Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Forward (+)

3947958 .. 3951358

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGACTAGTGTGACCAGAGGCCAAGCTGATTTTGACCCAAGTGCTCCTCCACCATTTAAGATTGCTGAGATCAGGGATGCAATTCCCAAACATTGTTGGGTTAAAAATCCATGGAGGTCTTTGAGTTATGCTGTTAGGGATATTTTTGTCATTTTGGCACTGGCAGCCATAGCCAAATACTCAAGCACTTGGTATGTTTGGCCATTCTATTGGGCTGCCCAAGGCACCATGTTTTGGGCTGTATTTGTTATTGGACATGATTGTGGCCATGGAAGCTTCTCAGACTCTCGCTGGCTCAATAGTTTTGTGGGGCATATTTTGCATTCTGCAATTCTTGTTCCTTTTCATGGCTGGAGAATCAGCCATAAAACACACCATCAGAACCATGGACATGTTGAGAATGATGAGTCTTGGGTTCCAATGACAGAGTCTTTGTACAAAAGCTTGCCTAGCAGCACCAAAACGCTGAGATTCACAGTGCCTTTTCCATTCTTTTCTTTCCCTCTCTATCTGTGGTATAGAACTCCTGGTAAAGAAGGCACTCACTTCCATCCTAGCAGCGACCTGTTCTCTCCTAATGAAAGAAGTTATGTTATAACATCAACTGTTTGTTGGATTATTATGGCTGCTTTGCTTTTCCATTTGTCCATTGTGTTTGGTCCTATCCAAATGCTCAAATTATACTTTGTTCCTTATTGGATTTTTGTTATGTGGTTGGACATTGTCACATACTTGCATCACCATGGTTATGAGACGAAACTCCCTTGGTACCGTGGCGAGGAATGGAGTTACCTAAGAGGCGGACTTACAACTATTGATCGCGATTACGGATGGTTTAATAAAATTCACCATGATATTGGGACCCATGTTACACATCACCTATTCCCTCAAATCCCACACTATCACCTAGTAGAAGCAACAAATGCAGCTAAGCATGTTCTTGGGAAATATTATCGCGAGCCAGAAAAATCAGGCCCAATTCCATTTCACTTGGCGAAGATTTTAACTGCAAGTATGAAAGAGGATCACTATGTTAGTGACACAGGAGATATTGTGTATTATCAGACTGATTCAAAGCGTCTTACATTTTATGAGAAGATGAAATCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

372

Amino Acids

43.33

Weight (kDa)

8.26

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc65I	GGTACC	1 cut(s)	771
AccB1I	GGYRCC	2 cut(s)	227, 771
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccII	CGCG	2 cut(s)	825, 960
AciI	CCGC	1 cut(s)	804
AclWI	GGATC	1 cut(s)	1035
AcoI	YGGCCR	2 cut(s)	203, 268
AcsI	RAATTY	1 cut(s)	846
AfaI	GTAC	2 cut(s)	440, 773
AfiI	CCNNNNNNNGG	3 cut(s)	237, 350, 781
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	1077
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	29, 279, 447, 932
AluI	AGCT	4 cut(s)	29, 279, 447, 932
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	1 cut(s)	1035
AoxI	GGCC	4 cut(s)	22, 203, 268, 976
ApeKI	GCWGC	6 cut(s)	167, 218, 456, 561, 629, 929
ApoI	RAATTY	1 cut(s)	846
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
Asp718I	GGTACC	1 cut(s)	771
AspS9I	GGNCC	3 cut(s)	662, 864, 977
AsuHPI	GGTGA	4 cut(s)	734, 842, 872, 899
AvaII	GGWCC	2 cut(s)	662, 864
BalI	TGGCCA	2 cut(s)	205, 270
BanI	GGYRCC	2 cut(s)	227, 771
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	6 cut(s)	179, 205, 468, 573, 616, 941
BccI	CCATC	3 cut(s)	387, 561, 828
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	749
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	4 cut(s)	9, 453, 558, 911
BisI	GCNGC	6 cut(s)	168, 219, 457, 562, 630, 930
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	6 cut(s)	169, 220, 458, 563, 631, 931
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	662, 864
BmgT120I	GGNCC	3 cut(s)	662, 864, 977
BmiI	GGNNCC	5 cut(s)	229, 420, 773, 865, 866
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	2 cut(s)	70, 748
BpmI	CTGGAG	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	169
BsaJI	CCNNGG	7 cut(s)	113, 223, 271, 388, 745, 767, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	1041, 1071
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 350, 781
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	7 cut(s)	113, 223, 271, 388, 745, 767, 775
BseGI	GGATG	3 cut(s)	85, 553, 839
BseLI	CCNNNNNNNGG	3 cut(s)	237, 350, 781
BseMII	CTCAG	3 cut(s)	60, 297, 461
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	6 cut(s)	179, 205, 468, 573, 616, 941
Bsh1236I	CGCG	2 cut(s)	825, 960
BshFI	GGCC	4 cut(s)	24, 205, 270, 978
BshNI	GGYRCC	2 cut(s)	227, 771
BsiHKAI	GWGCWC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	3 cut(s)	237, 350, 781
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	4 cut(s)	24, 205, 270, 978
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	72, 820, 1027
Bsp1720I	GCTNAGC	1 cut(s)	933
Bsp19I	CCATGG	4 cut(s)	113, 271, 388, 745
Bsp68I	TCGCGA	2 cut(s)	825, 960
BspACI	CCGC	1 cut(s)	804
BspANI	GGCC	4 cut(s)	24, 205, 270, 978
BspCNI	CTCAG	3 cut(s)	61, 296, 462
BspFNI	CGCG	2 cut(s)	825, 960
BspLI	GGNNCC	5 cut(s)	229, 420, 773, 865, 866
BspPI	GGATC	1 cut(s)	1035
BspT107I	GGYRCC	2 cut(s)	227, 771
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	7 cut(s)	113, 223, 271, 388, 745, 767, 775
BssMI	GATC	3 cut(s)	72, 820, 1027
BssT1I	CCWWGG	6 cut(s)	113, 223, 271, 388, 745, 767
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	481, 610, 776
BstAPI	GCANNNNNTGC	2 cut(s)	322, 926
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	296, 449, 962
BstDEI	CTNAG	5 cut(s)	69, 283, 470, 797, 933
BstDSI	CCRYGG	5 cut(s)	113, 271, 388, 745, 775
BstF5I	GGATG	3 cut(s)	85, 553, 839
BstFNI	CGCG	2 cut(s)	825, 960
BstKTI	GATC	3 cut(s)	75, 823, 1030
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	3 cut(s)	72, 820, 1027
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 173, 276, 322, 453, 926
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	2 cut(s)	398, 941
BstSCI	CCNGG	1 cut(s)	529
BstUI	CGCG	2 cut(s)	825, 960
BstV1I	GCAGC	6 cut(s)	179, 205, 468, 573, 616, 941
BstXI	CCANNNNNNTGG	2 cut(s)	213, 860
BsuRI	GGCC	4 cut(s)	24, 205, 270, 978
BtgI	CCRYGG	5 cut(s)	113, 271, 388, 745, 775
BtsCI	GGATG	3 cut(s)	85, 553, 839
BtsIMutI	CAGTG	2 cut(s)	161, 486
BtuMI	TCGCGA	2 cut(s)	825, 960
Cac8I	GCNNGC	3 cut(s)	296, 449, 962
Cfr13I	GGNCC	3 cut(s)	662, 864, 977
CseI	GACGC	1 cut(s)	1070
Csp6I	GTAC	2 cut(s)	439, 772
CviQI	GTAC	2 cut(s)	439, 772
DdeI	CTNAG	5 cut(s)	69, 283, 470, 797, 933
DpnI	GATC	3 cut(s)	74, 822, 1029
DpnII	GATC	3 cut(s)	72, 820, 1027
EaeI	YGGCCR	2 cut(s)	203, 268
EciI	GGCGGA	1 cut(s)	819
Eco130I	CCWWGG	6 cut(s)	113, 223, 271, 388, 745, 767
Eco47I	GGWCC	2 cut(s)	662, 864
EcoO109I	RGGNCCY	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	6 cut(s)	113, 223, 271, 388, 745, 767
ErhI	CCWWGG	6 cut(s)	113, 223, 271, 388, 745, 767
Esp3I	CGTCTC	1 cut(s)	749
FaqI	GGGAC	1 cut(s)	877
Fnu4HI	GCNGC	6 cut(s)	168, 219, 457, 562, 630, 930
FokI	GGATG	3 cut(s)	92, 540, 846
Fsp4HI	GCNGC	6 cut(s)	168, 219, 457, 562, 630, 930
FspBI	CTAG	4 cut(s)	9, 453, 558, 911
GluI	GCNGC	6 cut(s)	168, 219, 457, 562, 630, 930
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	24, 205, 270, 978
HgaI	GACGC	1 cut(s)	1070
HindIII	AAGCTT	2 cut(s)	277, 445
HinfI	GANTC	6 cut(s)	287, 360, 410, 431, 474, 1073
HphI	GGTGA	4 cut(s)	734, 842, 872, 899
Hpy188I	TCNGA	3 cut(s)	286, 384, 1068
Hpy188III	TCNNGA	2 cut(s)	824, 959
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	3 cut(s)	481, 610, 776
HpyCH4V	TGCA	6 cut(s)	83, 325, 332, 739, 929, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 173, 276, 322, 453, 926
HpyF3I	CTNAG	5 cut(s)	69, 283, 470, 797, 933
KflI	GGGWCCC	1 cut(s)	864
KpnI	GGTACC	1 cut(s)	775
Kzo9I	GATC	3 cut(s)	72, 820, 1027
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	6 cut(s)	179, 205, 468, 573, 616, 941
LweI	GCATC	2 cut(s)	70, 748
MaeI	CTAG	4 cut(s)	9, 453, 558, 911
MaeIII	GTNAC	5 cut(s)	13, 727, 791, 871, 1040
MalI	GATC	3 cut(s)	74, 822, 1029
MboI	GATC	3 cut(s)	72, 820, 1027
MboII	GAAGA	2 cut(s)	1012, 1111
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	2 cut(s)	205, 270
MluCI	AATT	5 cut(s)	84, 333, 680, 846, 981
MluNI	TGGCCA	2 cut(s)	205, 270
MlyI	GAGTC	3 cut(s)	281, 419, 440
MmeI	TCCRAC	2 cut(s)	596, 699
MnlI	CCTC	8 cut(s)	14, 60, 111, 516, 775, 794, 900, 1018
Mox20I	TGGCCA	2 cut(s)	205, 270
MscI	TGGCCA	2 cut(s)	205, 270
MseI	TTAA	4 cut(s)	60, 105, 840, 1007
MslI	CAYNNNNRTG	4 cut(s)	264, 393, 744, 750
Msp20I	TGGCCA	2 cut(s)	205, 270
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	2 cut(s)	825, 960
MwoI	GCNNNNNNNGC	6 cut(s)	167, 173, 276, 322, 453, 926
NcoI	CCATGG	4 cut(s)	113, 271, 388, 745
NdeII	GATC	3 cut(s)	72, 820, 1027
NlaIV	GGNNCC	5 cut(s)	229, 420, 773, 865, 866
NmuCI	GTSAC	3 cut(s)	13, 727, 1040
NruI	TCGCGA	2 cut(s)	825, 960
NspI	RCATGY	2 cut(s)	398, 941
PciI	ACATGT	1 cut(s)	394
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	360, 474, 1073
PflFI	GACNNNGTC	2 cut(s)	430, 725
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	6 cut(s)	169, 220, 458, 563, 631, 931
PleI	GAGTC	3 cut(s)	281, 418, 439
PpsI	GAGTC	3 cut(s)	281, 418, 439
PpuMI	RGGWCCY	1 cut(s)	864
PscI	ACATGT	1 cut(s)	394
PsiI	TTATAA	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	5 cut(s)	229, 420, 773, 865, 866
PspPI	GGNCC	3 cut(s)	662, 864, 977
PspPPI	RGGWCCY	1 cut(s)	864
PsyI	GACNNNGTC	2 cut(s)	430, 725
RruI	TCGCGA	2 cut(s)	825, 960
RsaI	GTAC	2 cut(s)	440, 773
RsaNI	GTAC	2 cut(s)	439, 772
RseI	CAYNNNNRTG	4 cut(s)	264, 393, 744, 750
SaqAI	TTAA	4 cut(s)	60, 105, 840, 1007
SatI	GCNGC	6 cut(s)	168, 219, 457, 562, 630, 930
Sau3AI	GATC	3 cut(s)	72, 820, 1027
Sau96I	GGNCC	3 cut(s)	662, 864, 977
SchI	GAGTC	3 cut(s)	281, 419, 440
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	9 cut(s)	31, 122, 281, 449, 570, 798, 885, 912, 934
SfaNI	GCATC	2 cut(s)	70, 748
SinI	GGWCC	2 cut(s)	662, 864
SmiMI	CAYNNNNRTG	4 cut(s)	264, 393, 744, 750
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	5 cut(s)	84, 333, 680, 846, 981
SsiI	CCGC	1 cut(s)	804
SspI	AATATT	1 cut(s)	953
SspMI	CTAG	4 cut(s)	9, 453, 558, 911
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	6 cut(s)	113, 223, 271, 388, 745, 767
TaaI	ACNGT	3 cut(s)	481, 610, 776
TasI	AATT	5 cut(s)	84, 333, 680, 846, 981
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	3 cut(s)	360, 474, 1073
Tru1I	TTAA	4 cut(s)	60, 105, 840, 1007
Tru9I	TTAA	4 cut(s)	60, 105, 840, 1007
TscAI	CASTG	2 cut(s)	168, 486
TseFI	GTSAC	3 cut(s)	13, 727, 1040
TseI	GCWGC	6 cut(s)	167, 218, 456, 561, 629, 929
Tsp45I	GTSAC	3 cut(s)	13, 727, 1040
TspDTI	ATGAA	3 cut(s)	338, 597, 1034
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	2 cut(s)	168, 486
Tth111I	GACNNNGTC	2 cut(s)	430, 725
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	662, 864
XapI	RAATTY	1 cut(s)	846
XceI	RCATGY	2 cut(s)	398, 941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XspI	CTAG	4 cut(s)	9, 453, 558, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.