Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

78605444 .. 78608384

Gene Structure 2941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG458200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGGGTGTTGAAGCCAAACCCATGAATGGTGTCAATGGGATCCACAACCTCAACAAAGAAGACGATGCAGATTTCGACCCAAGTGCTCCTCCTCCCTTCAAGATAGCTGAGATCCGAGCCGCCATTCCCAAACACTGTTGGGTCAAGAACCCATGGAGGTCCTTGAGCTATGTGTGCAGGGACATCATTGTCATATTTGCAATGGCTGCTGCAGCCATTTACTTCAACAATTGGTATGTCTGGCCGCTATACTGGGCTGCTCAGGGAACCATGTTCTGGGCTCTATTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCGGACAGTCGCGTGCTCAATAATGTTGTGGGGCATGTTCTGCATTCTGCAATTCTTGTACCTTATAATGGATGGAGAATCAGCCATAGAACTCACCATCAGAACCATGGCCATGTTGAGAATGATGAGTCCTGGGTTCCTCTGACTGAGAAGGTCTATACAAGTTTGGATGAAAGTACAAGAAAGTTTAGATTCAGAGTGCCTTACCCCATTTTTGCATACCCATTCTATCTGTGGACTAGAAGTCCAGGAAAGCAAGGTTCACATTTCAACCCTTACAGCGACTTGTTTGCCCCGAATGAGAGGAACGATGTGATAACCTCAACTGTTTGTTGGACTGTGATGCTCGTTTTCATCGTCTGTATGTCCTTTATAGTAGGACCTGTCCAAGTCTTGAAGATCTATGGTGTCCCTTACTGGGTTAGTTCAATTTTCTTCGTGATAACAACAGTACATTCGACAGTTTATTTCCTAATTTTGTATTGGCTTTTACTTGCAGATTTTCATAATGTGGTTGGACATGGTAACATATTTGCATCACCATGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

291

Amino Acids

33.44

Weight (kDa)

6.94

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	9 - 71	2.7e-29	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	79 - 257	1.6e-16	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	123, 248
AclWI	GGATC	3 cut(s)	37, 50, 109
AcoI	YGGCCR	3 cut(s)	245, 310, 433
AfaI	GTAC	3 cut(s)	384, 502, 777
AfiI	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
AgsI	TTSAA	6 cut(s)	14, 103, 229, 595, 721, 753
AhdI	GACNNNNNGTC	1 cut(s)	567
AjnI	CCWGG	2 cut(s)	455, 571
AluBI	AGCT	3 cut(s)	110, 171, 321
AluI	AGCT	3 cut(s)	110, 171, 321
Alw21I	GWGCWC	2 cut(s)	91, 342
AlwI	GGATC	3 cut(s)	37, 50, 109
AoxI	GGCC	3 cut(s)	245, 310, 433
ApeKI	GCWGC	4 cut(s)	209, 212, 215, 260
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	162, 704
AsuHPI	GGTGA	2 cut(s)	410, 855
AvaII	GGWCC	2 cut(s)	162, 704
BalI	TGGCCA	2 cut(s)	312, 435
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	91, 342
BbvI	GCAGC	4 cut(s)	196, 199, 227, 247
BccI	CCATC	2 cut(s)	390, 429
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 596, 630
BciT130I	CCWGG	2 cut(s)	457, 573
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	213
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	6 cut(s)	123, 210, 213, 216, 248, 261
BlsI	GCNGC	6 cut(s)	124, 211, 214, 217, 249, 262
Bme1390I	CCNGG	2 cut(s)	457, 573
Bme18I	GGWCC	2 cut(s)	162, 704
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	162, 704
BmiI	GGNNCC	3 cut(s)	44, 271, 462
BmrFI	CCNGG	2 cut(s)	457, 573
BmrI	ACTGGG	2 cut(s)	265, 751
BmsI	GCATC	3 cut(s)	58, 657, 869
BmuI	ACTGGG	2 cut(s)	265, 751
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	5 cut(s)	155, 313, 430, 456, 866
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
Bse1I	ACTGG	2 cut(s)	260, 746
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	457, 573
BseDI	CCNNGG	5 cut(s)	155, 313, 430, 456, 866
BseGI	GGATG	2 cut(s)	401, 499
BseLI	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	102, 278, 462
BseNI	ACTGG	2 cut(s)	260, 746
BseRI	GAGGAG	2 cut(s)	81, 84
BseXI	GCAGC	4 cut(s)	196, 199, 227, 247
BsgI	GTGCAG	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	247, 312, 435
BsiHKAI	GWGCWC	2 cut(s)	91, 342
BslFI	GGGAC	2 cut(s)	197, 719
BslI	CCNNNNNNNGG	4 cut(s)	29, 279, 392, 742
BsmFI	GGGAC	2 cut(s)	197, 719
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	247, 312, 435
Bsp1286I	GDGCHC	3 cut(s)	91, 286, 342
Bsp143I	GATC	3 cut(s)	42, 114, 723
Bsp19I	CCATGG	4 cut(s)	155, 313, 430, 866
BspACI	CCGC	2 cut(s)	123, 248
BspANI	GGCC	3 cut(s)	247, 312, 435
BspCNI	CTCAG	3 cut(s)	103, 277, 463
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	44, 271, 462
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	3 cut(s)	37, 50, 109
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	260, 746
BssECI	CCNNGG	5 cut(s)	155, 313, 430, 456, 866
BssMI	GATC	3 cut(s)	42, 114, 723
BssT1I	CCWWGG	4 cut(s)	155, 313, 430, 866
Bst2UI	CCWGG	2 cut(s)	457, 573
Bst4CI	ACNGT	6 cut(s)	140, 332, 652, 664, 775, 787
BstAPI	GCANNNNNTGC	2 cut(s)	209, 364
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	111, 264, 471
BstDSI	CCRYGG	4 cut(s)	155, 313, 430, 866
BstF5I	GGATG	2 cut(s)	401, 499
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	3 cut(s)	45, 117, 726
BstMBI	GATC	3 cut(s)	42, 114, 723
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 209, 215, 318, 364
BstNI	CCWGG	2 cut(s)	457, 573
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	455, 571
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	196, 199, 227, 247
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	3 cut(s)	42, 114, 723
BstYI	RGATCY	3 cut(s)	42, 114, 723
BsuRI	GGCC	3 cut(s)	247, 312, 435
BtgI	CCRYGG	4 cut(s)	155, 313, 430, 866
BtsCI	GGATG	2 cut(s)	401, 499
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	162, 704
Csp6I	GTAC	3 cut(s)	383, 501, 776
CviQI	GTAC	3 cut(s)	383, 501, 776
DdeI	CTNAG	3 cut(s)	111, 264, 471
DpnI	GATC	3 cut(s)	44, 116, 725
DpnII	GATC	3 cut(s)	42, 114, 723
DrdI	GACNNNNNNGTC	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	3 cut(s)	245, 310, 433
Eam1105I	GACNNNNNGTC	1 cut(s)	567
Eco130I	CCWWGG	4 cut(s)	155, 313, 430, 866
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	162, 704
EcoO109I	RGGNCCY	2 cut(s)	162, 704
EcoRII	CCWGG	2 cut(s)	455, 571
EcoT14I	CCWWGG	4 cut(s)	155, 313, 430, 866
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	4 cut(s)	155, 313, 430, 866
FaqI	GGGAC	2 cut(s)	197, 719
Fnu4HI	GCNGC	6 cut(s)	123, 210, 213, 216, 248, 261
FokI	GGATG	2 cut(s)	408, 506
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	6 cut(s)	123, 210, 213, 216, 248, 261
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	6 cut(s)	123, 210, 213, 216, 248, 261
HaeIII	GGCC	3 cut(s)	247, 312, 435
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	3 cut(s)	402, 452, 516
HphI	GGTGA	2 cut(s)	410, 855
Hpy166II	GTNNAC	2 cut(s)	561, 587
Hpy188I	TCNGA	5 cut(s)	119, 328, 426, 468, 521
Hpy188III	TCNNGA	4 cut(s)	103, 148, 718, 763
Hpy8I	GTNNAC	2 cut(s)	561, 587
HpyAV	CCTTC	2 cut(s)	109, 469
HpyCH4III	ACNGT	6 cut(s)	140, 332, 652, 664, 775, 787
HpyCH4V	TGCA	9 cut(s)	71, 180, 203, 215, 367, 374, 542, 821, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 209, 215, 318, 364
HpyF3I	CTNAG	3 cut(s)	111, 264, 471
Kzo9I	GATC	3 cut(s)	42, 114, 723
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	4 cut(s)	196, 199, 227, 247
LweI	GCATC	3 cut(s)	58, 657, 869
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	3 cut(s)	44, 116, 725
MboI	GATC	3 cut(s)	42, 114, 723
MboII	GAAGA	3 cut(s)	74, 733, 751
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	3 cut(s)	42, 114, 723
MhlI	GDGCHC	3 cut(s)	91, 286, 342
MlsI	TGGCCA	2 cut(s)	312, 435
MluCI	AATT	4 cut(s)	232, 375, 753, 798
MluNI	TGGCCA	2 cut(s)	312, 435
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	638, 820
MnlI	CCTC	7 cut(s)	62, 102, 105, 153, 474, 621, 655
Mox20I	TGGCCA	2 cut(s)	312, 435
MroXI	GAANNNNTTC	1 cut(s)	322
MscI	TGGCCA	2 cut(s)	312, 435
MslI	CAYNNNNRTG	4 cut(s)	306, 435, 865, 871
Msp20I	TGGCCA	2 cut(s)	312, 435
MspR9I	CCNGG	2 cut(s)	457, 573
MunI	CAATTG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	457, 573
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	5 cut(s)	177, 209, 215, 318, 364
NcoI	CCATGG	4 cut(s)	155, 313, 430, 866
NdeII	GATC	3 cut(s)	42, 114, 723
NlaIV	GGNNCC	3 cut(s)	44, 271, 462
NspI	RCATGY	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	678
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	402, 516
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	6 cut(s)	124, 211, 214, 217, 249, 262
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	2 cut(s)	162, 704
PsiI	TTATAA	1 cut(s)	390
Psp5II	RGGWCCY	2 cut(s)	162, 704
Psp6I	CCWGG	2 cut(s)	455, 571
PspGI	CCWGG	2 cut(s)	455, 571
PspN4I	GGNNCC	3 cut(s)	44, 271, 462
PspPI	GGNCC	2 cut(s)	162, 704
PspPPI	RGGWCCY	2 cut(s)	162, 704
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	42, 114, 723
RsaI	GTAC	3 cut(s)	384, 502, 777
RsaNI	GTAC	3 cut(s)	383, 501, 776
RseI	CAYNNNNRTG	4 cut(s)	306, 435, 865, 871
SatI	GCNGC	6 cut(s)	123, 210, 213, 216, 248, 261
Sau3AI	GATC	3 cut(s)	42, 114, 723
Sau96I	GGNCC	2 cut(s)	162, 704
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	457, 573
SduI	GDGCHC	3 cut(s)	91, 286, 342
SfaNI	GCATC	3 cut(s)	58, 657, 869
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	162, 704
SmiMI	CAYNNNNRTG	4 cut(s)	306, 435, 865, 871
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	232, 375, 753, 798
SsiI	CCGC	2 cut(s)	123, 248
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	455, 571
StyI	CCWWGG	4 cut(s)	155, 313, 430, 866
TaaI	ACNGT	6 cut(s)	140, 332, 652, 664, 775, 787
TaqI	TCGA	2 cut(s)	78, 782
TasI	AATT	4 cut(s)	232, 375, 753, 798
TatI	WGTACW	2 cut(s)	500, 775
TauI	GCSGC	2 cut(s)	125, 250
TfiI	GAWTC	2 cut(s)	402, 516
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	4 cut(s)	209, 212, 215, 260
TspDTI	ATGAA	4 cut(s)	41, 510, 667, 818
TspRI	CASTG	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	279
VpaK11BI	GGWCC	2 cut(s)	162, 704
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	2 cut(s)	428, 555
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.