Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

3315425 .. 3317483

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAGGCAGAGAAGAAAGATTGGATCAGAAATCCCAGAAACCCTAATCGGGGAGGAGAAAGAATCAGAAGAAGGACGATTCTTCGCCTGCTATCTGTTGAGCTCTCGCAGCCCCCGCTACAAAGGCCACACTTATATTGGATTCACAGTGAACCCACGGCGTCGTATAAGACAGCACAATGGTGAAATAGCTCAAGGTGCTTGGAGAACGAAGCGGAAGCGTCCATGGGAGATGGTCTTGTGCATCTATGGTTTCCCAACTAATGTTTCTGCTCTCCAGTTTGAATGGGCCTGGCAGAACCCAACTGTATCAAAGGCAGTTAGGCAGGCTGCTGCAAGCTTTAAATCCCTGGGAGGGCTTGTCAGCAAGATCAAACTTGCATACACCATGCTCACCCTCCCTCCTTGGCAGAGCTTGAACATCACTGTAAACTTCTTTTCAACCCAGTACACCAAACATTCTGCTGGTTGTCTACGCCTGCCGGAACAGATGAAGGTCAAAGTCTGCTCCATGGATGAGCTTCCTTCCTGTACCAAAATATCTGATGACCTTTTTGAAAATGAAGATGAGTGGTGTAATGAAAGGGAATTTGATGAACATATGAATACCAGTACACTACACAAAGAAACAATGTCGGACCACATGGCTCATAATTCAACAGATGATCAGCAGAGTGATAGTGGCAAAAGAATTAATGAAGTATGCAGTAAAGAAGTAGGAGAAGATGAGTGGTATAATGGAAGAGAATGTGATGAAGCTGTGAATGATGGTACGTTACAGGAAGAAACATTATCAGATCTTATAGTTCAAAGTTCAGCAGATGATCAGCAGGATAATACTGGCAAGACAATTAACAAAGCATATCGATGCAGTCAAGAAGTAGGAGAGGATTGTACAGAGCAATTTGGTTTTATCGCATCGCCAATGAGAATGCCATCTTCAAATGTCACTACCTCATTTGACACAGAAGTAACTAAGGATACAGGATCTGCTGATGCCATTAGTGTTAAATTGGGCCGACCTGCAATGGAACAATTGGAACAATTGACAACTATAGTTGCAGACGATGATCAGTCGCCCAGCAGAAGCTATCTCCGGCCTTGTGGAGCTGAGGTAATAGATTTGACAACGCCAGCTCCCCTATGCAGAAGCCATTTATGTGGCAAGAAGAGTAGAGTTGCTTCTGTGTATCCTCAGATTATTGACTTGACTAAGTCTCCCAATTTCATCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

413

Amino Acids

46.55

Weight (kDa)

5.39

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	472
AciI	CCGC	2 cut(s)	115, 214
AclWI	GGATC	2 cut(s)	31, 994
AcsI	RAATTY	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	5 cut(s)	449, 532, 613, 772, 895
AfiI	CCNNNNNNNGG	3 cut(s)	48, 49, 354
AgsI	TTSAA	7 cut(s)	284, 418, 441, 557, 657, 809, 942
AjnI	CCWGG	2 cut(s)	290, 348
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	9 cut(s)	102, 191, 339, 414, 520, 758, 1089, 1109, 1136
AluI	AGCT	9 cut(s)	102, 191, 339, 414, 520, 758, 1089, 1109, 1136
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	1221
AlwI	GGATC	2 cut(s)	31, 994
AlwNI	CAGNNNCTG	1 cut(s)	989
AoxI	GGCC	4 cut(s)	124, 288, 1015, 1097
ApeKI	GCWGC	3 cut(s)	108, 329, 332
ApoI	RAATTY	1 cut(s)	587
AseI	ATTAAT	1 cut(s)	693
AspS9I	GGNCC	3 cut(s)	288, 637, 1015
AsuHPI	GGTGA	2 cut(s)	194, 385
AvaII	GGWCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	1165, 1197
Bbv12I	GWGCWC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	1110
BbvI	GCAGC	3 cut(s)	120, 316, 319
BccI	CCATC	3 cut(s)	226, 761, 943
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	292, 350
BciVI	GTATCC	2 cut(s)	973, 1200
BclI	TGATCA	3 cut(s)	664, 823, 1069
BcoDI	GTCTC	1 cut(s)	1221
BfmI	CTRYAG	2 cut(s)	1053, 1235
BfuAI	ACCTGC	1 cut(s)	1030
BfuI	GTATCC	2 cut(s)	973, 1200
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	3 cut(s)	109, 330, 333
BlsI	GCNGC	3 cut(s)	110, 331, 334
Bme1390I	CCNGG	2 cut(s)	292, 350
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	288, 637, 1015
BmrFI	CCNGG	2 cut(s)	292, 350
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	4 cut(s)	252, 857, 926, 985
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	865
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	6 cut(s)	155, 224, 348, 349, 404, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 49, 354
Bse1I	ACTGG	4 cut(s)	277, 445, 609, 844
Bse3DI	GCAATG	1 cut(s)	1032
BseBI	CCWGG	2 cut(s)	292, 350
BseCI	ATCGAT	1 cut(s)	865
BseDI	CCNNGG	6 cut(s)	155, 224, 348, 349, 404, 510
BseGI	GGATG	2 cut(s)	520, 1227
BseLI	CCNNNNNNNGG	3 cut(s)	48, 49, 354
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	2 cut(s)	1101, 1208
BseNI	ACTGG	4 cut(s)	277, 445, 609, 844
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	120, 316, 319
BseYI	CCCAGC	1 cut(s)	1079
BshFI	GGCC	4 cut(s)	126, 290, 1017, 1099
BshVI	ATCGAT	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	482, 1096
BslI	CCNNNNNNNGG	3 cut(s)	48, 49, 354
BsmAI	GTCTC	1 cut(s)	1221
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	4 cut(s)	126, 290, 1017, 1099
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	893
Bsp143I	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
Bsp19I	CCATGG	2 cut(s)	224, 510
BspACI	CCGC	2 cut(s)	115, 214
BspANI	GGCC	4 cut(s)	126, 290, 1017, 1099
BspCNI	CTCAG	2 cut(s)	1102, 1207
BspDI	ATCGAT	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	1030
BspPI	GGATC	2 cut(s)	31, 994
BsrDI	GCAATG	1 cut(s)	1032
BsrGI	TGTACA	1 cut(s)	893
BsrI	ACTGG	4 cut(s)	277, 445, 609, 844
BssECI	CCNNGG	6 cut(s)	155, 224, 348, 349, 404, 510
BssMI	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	3 cut(s)	224, 404, 510
Bst2UI	CCWGG	2 cut(s)	292, 350
Bst4CI	ACNGT	3 cut(s)	148, 307, 427
Bst6I	CTCTTC	2 cut(s)	736, 1163
BstACI	GRCGYC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	893
BstC8I	GCNNGC	5 cut(s)	88, 327, 337, 479, 1134
BstDEI	CTNAG	4 cut(s)	975, 1110, 1194, 1212
BstDSI	CCRYGG	3 cut(s)	155, 224, 510
BstF5I	GGATG	2 cut(s)	520, 1227
BstKTI	GATC	7 cut(s)	26, 372, 667, 799, 826, 989, 1072
BstMAI	GTCTC	1 cut(s)	1221
BstMBI	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 114, 123, 197
BstNI	CCWGG	2 cut(s)	292, 350
BstSCI	CCNGG	2 cut(s)	290, 348
BstSFI	CTRYAG	2 cut(s)	1053, 1235
BstV1I	GCAGC	3 cut(s)	120, 316, 319
BstX2I	RGATCY	2 cut(s)	796, 986
BstXI	CCANNNNNNTGG	1 cut(s)	1160
BstYI	RGATCY	2 cut(s)	796, 986
Bsu15I	ATCGAT	1 cut(s)	865
BsuI	GTATCC	2 cut(s)	973, 1200
BsuRI	GGCC	4 cut(s)	126, 290, 1017, 1099
BsuTUI	ATCGAT	1 cut(s)	865
BtgI	CCRYGG	3 cut(s)	155, 224, 510
BtgZI	GCGATG	1 cut(s)	903
BtsCI	GGATG	2 cut(s)	520, 1227
BtsIMutI	CAGTG	2 cut(s)	153, 423
BveI	ACCTGC	1 cut(s)	1030
Cac8I	GCNNGC	5 cut(s)	88, 327, 337, 479, 1134
CaiI	CAGNNNCTG	1 cut(s)	989
Cfr13I	GGNCC	3 cut(s)	288, 637, 1015
ClaI	ATCGAT	1 cut(s)	865
CseI	GACGC	2 cut(s)	149, 209
Csp6I	GTAC	5 cut(s)	448, 531, 612, 771, 894
CviAII	CATG	4 cut(s)	225, 388, 511, 643
CviQI	GTAC	5 cut(s)	448, 531, 612, 771, 894
DdeI	CTNAG	4 cut(s)	975, 1110, 1194, 1212
DpnI	GATC	7 cut(s)	25, 371, 666, 798, 825, 988, 1071
DpnII	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
DraI	TTTAAA	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	736, 1163
EarI	CTCTTC	2 cut(s)	736, 1163
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	224, 404, 510
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	102
EcoICRI	GAGCTC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	290, 348
EcoT14I	CCWWGG	3 cut(s)	224, 404, 510
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	3 cut(s)	224, 404, 510
FaeI	CATG	4 cut(s)	228, 391, 514, 646
FatI	CATG	4 cut(s)	224, 387, 510, 642
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	600
FbaI	TGATCA	3 cut(s)	664, 823, 1069
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	109, 330, 333
FokI	GGATG	2 cut(s)	527, 1214
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	109, 330, 333
GluI	GCNGC	3 cut(s)	109, 330, 333
GsaI	CCCAGC	1 cut(s)	1083
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	126, 290, 1017, 1099
HapII	CCGG	2 cut(s)	482, 1096
HgaI	GACGC	2 cut(s)	149, 209
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	228, 391, 514, 646
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	3 cut(s)	62, 78, 141
HpaII	CCGG	2 cut(s)	482, 1096
HphI	GGTGA	2 cut(s)	194, 385
Hpy166II	GTNNAC	5 cut(s)	151, 430, 450, 473, 614
Hpy188I	TCNGA	6 cut(s)	28, 67, 544, 637, 796, 1197
Hpy188III	TCNNGA	1 cut(s)	875
Hpy8I	GTNNAC	5 cut(s)	151, 430, 450, 473, 614
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	65, 487, 534
HpyCH4III	ACNGT	3 cut(s)	148, 307, 427
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	8 cut(s)	243, 335, 380, 705, 870, 1025, 1061, 1146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 114, 123, 197
HpyF3I	CTNAG	4 cut(s)	975, 1110, 1194, 1212
HpySE526I	ACGT	1 cut(s)	773
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	228, 391, 514, 646
Ksp22I	TGATCA	3 cut(s)	664, 823, 1069
Kzo9I	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
LmnI	GCTCC	3 cut(s)	512, 1106, 1141
Lsp1109I	GCAGC	3 cut(s)	120, 316, 319
LweI	GCATC	4 cut(s)	252, 857, 926, 985
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	3 cut(s)	774, 946, 970
MalI	GATC	7 cut(s)	25, 371, 666, 798, 825, 988, 1071
MboI	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
MboII	GAAGA	9 cut(s)	24, 73, 80, 575, 734, 753, 794, 930, 1180
MfeI	CAATTG	2 cut(s)	1034, 1043
MflI	RGATCY	2 cut(s)	796, 986
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	9 cut(s)	587, 652, 690, 849, 902, 1010, 1034, 1043, 1222
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	8 cut(s)	46, 347, 407, 411, 880, 964, 1105, 1203
MseI	TTAA	4 cut(s)	342, 693, 852, 1008
MslI	CAYNNNNRTG	3 cut(s)	180, 865, 1158
MspI	CCGG	2 cut(s)	482, 1096
MspR9I	CCNGG	2 cut(s)	292, 350
MunI	CAATTG	2 cut(s)	1034, 1043
Mva1269I	GAATGC	1 cut(s)	936
MvaI	CCWGG	2 cut(s)	292, 350
MwoI	GCNNNNNNNGC	4 cut(s)	108, 114, 123, 197
NcoI	CCATGG	2 cut(s)	224, 510
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
NlaIII	CATG	4 cut(s)	228, 391, 514, 646
NmuCI	GTSAC	1 cut(s)	946
OliI	CACNNNNGTG	1 cut(s)	180
PasI	CCCWGGG	1 cut(s)	349
PctI	GAATGC	1 cut(s)	936
PfeI	GAWTC	3 cut(s)	62, 78, 141
PflFI	GACNNNGTC	1 cut(s)	1213
PkrI	GCNGC	3 cut(s)	110, 331, 334
PshBI	ATTAAT	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	290, 348
PspFI	CCCAGC	1 cut(s)	1079
PspGI	CCWGG	2 cut(s)	290, 348
PspPI	GGNCC	3 cut(s)	288, 637, 1015
PstNI	CAGNNNCTG	1 cut(s)	989
PsuI	RGATCY	2 cut(s)	796, 986
PsyI	GACNNNGTC	1 cut(s)	1213
RsaI	GTAC	5 cut(s)	449, 532, 613, 772, 895
RsaNI	GTAC	5 cut(s)	448, 531, 612, 771, 894
RseI	CAYNNNNRTG	3 cut(s)	180, 865, 1158
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	342, 693, 852, 1008
SatI	GCNGC	3 cut(s)	109, 330, 333
Sau3AI	GATC	7 cut(s)	23, 369, 664, 796, 823, 986, 1069
Sau96I	GGNCC	3 cut(s)	288, 637, 1015
ScrFI	CCNGG	2 cut(s)	292, 350
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	4 cut(s)	252, 857, 926, 985
SfcI	CTRYAG	2 cut(s)	1053, 1235
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	3 cut(s)	180, 865, 1158
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	9 cut(s)	587, 652, 690, 849, 902, 1010, 1034, 1043, 1222
SsiI	CCGC	2 cut(s)	115, 214
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	290, 348
StyI	CCWWGG	3 cut(s)	224, 404, 510
TaaI	ACNGT	3 cut(s)	148, 307, 427
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	1 cut(s)	865
TasI	AATT	9 cut(s)	587, 652, 690, 849, 902, 1010, 1034, 1043, 1222
TatI	WGTACW	3 cut(s)	447, 611, 893
TfiI	GAWTC	3 cut(s)	62, 78, 141
Tru1I	TTAA	4 cut(s)	342, 693, 852, 1008
Tru9I	TTAA	4 cut(s)	342, 693, 852, 1008
TscAI	CASTG	2 cut(s)	153, 430
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	3 cut(s)	108, 329, 332
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	8 cut(s)	506, 576, 594, 609, 617, 711, 768, 1216
TspRI	CASTG	2 cut(s)	153, 430
Tth111I	GACNNNGTC	1 cut(s)	1213
VpaK11BI	GGWCC	1 cut(s)	637
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.