Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

55180067 .. 55182125

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACAAGGACAAGAGCTGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGAATATAAGGAGAAGCCAAATTATGCACGTTGTGTTGCTATTGTAGCATATGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATGTAAGTCCTGCTGTCCTCCTTTTTCTGTTAATTTGGAGATGTCTAGTGGTGCTGTGGCAGTAGATTTGACCAAAGTGGGAGACCCATTCAAAGACACAGCTGGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGCTGGTCATGGCTCCTGTCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

137

Amino Acids

14.94

Weight (kDa)

8.98

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	18 - 59	4.2e-09	Inorganic H+ pyrophosphatase
H_PPase	PF03030	105 - 132	5.1e-08	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	131
AccIII	TCCGGA	2 cut(s)	174, 193
AcoI	YGGCCR	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	18, 341
AluI	AGCT	2 cut(s)	18, 341
Alw26I	GTCTC	2 cut(s)	230, 315
Aor13HI	TCCGGA	2 cut(s)	174, 193
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	35, 223
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	22, 210
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	230, 315
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	36, 224
BlsI	GCNGC	2 cut(s)	37, 225
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	133, 399
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	174, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseAI	TCCGGA	2 cut(s)	174, 193
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	22, 210
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	175, 194
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	230, 315
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	315
Bsp13I	TCCGGA	2 cut(s)	174, 193
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	42
BspEI	TCCGGA	2 cut(s)	174, 193
BspLI	GGNNCC	2 cut(s)	133, 399
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	33, 40, 375
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	230, 315
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	22, 210
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	33, 40, 375
Cfr13I	GGNCC	1 cut(s)	344
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	240, 356, 394
CviJI	RGCY	7 cut(s)	18, 42, 67, 140, 223, 341, 398
CviKI_1	RGCY	7 cut(s)	18, 42, 67, 140, 223, 341, 398
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	83
DrdI	GACNNNNNNGTC	1 cut(s)	244
DseDI	GACNNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	243, 359, 397
FaiI	YATR	9 cut(s)	57, 75, 100, 102, 155, 218, 241, 357, 395
FatI	CATG	3 cut(s)	239, 355, 393
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	36, 224
Fsp4HI	GCNGC	2 cut(s)	36, 224
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	36, 224
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	175, 194
Hin1II	CATG	3 cut(s)	243, 359, 397
HpaII	CCGG	2 cut(s)	175, 194
HphI	GGTGA	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	2 cut(s)	175, 194
HpyAV	CCTTC	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	77, 104, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	243, 359, 397
Kpn2I	TCCGGA	2 cut(s)	174, 193
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	9 cut(s)	24, 114, 141, 188, 207, 218, 262, 327, 374
Lsp1109I	GCAGC	2 cut(s)	22, 210
LweI	GCATC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	79
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MluCI	AATT	3 cut(s)	70, 227, 271
MnlI	CCTC	3 cut(s)	105, 190, 267
Mph1103I	ATGCAT	1 cut(s)	106
MroI	TCCGGA	2 cut(s)	174, 193
MseI	TTAA	2 cut(s)	270, 366
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	175, 194
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	243, 359, 397
NlaIV	GGNNCC	2 cut(s)	133, 399
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	1 cut(s)	243
PciI	ACATGT	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	37, 225
PscI	ACATGT	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	133, 399
PspPI	GGNCC	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	270, 366
SatI	GCNGC	2 cut(s)	36, 224
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	6 cut(s)	20, 82, 130, 154, 343, 349
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	3 cut(s)	70, 227, 271
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	82
TasI	AATT	3 cut(s)	70, 227, 271
Tru1I	TTAA	2 cut(s)	270, 366
Tru9I	TTAA	2 cut(s)	270, 366
TseI	GCWGC	2 cut(s)	35, 223
TspDTI	ATGAA	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	344
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.