Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

6157432 .. 6158405

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTGGAAACTCAGCCTCTGAAGCAGCAGAGCAAGCCCATCAATGGCGTCAATGGGATCCATAACCACCACCATGACGAAGCAGATTTCGACCCAAGTGCCCCTCCTCCATTCAAGATTGCTGAGATCCGGGCCGCCATTCCCAAACACTGCTGGGTCAAGAATCCATGGAGGTCTCTTAGCTATGTTTTCAGGGATTTGTTTGCCATTTCTGCAATGGGAGCTGCTGCCATTTACTTGGATAGTTGGTATCTTTGGCCTTTGTACTGGGCTGCTCAGGGAACCATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCAGACAGTAGAATTCTGAACACAGTTGTGGGGCATATATTGCATTCTGCAATTCTTGTACCATATAATGGATGGAGAATCAGCCACCGAACTCACCATCAGAACCATGGACATGTTGAGAATGATGAGTCATGGGTTCCTGTTAGTGCTTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

165

Amino Acids

18.57

Weight (kDa)

6.69

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	14 - 73	1.6e-26	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	83 - 159	2.9e-12	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	291, 404
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	3 cut(s)	52, 65, 121
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	266, 396
AfiI	CCNNNNNNNGG	3 cut(s)	44, 291, 404
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	183, 224, 333
AluI	AGCT	3 cut(s)	183, 224, 333
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	3 cut(s)	52, 65, 121
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	3 cut(s)	132, 257, 322
ApeKI	GCWGC	4 cut(s)	25, 224, 227, 272
ApoI	RAATTY	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	298
BbvI	GCAGC	4 cut(s)	37, 211, 214, 259
BccI	CCATC	3 cut(s)	47, 402, 441
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	180
BisI	GCNGC	5 cut(s)	26, 135, 225, 228, 273
BlsI	GCNGC	5 cut(s)	27, 136, 226, 229, 274
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	3 cut(s)	59, 283, 474
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	277
BmuI	ACTGGG	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	167, 325, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 291, 404
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	167, 325, 442
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	3 cut(s)	44, 291, 404
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	3 cut(s)	26, 114, 290
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	37, 211, 214, 259
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	3 cut(s)	134, 259, 324
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	3 cut(s)	44, 291, 404
BsmAI	GTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	134, 259, 324
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	103, 298
Bsp143I	GATC	2 cut(s)	57, 126
Bsp19I	CCATGG	3 cut(s)	167, 325, 442
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	134, 259, 324
BspCNI	CTCAG	3 cut(s)	25, 115, 289
BspLI	GGNNCC	3 cut(s)	59, 283, 474
BspPI	GGATC	3 cut(s)	52, 65, 121
BspTNI	GGTCTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	167, 325, 442
BssMI	GATC	2 cut(s)	57, 126
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	3 cut(s)	167, 325, 442
Bst4CI	ACNGT	2 cut(s)	344, 361
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	4 cut(s)	12, 123, 179, 276
BstDSI	CCRYGG	3 cut(s)	167, 325, 442
BstF5I	GGATG	1 cut(s)	413
BstKTI	GATC	2 cut(s)	60, 129
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	57, 126
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 34, 212, 221, 330, 376
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	37, 211, 214, 259
BstX2I	RGATCY	2 cut(s)	57, 126
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	2 cut(s)	57, 126
BsuRI	GGCC	3 cut(s)	134, 259, 324
BtgI	CCRYGG	3 cut(s)	167, 325, 442
BtsCI	GGATG	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	265, 395
CviAII	CATG	8 cut(s)	74, 168, 286, 314, 326, 443, 449, 468
CviQI	GTAC	2 cut(s)	265, 395
DdeI	CTNAG	4 cut(s)	12, 123, 179, 276
DpnI	GATC	2 cut(s)	59, 128
DpnII	GATC	2 cut(s)	57, 126
EaeI	YGGCCR	1 cut(s)	322
Eco130I	CCWWGG	3 cut(s)	167, 325, 442
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	348
EcoT14I	CCWWGG	3 cut(s)	167, 325, 442
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	3 cut(s)	167, 325, 442
FaeI	CATG	8 cut(s)	77, 171, 289, 317, 329, 446, 452, 471
FatI	CATG	8 cut(s)	73, 167, 285, 313, 325, 442, 448, 467
Fnu4HI	GCNGC	5 cut(s)	26, 135, 225, 228, 273
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	5 cut(s)	26, 135, 225, 228, 273
GluI	GCNGC	5 cut(s)	26, 135, 225, 228, 273
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	134, 259, 324
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	8 cut(s)	77, 171, 289, 317, 329, 446, 452, 471
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	3 cut(s)	163, 414, 464
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	4 cut(s)	21, 340, 354, 438
Hpy188III	TCNNGA	2 cut(s)	115, 160
HpyCH4III	ACNGT	2 cut(s)	344, 361
HpyCH4V	TGCA	3 cut(s)	215, 379, 386
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 34, 212, 221, 330, 376
HpyF3I	CTNAG	4 cut(s)	12, 123, 179, 276
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	8 cut(s)	77, 171, 289, 317, 329, 446, 452, 471
Kzo9I	GATC	2 cut(s)	57, 126
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	7 cut(s)	139, 143, 178, 253, 263, 277, 489
Lsp1109I	GCAGC	4 cut(s)	37, 211, 214, 259
MalI	GATC	2 cut(s)	59, 128
MboI	GATC	2 cut(s)	57, 126
MflI	RGATCY	2 cut(s)	57, 126
MhlI	GDGCHC	2 cut(s)	103, 298
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	2 cut(s)	348, 387
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	4 cut(s)	27, 114, 117, 165
Mox20I	TGGCCA	1 cut(s)	324
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	1 cut(s)	493
MslI	CAYNNNNRTG	4 cut(s)	72, 318, 362, 447
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	6 cut(s)	22, 34, 212, 221, 330, 376
NciI	CCSGG	1 cut(s)	131
NcoI	CCATGG	3 cut(s)	167, 325, 442
NdeII	GATC	2 cut(s)	57, 126
NlaIII	CATG	8 cut(s)	77, 171, 289, 317, 329, 446, 452, 471
NlaIV	GGNNCC	3 cut(s)	59, 283, 474
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	362
PciI	ACATGT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	163, 414
PflMI	CCANNNNNTGG	2 cut(s)	291, 404
PkrI	GCNGC	5 cut(s)	27, 136, 226, 229, 274
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	59, 283, 474
PspPI	GGNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	57, 126
RsaI	GTAC	2 cut(s)	266, 396
RsaNI	GTAC	2 cut(s)	265, 395
RseI	CAYNNNNRTG	4 cut(s)	72, 318, 362, 447
SaqAI	TTAA	1 cut(s)	493
SatI	GCNGC	5 cut(s)	26, 135, 225, 228, 273
Sau3AI	GATC	2 cut(s)	57, 126
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	103, 298
SetI	ASST	4 cut(s)	176, 185, 226, 335
SmiMI	CAYNNNNRTG	4 cut(s)	72, 318, 362, 447
Sse9I	AATT	2 cut(s)	348, 387
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	167, 325, 442
TaaI	ACNGT	2 cut(s)	344, 361
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	348, 387
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	163, 414
Tru1I	TTAA	1 cut(s)	493
Tru9I	TTAA	1 cut(s)	493
TscAI	CASTG	1 cut(s)	155
TseI	GCWGC	4 cut(s)	25, 224, 227, 272
TspRI	CASTG	1 cut(s)	155
Van91I	CCANNNNNTGG	2 cut(s)	291, 404
XapI	RAATTY	1 cut(s)	348
XceI	RCATGY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	3 cut(s)	214, 405, 440
XmnI	GAANNNNTTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.