Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003511

Physical Location & Seq

Genomic Coordinates Reverse (-)

55194470 .. 55195686

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTTTGCAGTTTTGCTTCTTGAATCAGCCAGTACATATGAGCTTGTTGAGATTAGCACTGGTGGAAAATTGAGCAGGCACAATCTCCATGTTCAGCAACTGGGACCTGACACAATCACCGAGTTTTGTCTGCCGGGGATAACACAAGATCTACGTAGTAGCACAGTCCTTGACCATCCACGAGGTTATTCCAGGCAACTTCATAGGTGCATTGTGTCTCATTCTGAAGGGAAAGTCGTCTTTGATGGGAACGTAAAGGTCAACAGATATGCACAACAGACAGATGGTGGGCAACTAACAAGAAGTCTTCTTCTTGCACCCCGTGCCACTGTAAATGTTATATCAAATCTTCAGATCATTGCTGATGATGTCAAGTGTTCCCATGGAGCTGCAATTAGTGACCTAGAAGAAACCCAGTTTAGAGGCAGCAAGAAGGGCTCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:0080167 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

149

Amino Acids

16.23

Weight (kDa)

7.0

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	8 - 140	2.3e-29	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29980 AT2G29980
fragaria_vesca	FvH4_3g38780 FvH4_3g38780
malus_domestica	MD03G1067900.v1.1 MD03G1068000.v1.1 MD11G1072300.v1.1 MD11G1072600.v1.1
prunus_persica	Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G055900_v2.0.a1 Prupe.6G056100_v2.0.a1
pyrus_communis	pycom03g05440 pycom11g06020 pycom11g06030
rosa_chinensis	RchiOBHm_Chr5g0069961
rosa_laevigata	RLG00000036110
rosa_multiflora	Rmu_sc0002367.1_g000013
rosa_roxburghii	Rroxscaffold_1G00011100
rosa_rugosa	Rorug05G0401000 Rorug05G0401100 Rorug05G0401200 Rorug05G0401300 Rorug05G0401400 Rorug05G0401500.1 Rorug05G0401600
rosa_samantha	Rh5AG458200 Rh5BG476900 Rh5CG500700 Rh5DG488900
rosa_wichuraiana	Rw5G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	249, 338
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	46, 392
AluI	AGCT	2 cut(s)	46, 392
Alw26I	GTCTC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	392, 429
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	379, 441
BccI	CCATC	3 cut(s)	186, 242, 281
BciT130I	CCWGG	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	407
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	393, 430
BlsI	GCNGC	2 cut(s)	394, 431
Bme1390I	CCNGG	2 cut(s)	138, 196
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	138, 196
BmrI	ACTGGG	2 cut(s)	113, 412
BmuI	ACTGGG	2 cut(s)	113, 412
BpiI	GAAGAC	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	137, 385
Bse1I	ACTGG	4 cut(s)	33, 67, 108, 418
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	137, 385
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	4 cut(s)	33, 67, 108, 418
BseXI	GCAGC	2 cut(s)	379, 441
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	151, 357
Bsp19I	CCATGG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	4 cut(s)	33, 67, 108, 418
BssECI	CCNNGG	2 cut(s)	137, 385
BssMI	GATC	2 cut(s)	151, 357
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	169, 334
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	154, 360
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	151, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 438
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	136, 194
BstSNI	TACGTA	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	379, 441
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	60, 330
Cac8I	GCNNGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	92, 386
CviJI	RGCY	5 cut(s)	5, 32, 46, 392, 441
CviKI_1	RGCY	5 cut(s)	5, 32, 46, 392, 441
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	2 cut(s)	153, 359
DpnII	GATC	2 cut(s)	151, 357
DraIII	CACNNNGTG	1 cut(s)	326
Eco105I	TACGTA	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	107
Eco57I	CTGAAG	2 cut(s)	249, 338
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	2 cut(s)	95, 389
FaiI	YATR	7 cut(s)	40, 42, 93, 207, 273, 344, 387
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	2 cut(s)	91, 385
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	393, 430
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	393, 430
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	2 cut(s)	393, 430
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	2 cut(s)	95, 389
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	229, 357
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	224, 430
HpyCH4III	ACNGT	2 cut(s)	169, 334
HpyCH4IV	ACGT	2 cut(s)	157, 255
HpyCH4V	TGCA	5 cut(s)	11, 213, 275, 320, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 438
HpySE526I	ACGT	2 cut(s)	157, 255
Hsp92II	CATG	2 cut(s)	95, 389
Kzo9I	GATC	2 cut(s)	151, 357
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	9 cut(s)	46, 48, 64, 89, 123, 150, 181, 208, 431
Lsp1109I	GCAGC	2 cut(s)	379, 441
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	157, 255
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	153, 359
MboI	GATC	2 cut(s)	151, 357
MboII	GAAGA	4 cut(s)	302, 305, 344, 422
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	2 cut(s)	71, 396
MnlI	CCTC	2 cut(s)	179, 419
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	138, 196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	326, 438
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	385
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	2 cut(s)	151, 357
NlaIII	CATG	2 cut(s)	95, 389
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	394, 431
Ppu21I	YACGTR	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	107
PspPPI	RGGWCCY	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	393, 430
Sau3AI	GATC	2 cut(s)	151, 357
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	138, 196
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	9 cut(s)	48, 112, 160, 190, 212, 258, 264, 394, 408
SinI	GGWCC	1 cut(s)	107
SnaBI	TACGTA	1 cut(s)	158
Sse9I	AATT	2 cut(s)	71, 396
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	136, 194
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	169, 334
TaiI	ACGT	2 cut(s)	160, 258
TasI	AATT	2 cut(s)	71, 396
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	2 cut(s)	67, 337
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	392, 429
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	67, 337
VpaK11BI	GGWCC	1 cut(s)	107
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.