Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

55159836 .. 55167167

Gene Structure 7332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATACTCTCAGCCTACTCATCCCCCACTCTCTTCGCCTCAATTCAAACCCCTAACCCCCACCCAACTCTCCACTCCTCCTTCCATGGCGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCATGTCTCTCGCCGCCGCCGCCCCCAAGACCCTCACCGTCGTCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGCACTTCAACCGTCGAAGGCGTCGCCACCTTGACCCAAGAAGATGACGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTGCACCTGGGCCTCATGGGTTCCACTTGCATGAGTTTGGTGACACGACAAATGGATGCATTTCCACAGGACCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCTGATGGAGTGGCAGAGGCAACAATCATGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTGTGGTTGGTCTGACTCCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

222

Amino Acids

22.55

Weight (kDa)

6.02

Isoelectric Point (pI)

24.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	83 - 217	3.1e-49	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	524
AciI	CCGC	6 cut(s)	17, 171, 174, 177, 204, 446
AcoI	YGGCCR	1 cut(s)	18
AcyI	GRCGYC	2 cut(s)	126, 255
AdeI	CACNNNGTG	1 cut(s)	37
AfiI	CCNNNNNNNGG	3 cut(s)	445, 524, 586
AgsI	TTSAA	3 cut(s)	83, 243, 397
AjnI	CCWGG	2 cut(s)	322, 453
AluBI	AGCT	2 cut(s)	139, 422
AluI	AGCT	2 cut(s)	139, 422
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	2 cut(s)	133, 168
AoxI	GGCC	3 cut(s)	18, 216, 326
ApeKI	GCWGC	2 cut(s)	8, 26
AspS9I	GGNCC	4 cut(s)	284, 326, 386, 527
AsuHPI	GGTGA	3 cut(s)	184, 368, 461
AvaII	GGWCC	3 cut(s)	284, 386, 527
AxyI	CCTNAGG	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	20, 38
BccI	CCATC	2 cut(s)	152, 473
BceAI	ACGGC	2 cut(s)	203, 209
BciT130I	CCWGG	2 cut(s)	324, 455
BcoDI	GTCTC	2 cut(s)	133, 168
BfuAI	ACCTGC	1 cut(s)	614
BisI	GCNGC	7 cut(s)	9, 18, 27, 171, 174, 177, 204
BlsI	GCNGC	7 cut(s)	10, 19, 28, 172, 175, 178, 205
Bme1390I	CCNGG	2 cut(s)	324, 455
Bme18I	GGWCC	3 cut(s)	284, 386, 527
BmgT120I	GGNCC	4 cut(s)	284, 326, 386, 527
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	2 cut(s)	324, 455
BmsI	GCATC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	3 cut(s)	119, 215, 590
BsaHI	GRCGYC	2 cut(s)	126, 255
BsaJI	CCNNGG	6 cut(s)	21, 121, 323, 454, 552, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 524, 586
Bse1I	ACTGG	5 cut(s)	18, 316, 529, 619, 662
Bse21I	CCTNAGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	324, 455
BseDI	CCNNGG	6 cut(s)	21, 121, 323, 454, 552, 580
BseGI	GGATG	4 cut(s)	56, 377, 436, 580
BseLI	CCNNNNNNNGG	3 cut(s)	445, 524, 586
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	2 cut(s)	60, 417
BseNI	ACTGG	5 cut(s)	18, 316, 529, 619, 662
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	20, 38
BshFI	GGCC	3 cut(s)	20, 218, 328
BsiHKAI	GWGCWC	1 cut(s)	424
BslI	CCNNNNNNNGG	3 cut(s)	445, 524, 586
BsmAI	GTCTC	2 cut(s)	133, 168
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	20, 218, 328
Bsp1286I	GDGCHC	2 cut(s)	239, 424
Bsp19I	CCATGG	2 cut(s)	21, 121
BspACI	CCGC	6 cut(s)	17, 171, 174, 177, 204, 446
BspANI	GGCC	3 cut(s)	20, 218, 328
BspCNI	CTCAG	2 cut(s)	59, 418
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	614
BspQI	GCTCTTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	5 cut(s)	18, 316, 529, 619, 662
BssECI	CCNNGG	6 cut(s)	21, 121, 323, 454, 552, 580
BssNI	GRCGYC	2 cut(s)	126, 255
BssT1I	CCWWGG	4 cut(s)	21, 121, 552, 580
Bst2UI	CCWGG	2 cut(s)	324, 455
Bst4CI	ACNGT	4 cut(s)	196, 247, 284, 295
Bst6I	CTCTTC	2 cut(s)	74, 541
BstACI	GRCGYC	2 cut(s)	126, 255
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	46, 426, 602, 608
BstDSI	CCRYGG	2 cut(s)	21, 121
BstEII	GGTNACC	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	4 cut(s)	56, 377, 436, 580
BstMAI	GTCTC	2 cut(s)	133, 168
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 176
BstNI	CCWGG	2 cut(s)	324, 455
BstNSI	RCATGY	1 cut(s)	642
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	322, 453
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	20, 38
Bsu36I	CCTNAGG	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	20, 218, 328
BtgI	CCRYGG	2 cut(s)	21, 121
BtsCI	GGATG	4 cut(s)	56, 377, 436, 580
BtsIMutI	CAGTG	3 cut(s)	11, 612, 669
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	4 cut(s)	284, 326, 386, 527
CseI	GACGC	2 cut(s)	115, 244
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviJI	RGCY	9 cut(s)	20, 29, 50, 139, 218, 328, 422, 510, 551
CviKI_1	RGCY	9 cut(s)	20, 29, 50, 139, 218, 328, 422, 510, 551
DdeI	CTNAG	4 cut(s)	46, 426, 602, 608
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	74, 541
EarI	CTCTTC	2 cut(s)	74, 541
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	4 cut(s)	21, 121, 552, 580
Eco24I	GRGCYC	1 cut(s)	424
Eco47I	GGWCC	3 cut(s)	284, 386, 527
Eco53kI	GAGCTC	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	322, 453
EcoT14I	CCWWGG	4 cut(s)	21, 121, 552, 580
EcoT22I	ATGCAT	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	4 cut(s)	21, 121, 552, 580
Esp3I	CGTCTC	1 cut(s)	133
FauI	CCCGC	1 cut(s)	439
Fnu4HI	GCNGC	7 cut(s)	9, 18, 27, 171, 174, 177, 204
FokI	GGATG	4 cut(s)	43, 384, 443, 587
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	9, 18, 27, 171, 174, 177, 204
GluI	GCNGC	7 cut(s)	9, 18, 27, 171, 174, 177, 204
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	20, 218, 328
HgaI	GACGC	2 cut(s)	115, 244
Hin1I	GRCGYC	2 cut(s)	126, 255
HinfI	GANTC	2 cut(s)	412, 658
HphI	GGTGA	3 cut(s)	184, 368, 461
Hpy166II	GTNNAC	2 cut(s)	593, 629
Hpy188I	TCNGA	1 cut(s)	657
Hpy188III	TCNNGA	2 cut(s)	425, 563
Hpy8I	GTNNAC	2 cut(s)	593, 629
Hpy99I	CGWCG	5 cut(s)	200, 203, 224, 251, 260
HpyAV	CCTTC	3 cut(s)	127, 208, 245
HpyCH4III	ACNGT	4 cut(s)	196, 247, 284, 295
HpyCH4V	TGCA	5 cut(s)	4, 320, 346, 375, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 176
HpyF3I	CTNAG	4 cut(s)	46, 426, 602, 608
Hsp92I	GRCGYC	2 cut(s)	126, 255
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	3 cut(s)	144, 419, 427
Lsp1109I	GCAGC	2 cut(s)	20, 38
LweI	GCATC	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	356, 449
MboII	GAAGA	3 cut(s)	61, 287, 558
MhlI	GDGCHC	2 cut(s)	239, 424
MluCI	AATT	3 cut(s)	78, 465, 540
MlyI	GAGTC	2 cut(s)	406, 652
MnlI	CCTC	7 cut(s)	85, 124, 200, 339, 421, 484, 565
Mph1103I	ATGCAT	1 cut(s)	377
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	2 cut(s)	345, 447
MspR9I	CCNGG	2 cut(s)	324, 455
MvaI	CCWGG	2 cut(s)	324, 455
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 176
NcoI	CCATGG	2 cut(s)	21, 121
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	356, 449
NsiI	ATGCAT	1 cut(s)	377
NspI	RCATGY	1 cut(s)	642
PagI	TCATGA	1 cut(s)	562
PaqCI	CACCTGC	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	541
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	7 cut(s)	10, 19, 28, 172, 175, 178, 205
PleI	GAGTC	2 cut(s)	406, 652
PpsI	GAGTC	2 cut(s)	406, 652
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	322, 453
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	322, 453
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	4 cut(s)	284, 326, 386, 527
RseI	CAYNNNNRTG	2 cut(s)	345, 447
SacI	GAGCTC	1 cut(s)	424
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	7 cut(s)	9, 18, 27, 171, 174, 177, 204
Sau96I	GGNCC	4 cut(s)	284, 326, 386, 527
SchI	GAGTC	2 cut(s)	406, 652
ScrFI	CCNGG	2 cut(s)	324, 455
SduI	GDGCHC	2 cut(s)	239, 424
SetI	ASST	7 cut(s)	141, 266, 325, 424, 456, 582, 628
SfaNI	GCATC	1 cut(s)	362
SinI	GGWCC	3 cut(s)	284, 386, 527
SmiMI	CAYNNNNRTG	2 cut(s)	345, 447
SmlI	CTYRAG	3 cut(s)	134, 230, 569
SmoI	CTYRAG	3 cut(s)	134, 230, 569
Sse9I	AATT	3 cut(s)	78, 465, 540
SsiI	CCGC	6 cut(s)	17, 171, 174, 177, 204, 446
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	322, 453
StyI	CCWWGG	4 cut(s)	21, 121, 552, 580
TaaI	ACNGT	4 cut(s)	196, 247, 284, 295
TaqI	TCGA	1 cut(s)	249
TasI	AATT	3 cut(s)	78, 465, 540
TauI	GCSGC	5 cut(s)	20, 173, 176, 179, 206
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	3 cut(s)	18, 619, 669
TseFI	GTSAC	2 cut(s)	356, 449
TseI	GCWGC	2 cut(s)	8, 26
Tsp45I	GTSAC	2 cut(s)	356, 449
TspDTI	ATGAA	4 cut(s)	447, 551, 579, 612
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	3 cut(s)	18, 619, 669
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	284, 386, 527
XagI	CCTNNNNNAGG	1 cut(s)	584
XceI	RCATGY	1 cut(s)	642
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.