Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

55187228 .. 55189205

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAGGTGAGGGTGGTGTGTAGGAAAGTGCGTGATTACATTCGTTATGATCTGAAAGAGATCGCCTTTCCATCGTCGCTGCCGGACCCTCCTCATATCAAGAAGCGCCGCAAGCTCACCTGGCATGAGCGGTTCTTGGTGTTGAAGGAGGCTTCTAGGCTTTATGCTGCCAGTGGGTGCGGGATATTGGTCCTGAACTGCGGCCTAATGATTATAAGAAGGATGAAAATAGTGAGAATGAACCTAGTGGATCAAAGAGCACAACTAATTAAAGACAAAGAACCCTCAACATTAGAGGATCTTGCTGTGGCTGCTAGAGGAGGGATGGAGACATTAAAGCCTGCTCTGCAACGGATCTACATGACAAGAGCTTCTGCATATAGGGATGCTCTTAAAAGTTTTATCCAGGGGTACCAAGAAGGCATTCAGCAGGTAGTGGAGAGAAAGGAAGATTCTAAATCCGAACAGGAAAGTGATATACAAAATAAATCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

165

Amino Acids

19.08

Weight (kDa)

9.81

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	421
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	4 cut(s)	109, 130, 180, 201
AclWI	GGATC	3 cut(s)	258, 306, 362
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	119, 405
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	2 cut(s)	115, 371
AluI	AGCT	2 cut(s)	115, 371
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	3 cut(s)	258, 306, 362
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	79, 167, 311
Asp700I	GAANNNNTTC	1 cut(s)	423
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	85, 190
AsuHPI	GGTGA	2 cut(s)	19, 109
AvaII	GGWCC	2 cut(s)	85, 190
BanI	GGYRCC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	66, 154, 298
BccI	CCATC	2 cut(s)	79, 319
BciT130I	CCWGG	2 cut(s)	121, 407
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	156, 245, 315
BfoI	RGCGCY	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	5 cut(s)	80, 109, 168, 202, 312
BlsI	GCNGC	5 cut(s)	81, 110, 169, 203, 313
Bme1390I	CCNGG	2 cut(s)	121, 407
Bme18I	GGWCC	2 cut(s)	85, 190
BmgT120I	GGNCC	2 cut(s)	85, 190
BmiI	GGNNCC	2 cut(s)	87, 413
BmrFI	CCNGG	2 cut(s)	121, 407
BmsI	GCATC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	121, 407
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	3 cut(s)	228, 330, 391
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	81, 333
BseXI	GCAGC	3 cut(s)	66, 154, 298
BshFI	GGCC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	49, 60, 250, 298, 354
BspACI	CCGC	4 cut(s)	109, 130, 180, 201
BspANI	GGCC	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	87, 413
BspMI	ACCTGC	1 cut(s)	421
BspPI	GGATC	3 cut(s)	258, 306, 362
BspT107I	GGYRCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	5 cut(s)	49, 60, 250, 298, 354
Bst2UI	CCWGG	2 cut(s)	121, 407
BstC8I	GCNNGC	2 cut(s)	113, 342
BstF5I	GGATG	3 cut(s)	228, 330, 391
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	5 cut(s)	52, 63, 253, 301, 357
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	5 cut(s)	49, 60, 250, 298, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 121, 311, 346
BstNI	CCWGG	2 cut(s)	121, 407
BstSCI	CCNGG	2 cut(s)	119, 405
BstV1I	GCAGC	3 cut(s)	66, 154, 298
BstX2I	RGATCY	2 cut(s)	298, 354
BstYI	RGATCY	2 cut(s)	298, 354
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	228, 330, 391
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	113, 342
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	85, 190
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	2 cut(s)	125, 361
CviJI	RGCY	7 cut(s)	115, 152, 160, 204, 311, 340, 371
CviKI_1	RGCY	7 cut(s)	115, 152, 160, 204, 311, 340, 371
CviQI	GTAC	1 cut(s)	412
DpnI	GATC	5 cut(s)	51, 62, 252, 300, 356
DpnII	GATC	5 cut(s)	49, 60, 250, 298, 354
Eco47I	GGWCC	2 cut(s)	85, 190
EcoRII	CCWGG	2 cut(s)	119, 405
FaeI	CATG	2 cut(s)	128, 364
FaiI	YATR	9 cut(s)	48, 96, 126, 165, 215, 362, 379, 381, 479
FatI	CATG	2 cut(s)	124, 360
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	5 cut(s)	80, 109, 168, 202, 312
FokI	GGATG	3 cut(s)	235, 337, 398
Fsp4HI	GCNGC	5 cut(s)	80, 109, 168, 202, 312
FspBI	CTAG	3 cut(s)	156, 245, 315
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	5 cut(s)	80, 109, 168, 202, 312
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	128, 364
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	19, 109
Hpy188I	TCNGA	2 cut(s)	54, 463
Hpy188III	TCNNGA	2 cut(s)	100, 193
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	139, 213, 413
HpyCH4V	TGCA	2 cut(s)	349, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 121, 311, 346
Hsp92II	CATG	2 cut(s)	128, 364
HspAI	GCGC	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	49, 60, 250, 298, 354
Lsp1109I	GCAGC	3 cut(s)	66, 154, 298
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	3 cut(s)	156, 245, 315
MalI	GATC	5 cut(s)	51, 62, 252, 300, 356
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	5 cut(s)	49, 60, 250, 298, 354
MboII	GAAGA	1 cut(s)	461
MflI	RGATCY	2 cut(s)	298, 354
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	8 cut(s)	3, 99, 102, 142, 289, 295, 311, 314
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	3 cut(s)	270, 335, 393
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	121, 407
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	121, 407
MwoI	GCNNNNNNNGC	4 cut(s)	112, 121, 311, 346
NdeII	GATC	5 cut(s)	49, 60, 250, 298, 354
NlaIII	CATG	2 cut(s)	128, 364
NlaIV	GGNNCC	2 cut(s)	87, 413
PctI	GAATGC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	81, 110, 169, 203, 313
PsiI	TTATAA	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	119, 405
PspGI	CCWGG	2 cut(s)	119, 405
PspN4I	GGNNCC	2 cut(s)	87, 413
PspPI	GGNCC	2 cut(s)	85, 190
PsuI	RGATCY	2 cut(s)	298, 354
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	270, 335, 393
SatI	GCNGC	5 cut(s)	80, 109, 168, 202, 312
Sau3AI	GATC	5 cut(s)	49, 60, 250, 298, 354
Sau96I	GGNCC	2 cut(s)	85, 190
ScrFI	CCNGG	2 cut(s)	121, 407
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	6 cut(s)	9, 117, 122, 246, 373, 435
SfaNI	GCATC	1 cut(s)	376
SinI	GGWCC	2 cut(s)	85, 190
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	4 cut(s)	109, 130, 180, 201
SspMI	CTAG	3 cut(s)	156, 245, 315
StyD4I	CCNGG	2 cut(s)	119, 405
TasI	AATT	1 cut(s)	267
TauI	GCSGC	2 cut(s)	111, 204
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	270, 335, 393
Tru9I	TTAA	3 cut(s)	270, 335, 393
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	3 cut(s)	79, 167, 311
TspDTI	ATGAA	3 cut(s)	17, 239, 254
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	85, 190
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	3 cut(s)	156, 245, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.