Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

12934149 .. 12935784

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAAATGGTTCTCTGTATCTATGGTTTCCCCACCAATGTCTCTGCCCTTCAGGTCCTTTTGCTACCCTAAAGCAAAAGATTCCTTGCCAAAAGATTCTGTTTTTACTTCTTTTGTTCTCCAGTTGTGGCCTCGCTCTTGAATGTTTTGCTAACGTAAAAAAAACCTTTTTGCAGTTTGAATGGGCTTGGCAGCATCCGAGAGAATCGGTTGCAGTTAGAGAAGCTGCTGCGGCTTTCAAATCCTTCTCTGGGGTTGCTAGTAAGATCAAGCTTGTATATACAATGTTAAATCTTCCAGCTTGGAATAGTTTGAACCTCACGGTTAATTATTTCTCGTCAAAGTATGCACACCACGGTGGTAAATCTCCAAGTTTACCTTTACATATGAAAGTTCAAGTTTGTGCTATGGAGGATCTTCAGTATTTCACAAAGGTAGATGACAGTTCTCAACCCGAAGATGAAGAGAGTCCCGAGGTTAATGAAGAGGATGATGATGATGATGATGATGATAGTAGCAACCTAAGCCAGCCTGGGAATTCAAATACAAGCTCATCGGATGACCGGCATTTTGAAAAAGCGAAAGAACCTGTAACTGTATTTGATGAAGAAGACAGATTAGCAAATTTCAGTGGTTTTGGCTTATTAGATGAAGAAGAGACTGTTGAAGATGAAGTATCACATATCACTGTTGGATCCATTAGAGCTACTGAGAAAGAACCCGAGACTGTATTCAATGACAGATTAGCAAGTTTCACTTGTTTTGGCTTAGTAGAGATTGTTGAAGATGAAGTATCACATGGAACTATAGGATCCACTGAAGCTATGGAGAAAGAGTGTAGGAAAAGAAGGAACCATATCACCTCAACGACGACTGAGGTTGATGTAGAGGTGATAGATCTGATGACTCCATCACCAAGCTGCAGAGCTGGATCATCTATGAAGAGACGAAGAGTTTCTGAGTTTATAGATTTGACTATGTCTCCTAATTTCATAGAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

334

Amino Acids

37.43

Weight (kDa)

4.69

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY-YIG	PF01541	29 - 101	9.9e-14	GIY-YIG catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	6 cut(s)	423, 690, 703, 807, 820, 940
AcsI	RAATTY	2 cut(s)	538, 625
AcuI	CTGAAG	3 cut(s)	36, 404, 840
AfiI	CCNNNNNNNGG	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	532
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	8 cut(s)	227, 274, 302, 552, 707, 824, 921, 929
AluI	AGCT	8 cut(s)	227, 274, 302, 552, 707, 824, 921, 929
Alw26I	GTCTC	5 cut(s)	47, 653, 719, 940, 987
AlwI	GGATC	6 cut(s)	423, 690, 703, 807, 820, 940
Ama87I	CYCGRG	2 cut(s)	473, 722
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	193, 227, 230, 921
ApoI	RAATTY	2 cut(s)	538, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
Asp700I	GAANNNNTTC	2 cut(s)	10, 955
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	853, 904, 906
AvaI	CYCGRG	2 cut(s)	473, 722
AvaII	GGWCC	1 cut(s)	56
BamHI	GGATCC	2 cut(s)	695, 812
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	205, 214, 217, 908
BccI	CCATC	1 cut(s)	919
BciT130I	CCWGG	1 cut(s)	534
BcoDI	GTCTC	5 cut(s)	47, 653, 719, 940, 987
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	807, 922
BglII	AGATCT	1 cut(s)	898
BisI	GCNGC	5 cut(s)	194, 228, 231, 234, 922
BlsI	GCNGC	5 cut(s)	195, 229, 232, 235, 923
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	473, 722
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	697, 814, 854
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	524
BsaJI	CCNNGG	3 cut(s)	355, 474, 533
BsaXI	ACNNNNNCTCC	4 cut(s)	821, 851, 967, 997
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	564
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	355, 474, 533
BseGI	GGATG	3 cut(s)	196, 496, 565
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	702, 867, 951
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	205, 214, 217, 908
BshFI	GGCC	1 cut(s)	132
BsiHKCI	CYCGRG	2 cut(s)	473, 722
BsiSI	CCGG	1 cut(s)	565
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	5 cut(s)	47, 653, 719, 940, 987
BsmBI	CGTCTC	1 cut(s)	940
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	2 cut(s)	473, 722
Bsp143I	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	703, 868, 952
BspLI	GGNNCC	3 cut(s)	697, 814, 854
BspMAI	CTGCAG	1 cut(s)	926
BspPI	GGATC	6 cut(s)	423, 690, 703, 807, 820, 940
BsrFI	RCCGGY	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	564
BssECI	CCNNGG	3 cut(s)	355, 474, 533
BssMI	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	7 cut(s)	325, 359, 446, 598, 664, 691, 730
Bst6I	CTCTTC	5 cut(s)	459, 480, 651, 938, 946
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	5 cut(s)	524, 711, 769, 876, 960
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	196, 496, 565
BstKTI	GATC	6 cut(s)	270, 418, 698, 815, 901, 935
BstMAI	GTCTC	5 cut(s)	47, 653, 719, 940, 987
BstMBI	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 525
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	2 cut(s)	807, 922
BstV1I	GCAGC	4 cut(s)	205, 214, 217, 908
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	4 cut(s)	415, 695, 812, 898
BstYI	RGATCY	4 cut(s)	415, 695, 812, 898
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	196, 496, 565
BtsIMutI	CAGTG	3 cut(s)	637, 687, 816
Cac8I	GCNNGC	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	1 cut(s)	800
DdeI	CTNAG	5 cut(s)	524, 711, 769, 876, 960
DpnI	GATC	6 cut(s)	269, 417, 697, 814, 900, 934
DpnII	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
Eam1104I	CTCTTC	5 cut(s)	459, 480, 651, 938, 946
EarI	CTCTTC	5 cut(s)	459, 480, 651, 938, 946
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	3 cut(s)	36, 404, 840
Eco88I	CYCGRG	2 cut(s)	473, 722
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	532
Esp3I	CGTCTC	1 cut(s)	940
FaeI	CATG	1 cut(s)	803
FalI	AAGNNNNNCTT	4 cut(s)	364, 396, 742, 774
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	799
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	5 cut(s)	194, 228, 231, 234, 922
FokI	GGATG	3 cut(s)	183, 503, 572
Fsp4HI	GCNGC	5 cut(s)	194, 228, 231, 234, 922
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	5 cut(s)	194, 228, 231, 234, 922
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	565
Hin1II	CATG	1 cut(s)	803
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	6 cut(s)	82, 97, 206, 469, 907, 998
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	3 cut(s)	853, 904, 906
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	4 cut(s)	201, 559, 903, 961
Hpy188III	TCNNGA	2 cut(s)	140, 473
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	874
HpyAV	CCTTC	3 cut(s)	60, 256, 843
HpyCH4III	ACNGT	7 cut(s)	325, 359, 446, 598, 664, 691, 730
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	175, 215, 350, 924
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 525
HpyF3I	CTNAG	5 cut(s)	524, 711, 769, 876, 960
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	803
Kzo9I	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
Lsp1109I	GCAGC	4 cut(s)	205, 214, 217, 908
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	6 cut(s)	269, 417, 697, 814, 900, 934
MboI	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
MflI	RGATCY	4 cut(s)	415, 695, 812, 898
MluCI	AATT	4 cut(s)	328, 538, 625, 988
MlyI	GAGTC	2 cut(s)	478, 901
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	8 cut(s)	143, 329, 406, 469, 481, 871, 874, 883
MroXI	GAANNNNTTC	2 cut(s)	10, 955
MseI	TTAA	3 cut(s)	290, 327, 480
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	233, 525
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
NlaIII	CATG	1 cut(s)	803
NlaIV	GGNNCC	3 cut(s)	697, 814, 854
OliI	CACNNNNGTG	1 cut(s)	357
PdmI	GAANNNNTTC	2 cut(s)	10, 955
PfeI	GAWTC	3 cut(s)	82, 97, 206
PflFI	GACNNNGTC	1 cut(s)	979
PkrI	GCNGC	5 cut(s)	195, 229, 232, 235, 923
PleI	GAGTC	2 cut(s)	477, 901
PpsI	GAGTC	2 cut(s)	477, 901
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	697, 814, 854
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	926
PsuI	RGATCY	4 cut(s)	415, 695, 812, 898
PsyI	GACNNNGTC	1 cut(s)	979
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	290, 327, 480
SatI	GCNGC	5 cut(s)	194, 228, 231, 234, 922
Sau3AI	GATC	6 cut(s)	267, 415, 695, 812, 898, 932
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	478, 901
ScrFI	CCNGG	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	807, 922
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	328, 538, 625, 988
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	532
TaaI	ACNGT	7 cut(s)	325, 359, 446, 598, 664, 691, 730
TaiI	ACGT	1 cut(s)	159
TasI	AATT	4 cut(s)	328, 538, 625, 988
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	82, 97, 206
Tru1I	TTAA	3 cut(s)	290, 327, 480
Tru9I	TTAA	3 cut(s)	290, 327, 480
TscAI	CASTG	3 cut(s)	637, 694, 823
TseI	GCWGC	4 cut(s)	193, 227, 230, 921
TspDTI	ATGAA	9 cut(s)	404, 477, 498, 621, 666, 687, 804, 956, 982
TspRI	CASTG	3 cut(s)	637, 694, 823
Tth111I	GACNNNGTC	1 cut(s)	979
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	538, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmnI	GAANNNNTTC	2 cut(s)	10, 955
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.