Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

55118401 .. 55119718

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAAGGGCAAGAAGAGCTGGTTGCTGTGAGTGATCATCAGCAAACCCAGATGGTCATCAAGGGCAAGAGGACCAAGCGCCAGAGGCCCATGTCTCCTTTCGGTCTGGCAGTGACTTCGAGCTCGTCGAGCGCTTGTGGCGGCGCTCATGGTGGAGAAGAGTATGGGAACTCCTTCACTTCAGCCAGTTATGACAGCACTGAGGAGGAAGAGGACATGGCCAACTGCCTGATTCTGTTGGCTCAGGGTTGCCATGTGGTTCCCAAGCAACAGACTAGCAGTACTCTTCATGATGAAGCTACCGCTGTTTCTAGTCATGTGGGCAAAGCTGGGTTTTATGTCTATGAGTGCAAGACCTGCAACCGGACCTTCCCTTCTTTTCAAGCACTCGGTGGCCACCGAGCCAGTCACAAAAAGCCAAAGTCCTCCACCGCGGCGATGGCCGATCAGGAGAAGAAACCGGCAGCGACCCATTTCACCTCTGCATCCATGGATCAAGAAGTTGAAGATTCTAAGCAATTTATCAAGAAGAGTAGTCCTCCTCCAACCCATCCTACAGTTCCTATTCAGATAAAGGGGTTTCAGAGCAACAACAACAAGGCTAAGATTCATGAGTGTTCGATATGCGGGTCGGAGTTCACATCGGGTCAAGCTCTTGGTGGGCATATGAGACGGCACAGAGCAGCAGTAGCCAACAACAACACTACTACTAGTACTACTCAGGTGGTGGGTATTGGTGCAGCCATTGATAACAGTATGAGGAGCAAGCAGGAGAGAAGTATTCTAGCACTGGATCTAAATCTTCCAGCACCAGAAGACCATGATCATCATCACCACCATCACCAACAGCATCAGATTCATCACCAGCGTGACTCCAAGTTCCAATTTGTGCCGACCCAACAGACTAGTCTTGTCTTCAACGCTCCTGCTTTGGTGGATTGTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

316

Amino Acids

34.51

Weight (kDa)

7.1

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	114 - 140	6e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	204 - 228	5.4e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	365
AccII	CGCG	1 cut(s)	434
AciI	CCGC	5 cut(s)	141, 303, 432, 434, 627
AclWI	GGATC	2 cut(s)	501, 801
AcoI	YGGCCR	3 cut(s)	219, 394, 441
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	283, 715
AfeI	AGCGCT	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	383, 506, 919
AhlI	ACTAGT	2 cut(s)	710, 905
AleI	CACNNNNGTG	1 cut(s)	867
AluBI	AGCT	5 cut(s)	19, 123, 299, 329, 653
AluI	AGCT	5 cut(s)	19, 123, 299, 329, 653
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	99, 664
AlwI	GGATC	2 cut(s)	501, 801
Aor51HI	AGCGCT	1 cut(s)	133
AoxI	GGCC	4 cut(s)	86, 219, 394, 441
ApeKI	GCWGC	3 cut(s)	464, 683, 740
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	81, 134, 146
AspS9I	GGNCC	3 cut(s)	72, 87, 366
AsuHPI	GGTGA	4 cut(s)	469, 824, 833, 854
AvaII	GGWCC	2 cut(s)	72, 366
BalI	TGGCCA	2 cut(s)	221, 396
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	822, 907
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	476, 695, 752
BccI	CCATC	4 cut(s)	46, 433, 558, 846
BceAI	ACGGC	1 cut(s)	689
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BclI	TGATCA	2 cut(s)	34, 823
BcoDI	GTCTC	2 cut(s)	99, 664
BcuI	ACTAGT	2 cut(s)	710, 905
BfaI	CTAG	5 cut(s)	276, 312, 711, 785, 906
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	3 cut(s)	82, 135, 147
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	5 cut(s)	142, 435, 465, 684, 741
BlsI	GCNGC	5 cut(s)	143, 436, 466, 685, 742
BmcAI	AGTACT	2 cut(s)	283, 715
Bme18I	GGWCC	2 cut(s)	72, 366
BmgT120I	GGNCC	3 cut(s)	72, 87, 366
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	2 cut(s)	494, 859
BpiI	GAAGAC	2 cut(s)	822, 907
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu10I	CCTNAGC	1 cut(s)	243
BsaBI	GATNNNNATC	3 cut(s)	56, 798, 828
BsaJI	CCNNGG	2 cut(s)	432, 489
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	3 cut(s)	186, 405, 795
Bse8I	GATNNNNATC	3 cut(s)	56, 798, 828
BseDI	CCNNGG	2 cut(s)	432, 489
BseGI	GGATG	2 cut(s)	485, 550
BseJI	GATNNNNATC	3 cut(s)	56, 798, 828
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	192, 257, 734
BseNI	ACTGG	3 cut(s)	186, 405, 795
BseRI	GAGGAG	3 cut(s)	218, 531, 775
BseXI	GCAGC	3 cut(s)	476, 695, 752
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	4 cut(s)	88, 221, 396, 443
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	364, 461
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	99, 664
BsmBI	CGTCTC	1 cut(s)	664
BsnI	GGCC	4 cut(s)	88, 221, 396, 443
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	34, 445, 493, 793, 823
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	5 cut(s)	141, 303, 432, 434, 627
BspANI	GGCC	4 cut(s)	88, 221, 396, 443
BspCNI	CTCAG	3 cut(s)	193, 256, 733
BspFNI	CGCG	1 cut(s)	434
BspHI	TCATGA	2 cut(s)	289, 610
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	501, 801
BspQI	GCTCTTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	186, 405, 795
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	432, 489
BssMI	GATC	5 cut(s)	34, 445, 493, 793, 823
BssT1I	CCWWGG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	559, 755
Bst6I	CTCTTC	5 cut(s)	9, 153, 204, 291, 524
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	5 cut(s)	201, 243, 513, 603, 720
BstDSI	CCRYGG	2 cut(s)	432, 489
BstF5I	GGATG	2 cut(s)	485, 550
BstFNI	CGCG	1 cut(s)	434
BstH2I	RGCGCY	3 cut(s)	82, 135, 147
BstHHI	GCGC	3 cut(s)	81, 134, 146
BstKTI	GATC	5 cut(s)	37, 448, 496, 796, 826
BstMAI	GTCTC	2 cut(s)	99, 664
BstMBI	GATC	5 cut(s)	34, 445, 493, 793, 823
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 85, 129, 138, 357, 440, 689
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	476, 695, 752
BstV2I	GAAGAC	2 cut(s)	822, 907
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BsuRI	GGCC	4 cut(s)	88, 221, 396, 443
BtgI	CCRYGG	2 cut(s)	432, 489
BtgZI	GCGATG	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	485, 550
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	117, 198, 788
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	767
CciI	TCATGA	2 cut(s)	289, 610
CfoI	GCGC	3 cut(s)	81, 134, 146
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	72, 87, 366
Cfr42I	CCGCGG	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	282, 714
CviAII	CATG	9 cut(s)	91, 149, 217, 254, 290, 317, 490, 611, 821
CviQI	GTAC	2 cut(s)	282, 714
DdeI	CTNAG	5 cut(s)	201, 243, 513, 603, 720
DpnI	GATC	5 cut(s)	36, 447, 495, 795, 825
DpnII	GATC	5 cut(s)	34, 445, 493, 793, 823
DraIII	CACNNNGTG	1 cut(s)	392
EaeI	YGGCCR	3 cut(s)	219, 394, 441
Eam1104I	CTCTTC	5 cut(s)	9, 153, 204, 291, 524
EarI	CTCTTC	5 cut(s)	9, 153, 204, 291, 524
Ecl136II	GAGCTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	72, 366
Eco47III	AGCGCT	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	664
FaeI	CATG	9 cut(s)	94, 152, 220, 257, 293, 320, 493, 614, 824
FatI	CATG	9 cut(s)	90, 148, 216, 253, 289, 316, 489, 610, 820
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	666
FbaI	TGATCA	2 cut(s)	34, 823
Fnu4HI	GCNGC	5 cut(s)	142, 435, 465, 684, 741
FokI	GGATG	2 cut(s)	472, 537
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	5 cut(s)	142, 435, 465, 684, 741
FspBI	CTAG	5 cut(s)	276, 312, 711, 785, 906
GlaI	GCGC	3 cut(s)	80, 133, 145
GluI	GCNGC	5 cut(s)	142, 435, 465, 684, 741
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	3 cut(s)	82, 135, 147
HaeIII	GGCC	4 cut(s)	88, 221, 396, 443
HapII	CCGG	2 cut(s)	364, 461
HhaI	GCGC	3 cut(s)	81, 134, 146
Hin1II	CATG	9 cut(s)	94, 152, 220, 257, 293, 320, 493, 614, 824
Hin6I	GCGC	3 cut(s)	79, 132, 144
HinP1I	GCGC	3 cut(s)	79, 132, 144
HinfI	GANTC	5 cut(s)	232, 509, 607, 856, 872
HpaII	CCGG	2 cut(s)	364, 461
HphI	GGTGA	4 cut(s)	469, 824, 833, 854
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	4 cut(s)	570, 585, 634, 855
Hpy188III	TCNNGA	5 cut(s)	290, 449, 497, 526, 611
Hpy8I	GTNNAC	1 cut(s)	639
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	184, 379, 384
HpyCH4III	ACNGT	2 cut(s)	559, 755
HpyCH4V	TGCA	4 cut(s)	351, 360, 485, 740
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 85, 129, 138, 357, 440, 689
HpyF3I	CTNAG	5 cut(s)	201, 243, 513, 603, 720
Hsp92II	CATG	9 cut(s)	94, 152, 220, 257, 293, 320, 493, 614, 824
HspAI	GCGC	3 cut(s)	79, 132, 144
Ksp22I	TGATCA	2 cut(s)	34, 823
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	5 cut(s)	34, 445, 493, 793, 823
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	762, 928
Lsp1109I	GCAGC	3 cut(s)	476, 695, 752
LweI	GCATC	2 cut(s)	494, 859
MaeI	CTAG	5 cut(s)	276, 312, 711, 785, 906
MaeIII	GTNAC	3 cut(s)	112, 407, 869
MalI	GATC	5 cut(s)	36, 447, 495, 795, 825
MboI	GATC	5 cut(s)	34, 445, 493, 793, 823
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	2 cut(s)	221, 396
MluCI	AATT	2 cut(s)	518, 884
MluNI	TGGCCA	2 cut(s)	221, 396
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	2 cut(s)	569, 612
Mox20I	TGGCCA	2 cut(s)	221, 396
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	2 cut(s)	221, 396
MseI	TTAA	1 cut(s)	949
MslI	CAYNNNNRTG	1 cut(s)	867
Msp20I	TGGCCA	2 cut(s)	221, 396
MspA1I	CMGCKG	2 cut(s)	305, 434
MspI	CCGG	2 cut(s)	364, 461
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	7 cut(s)	16, 85, 129, 138, 357, 440, 689
NcoI	CCATGG	1 cut(s)	489
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	5 cut(s)	34, 445, 493, 793, 823
NlaIII	CATG	9 cut(s)	94, 152, 220, 257, 293, 320, 493, 614, 824
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	3 cut(s)	112, 407, 869
OliI	CACNNNNGTG	1 cut(s)	867
PagI	TCATGA	2 cut(s)	289, 610
PciSI	GCTCTTC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	4 cut(s)	232, 509, 607, 856
PkrI	GCNGC	5 cut(s)	143, 436, 466, 685, 742
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	72, 87, 366
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	2 cut(s)	283, 715
RsaNI	GTAC	2 cut(s)	282, 714
RseI	CAYNNNNRTG	1 cut(s)	867
SacI	GAGCTC	1 cut(s)	125
SacII	CCGCGG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	949
SatI	GCNGC	5 cut(s)	142, 435, 465, 684, 741
Sau3AI	GATC	5 cut(s)	34, 445, 493, 793, 823
Sau96I	GGNCC	3 cut(s)	72, 87, 366
ScaI	AGTACT	2 cut(s)	283, 715
SchI	GAGTC	1 cut(s)	866
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	9 cut(s)	21, 125, 301, 331, 359, 371, 482, 655, 726
SfaNI	GCATC	2 cut(s)	494, 859
SfcI	CTRYAG	1 cut(s)	555
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	2 cut(s)	72, 366
SmiMI	CAYNNNNRTG	1 cut(s)	867
SpeI	ACTAGT	2 cut(s)	710, 905
Sse9I	AATT	2 cut(s)	518, 884
SsiI	CCGC	5 cut(s)	141, 303, 432, 434, 627
SspMI	CTAG	5 cut(s)	276, 312, 711, 785, 906
SstI	GAGCTC	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	559, 755
TaqI	TCGA	3 cut(s)	119, 128, 620
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	518, 884
TatI	WGTACW	2 cut(s)	281, 713
TauI	GCSGC	2 cut(s)	144, 437
TfiI	GAWTC	4 cut(s)	232, 509, 607, 856
Tru1I	TTAA	1 cut(s)	949
Tru9I	TTAA	1 cut(s)	949
TscAI	CASTG	3 cut(s)	117, 205, 795
TseFI	GTSAC	3 cut(s)	112, 407, 869
TseI	GCWGC	3 cut(s)	464, 683, 740
Tsp45I	GTSAC	3 cut(s)	112, 407, 869
TspDTI	ATGAA	4 cut(s)	278, 309, 599, 848
TspRI	CASTG	3 cut(s)	117, 205, 795
VpaK11BI	GGWCC	2 cut(s)	72, 366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	5 cut(s)	276, 312, 711, 785, 906
ZrmI	AGTACT	2 cut(s)	283, 715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.