Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

76820020 .. 76823777

Gene Structure 3758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG488900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGGGTGTTGAAGCCAAACCCATGAATGGTGTCAATGGGATCCACAACCTCAACAAAGAATACGATGCAGATTTCGACCCAAGTGCTCCTCCTCCCTTCAAGATAGCTGAGATCCGAGCCGCCATTCCCAAACACTGTTGGGTCAAGAATCCATGGAGGTCCTTGAGCTATGTGTGCAGGGACATCATTGTCATATTTGCAATGGCTGCTGCAGCCATTTACTTCAACAATTGGTATGTCTGGCCACTATACTGGGCTGCTCAGGGAACCATGTTCTGGGCTCTATTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCGGACAGTCGCGTGCTCAATAATGTTGTGGGGCATGTTCTGCATTCTGCAATTCTTGTACCTTATAATGGATGGAGAATCAGCCATAGAACTCACCATCAGAACCATGGCCATGTTGAGAATGATGAGTCCTGGGTTCCTCTGACTGAGAAGGTCTATACAAATTTGGATGAGAGTACAAGAAAGTTTAGATTCAGAGTGCCTTACCCCATTTTTGCATACCCATTCTATCTGTGGACTAGAAGTCCAGGAAAGCAAGGTTCACATTTCAACCCTTACAGCGACTTGTTTGCCCCGAATGAGAGGAACGATGTGATAACCTCAACTGTTTGTTGGACTGTGATGCTCGTTTTCATTGTCTGTATGTCCTTTATAGTAGGACCTGTCCAAGTCTTGAAGATCTATGGTGTCCCTTACTGGGTTAGTTCAATTTTCTTCGTGATAACAACAGTACATTCGACAGTTTATTTGCTAATTTTGTATTGCCTTTTACTTGCAGATTTTCATAATGTGGTTGGACATGGTAACATATTTGCATCACCATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

291

Amino Acids

33.4

Weight (kDa)

7.25

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	9 - 71	6.4e-29	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	79 - 257	8.7e-17	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccII	CGCG	1 cut(s)	336
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	37, 50, 109
AcoI	YGGCCR	3 cut(s)	245, 310, 433
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	3 cut(s)	384, 502, 777
AfiI	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
AgsI	TTSAA	6 cut(s)	14, 103, 229, 595, 721, 753
AhdI	GACNNNNNGTC	1 cut(s)	567
AjnI	CCWGG	2 cut(s)	455, 571
AluBI	AGCT	3 cut(s)	110, 171, 321
AluI	AGCT	3 cut(s)	110, 171, 321
Alw21I	GWGCWC	2 cut(s)	91, 342
AlwI	GGATC	3 cut(s)	37, 50, 109
AoxI	GGCC	3 cut(s)	245, 310, 433
ApeKI	GCWGC	4 cut(s)	209, 212, 215, 260
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	162, 704
AsuHPI	GGTGA	2 cut(s)	410, 855
AvaII	GGWCC	2 cut(s)	162, 704
BalI	TGGCCA	3 cut(s)	247, 312, 435
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	91, 342
BbvI	GCAGC	4 cut(s)	196, 199, 227, 247
BccI	CCATC	2 cut(s)	390, 429
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 596, 630
BciT130I	CCWGG	2 cut(s)	457, 573
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	213
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	5 cut(s)	123, 210, 213, 216, 261
BlsI	GCNGC	5 cut(s)	124, 211, 214, 217, 262
Bme1390I	CCNGG	2 cut(s)	457, 573
Bme18I	GGWCC	2 cut(s)	162, 704
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	162, 704
BmiI	GGNNCC	3 cut(s)	44, 271, 462
BmrFI	CCNGG	2 cut(s)	457, 573
BmrI	ACTGGG	2 cut(s)	265, 751
BmsI	GCATC	3 cut(s)	58, 657, 869
BmuI	ACTGGG	2 cut(s)	265, 751
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	5 cut(s)	155, 313, 430, 456, 866
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
Bse1I	ACTGG	2 cut(s)	260, 746
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	457, 573
BseDI	CCNNGG	5 cut(s)	155, 313, 430, 456, 866
BseGI	GGATG	2 cut(s)	401, 499
BseLI	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	102, 278, 462
BseNI	ACTGG	2 cut(s)	260, 746
BseRI	GAGGAG	2 cut(s)	81, 84
BseXI	GCAGC	4 cut(s)	196, 199, 227, 247
BsgI	GTGCAG	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	247, 312, 435
BsiHKAI	GWGCWC	2 cut(s)	91, 342
BslFI	GGGAC	2 cut(s)	197, 719
BslI	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
BsmFI	GGGAC	2 cut(s)	197, 719
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	247, 312, 435
Bsp1286I	GDGCHC	3 cut(s)	91, 286, 342
Bsp143I	GATC	3 cut(s)	42, 114, 723
Bsp19I	CCATGG	4 cut(s)	155, 313, 430, 866
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	3 cut(s)	247, 312, 435
BspCNI	CTCAG	3 cut(s)	103, 277, 463
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	44, 271, 462
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	3 cut(s)	37, 50, 109
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	260, 746
BssECI	CCNNGG	5 cut(s)	155, 313, 430, 456, 866
BssMI	GATC	3 cut(s)	42, 114, 723
BssT1I	CCWWGG	4 cut(s)	155, 313, 430, 866
Bst2UI	CCWGG	2 cut(s)	457, 573
Bst4CI	ACNGT	6 cut(s)	140, 332, 652, 664, 775, 787
BstAPI	GCANNNNNTGC	2 cut(s)	209, 364
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	111, 264, 471
BstDSI	CCRYGG	4 cut(s)	155, 313, 430, 866
BstF5I	GGATG	2 cut(s)	401, 499
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	3 cut(s)	45, 117, 726
BstMBI	GATC	3 cut(s)	42, 114, 723
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 209, 215, 318, 364
BstNI	CCWGG	2 cut(s)	457, 573
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	455, 571
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	196, 199, 227, 247
BstX2I	RGATCY	3 cut(s)	42, 114, 723
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	3 cut(s)	42, 114, 723
BsuRI	GGCC	3 cut(s)	247, 312, 435
BtgI	CCRYGG	4 cut(s)	155, 313, 430, 866
BtsCI	GGATG	2 cut(s)	401, 499
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	162, 704
Csp6I	GTAC	3 cut(s)	383, 501, 776
CviQI	GTAC	3 cut(s)	383, 501, 776
DdeI	CTNAG	3 cut(s)	111, 264, 471
DpnI	GATC	3 cut(s)	44, 116, 725
DpnII	GATC	3 cut(s)	42, 114, 723
DrdI	GACNNNNNNGTC	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	3 cut(s)	245, 310, 433
Eam1105I	GACNNNNNGTC	1 cut(s)	567
Eco130I	CCWWGG	4 cut(s)	155, 313, 430, 866
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	162, 704
EcoO109I	RGGNCCY	2 cut(s)	162, 704
EcoRII	CCWGG	2 cut(s)	455, 571
EcoT14I	CCWWGG	4 cut(s)	155, 313, 430, 866
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	4 cut(s)	155, 313, 430, 866
FaqI	GGGAC	2 cut(s)	197, 719
Fnu4HI	GCNGC	5 cut(s)	123, 210, 213, 216, 261
FokI	GGATG	2 cut(s)	408, 506
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	5 cut(s)	123, 210, 213, 216, 261
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	5 cut(s)	123, 210, 213, 216, 261
HaeIII	GGCC	3 cut(s)	247, 312, 435
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	4 cut(s)	151, 402, 452, 516
HphI	GGTGA	2 cut(s)	410, 855
Hpy166II	GTNNAC	2 cut(s)	561, 587
Hpy188I	TCNGA	5 cut(s)	119, 328, 426, 468, 521
Hpy188III	TCNNGA	4 cut(s)	103, 148, 718, 763
Hpy8I	GTNNAC	2 cut(s)	561, 587
HpyAV	CCTTC	2 cut(s)	109, 469
HpyCH4III	ACNGT	6 cut(s)	140, 332, 652, 664, 775, 787
HpyCH4V	TGCA	9 cut(s)	71, 180, 203, 215, 367, 374, 542, 821, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 209, 215, 318, 364
HpyF3I	CTNAG	3 cut(s)	111, 264, 471
Kzo9I	GATC	3 cut(s)	42, 114, 723
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	4 cut(s)	196, 199, 227, 247
LweI	GCATC	3 cut(s)	58, 657, 869
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	3 cut(s)	44, 116, 725
MboI	GATC	3 cut(s)	42, 114, 723
MboII	GAAGA	2 cut(s)	733, 751
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	3 cut(s)	42, 114, 723
MhlI	GDGCHC	3 cut(s)	91, 286, 342
MlsI	TGGCCA	3 cut(s)	247, 312, 435
MluCI	AATT	5 cut(s)	232, 375, 487, 753, 798
MluNI	TGGCCA	3 cut(s)	247, 312, 435
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	638, 820
MnlI	CCTC	7 cut(s)	62, 102, 105, 153, 474, 621, 655
Mox20I	TGGCCA	3 cut(s)	247, 312, 435
MroXI	GAANNNNTTC	1 cut(s)	322
MscI	TGGCCA	3 cut(s)	247, 312, 435
MslI	CAYNNNNRTG	4 cut(s)	306, 435, 865, 871
Msp20I	TGGCCA	3 cut(s)	247, 312, 435
MspR9I	CCNGG	2 cut(s)	457, 573
MunI	CAATTG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	457, 573
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	5 cut(s)	177, 209, 215, 318, 364
NcoI	CCATGG	4 cut(s)	155, 313, 430, 866
NdeII	GATC	3 cut(s)	42, 114, 723
NlaIV	GGNNCC	3 cut(s)	44, 271, 462
NspI	RCATGY	1 cut(s)	362
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	151, 402, 516
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	124, 211, 214, 217, 262
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	2 cut(s)	162, 704
PsiI	TTATAA	1 cut(s)	390
Psp5II	RGGWCCY	2 cut(s)	162, 704
Psp6I	CCWGG	2 cut(s)	455, 571
PspGI	CCWGG	2 cut(s)	455, 571
PspN4I	GGNNCC	3 cut(s)	44, 271, 462
PspPI	GGNCC	2 cut(s)	162, 704
PspPPI	RGGWCCY	2 cut(s)	162, 704
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	42, 114, 723
RsaI	GTAC	3 cut(s)	384, 502, 777
RsaNI	GTAC	3 cut(s)	383, 501, 776
RseI	CAYNNNNRTG	4 cut(s)	306, 435, 865, 871
SatI	GCNGC	5 cut(s)	123, 210, 213, 216, 261
Sau3AI	GATC	3 cut(s)	42, 114, 723
Sau96I	GGNCC	2 cut(s)	162, 704
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	457, 573
SduI	GDGCHC	3 cut(s)	91, 286, 342
SfaNI	GCATC	3 cut(s)	58, 657, 869
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	162, 704
SmiMI	CAYNNNNRTG	4 cut(s)	306, 435, 865, 871
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	5 cut(s)	232, 375, 487, 753, 798
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	455, 571
StyI	CCWWGG	4 cut(s)	155, 313, 430, 866
TaaI	ACNGT	6 cut(s)	140, 332, 652, 664, 775, 787
TaqI	TCGA	2 cut(s)	78, 782
TasI	AATT	5 cut(s)	232, 375, 487, 753, 798
TatI	WGTACW	2 cut(s)	500, 775
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	151, 402, 516
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	4 cut(s)	209, 212, 215, 260
TspDTI	ATGAA	3 cut(s)	41, 667, 818
TspRI	CASTG	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	162, 704
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	2 cut(s)	428, 555
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.