGT	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	571, 809
PspEI	GGTNACC	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	571, 809
PspN4I	GGNNCC	5 cut(s)	44, 271, 462, 815, 1005
PspPI	GGNCC	2 cut(s)	704, 1019
PsuI	RGATCY	2 cut(s)	42, 114
RsaI	GTAC	4 cut(s)	384, 502, 815, 995
RsaNI	GTAC	4 cut(s)	383, 501, 814, 994
RseI	CAYNNNNRTG	4 cut(s)	306, 435, 786, 911
SaqAI	TTAA	3 cut(s)	36, 102, 1137
SatI	GCNGC	4 cut(s)	123, 216, 261, 972
Sau3AI	GATC	6 cut(s)	42, 114, 796, 862, 1038, 1069
Sau96I	GGNCC	2 cut(s)	704, 1019
ScaI	AGTACT	1 cut(s)	995
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	573, 811
SduI	GDGCHC	2 cut(s)	91, 286
SfaNI	GCATC	2 cut(s)	218, 790
SinI	GGWCC	1 cut(s)	1019
SmiMI	CAYNNNNRTG	4 cut(s)	306, 435, 786, 911
SmlI	CTYRAG	3 cut(s)	264, 719, 1136
SmoI	CTYRAG	3 cut(s)	264, 719, 1136
Sse9I	AATT	2 cut(s)	375, 509
SseBI	AGGCCT	1 cut(s)	849
SspMI	CTAG	3 cut(s)	564, 953, 1149
StuI	AGGCCT	1 cut(s)	849
StyD4I	CCNGG	2 cut(s)	571, 809
StyI	CCWWGG	5 cut(s)	155, 313, 430, 787, 966
TaaI	ACNGT	7 cut(s)	140, 347, 605, 652, 731, 818, 859
TaiI	ACGT	1 cut(s)	1098
TaqI	TCGA	2 cut(s)	334, 1041
TasI	AATT	2 cut(s)	375, 509
TatI	WGTACW	2 cut(s)	500, 993
TfiI	GAWTC	3 cut(s)	151, 402, 516
Tru1I	TTAA	3 cut(s)	36, 102, 1137
Tru9I	TTAA	3 cut(s)	36, 102, 1137
TscAI	CASTG	4 cut(s)	143, 352, 610, 1093
TseFI	GTSAC	3 cut(s)	605, 769, 1082
TseI	GCWGC	4 cut(s)	122, 215, 260, 971
Tsp45I	GTSAC	3 cut(s)	605, 769, 1082
TspDTI	ATGAA	5 cut(s)	41, 81, 510, 639, 739
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	4 cut(s)	143, 352, 610, 1093
Van91I	CCANNNNNTGG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	1136
VpaK11BI	GGWCC	1 cut(s)	1019
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	3 cut(s)	428, 899, 982
XmiI	GTMKAC	1 cut(s)	1101
XspI	CTAG	3 cut(s)	564, 953, 1149
ZrmI	AGTACT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.