Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Forward (+)

11002530 .. 11006325

Gene Structure 3796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCTTTGGCGACAAAGCCATCGTCTAGATTCACGGTGAATCCACGGCGGCGAATAAGGCAGCACAATGGGGAAATTGGGAGAGGTGCTTGGAGAACCAAGAAGAAGAGGCCATGGGAGATGGCTTTGTGCATTTATGGTTTCCCAACTAACACTTCAGCTCTCCAGTTTGAATGGGCCTGGCAGAACCCATATGTATCAAAGGCAGTGAGGAAGGCTGCAGCGAACTTTAAATCCCTCGGAGGATTTGCCAATAAGATCAAACTTGCATACACAATGCTCACCTTGCCACCTTGGGAGAGTTTGAACCTCACCGTGAACTTTTTTTCAACCGAACACACCAAGCATGCTGCTGGTTGTCCACGCCTCCCAGAACAGATGAAGGTCAAAATTTGCCCCATGGATGAGCTTCCTTCCTGTATATCGGATGATGTTTCTGATAATGAAGATGACTGGTATAAGGAAAAGGAAAGTGACGAAGCTATGCATATCAATACATTAGAGGAAGAAGCATTATCAGACCCAGTAGTTCCTAATTCAGCAGATGATCAGCAGAATGATATTGGCAATAGAAGTAACGAAGTCTACGCACAGAGTAAAGAAGTAGGAGAAGATGAGTGCTATAATGATAAGGTATCTGATGAAGCTATGAACAGTGGTCTCTCCTGGGAAGAAACATTATCAAATTTTATGGTTCACAATTCAGCAAATGACTTGGAAATGGATACTGGCAATACATCTAGTCACATTTATGGATGCGATAAAGAAGTACAAGAAGACATTACTGGGGAATATATCACATCACCAGTGAGAATGCCATACTCCATTGTCATTCCATCATTTGATACAGAAGCAAGTAAGAATACAGGTTTGTTTGATGACAGTACTGTCGAGTTGGATCAACTGGCAAGGCCAACTATAATAGTTGCAGACAATGAACGGTCGCCCAGCAATAGTTATCTCAGGCCTTGTGATTCTGAGGTAGTAGATTTGATAACTCCATCACCACTGTGCAGAAATGGTTTCTGTGGCAAGAGGAGTAGAGTTCCTACATCTTGTCCTGAGATTATCGACTTGACCAAGTCTCCCAATTTCATCCAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

368

Amino Acids

41.36

Weight (kDa)

4.84

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY-YIG	PF01541	12 - 66	7.5e-10	GIY-YIG catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	906
AcsI	RAATTY	2 cut(s)	390, 685
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	771, 886
AgsI	TTSAA	3 cut(s)	173, 307, 330
AjnI	CCWGG	2 cut(s)	179, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AleI	CACNNNNGTG	1 cut(s)	1009
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	4 cut(s)	161, 409, 482, 647
AluI	AGCT	4 cut(s)	161, 409, 482, 647
Alw26I	GTCTC	2 cut(s)	665, 1089
AlwI	GGATC	1 cut(s)	906
AoxI	GGCC	4 cut(s)	110, 177, 911, 965
ApeKI	GCWGC	4 cut(s)	61, 218, 221, 350
ApoI	RAATTY	2 cut(s)	390, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	5 cut(s)	49, 274, 304, 795, 996
BbsI	GAAGAC	1 cut(s)	783
BbvI	GCAGC	4 cut(s)	73, 205, 233, 337
BccI	CCATC	4 cut(s)	28, 115, 844, 1009
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	181, 667
BciVI	GTATCC	1 cut(s)	718
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	665, 1089
BfaI	CTAG	2 cut(s)	27, 741
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	5 cut(s)	50, 62, 219, 222, 351
BlsI	GCNGC	5 cut(s)	51, 63, 220, 223, 352
BmcAI	AGTACT	1 cut(s)	886
Bme1390I	CCNGG	2 cut(s)	181, 667
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	181, 667
BmrI	ACTGGG	2 cut(s)	518, 795
BmsI	GCATC	1 cut(s)	746
BmuI	ACTGGG	2 cut(s)	518, 795
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	6 cut(s)	44, 113, 238, 293, 399, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	1069, 1099
Bse1I	ACTGG	7 cut(s)	166, 458, 524, 733, 790, 806, 909
BseBI	CCWGG	2 cut(s)	181, 667
BseDI	CCNNGG	6 cut(s)	44, 113, 238, 293, 399, 666
BseGI	GGATG	4 cut(s)	409, 433, 761, 1095
BseMII	CTCAG	3 cut(s)	969, 976, 1053
BseNI	ACTGG	7 cut(s)	166, 458, 524, 733, 790, 806, 909
BseRI	GAGGAG	1 cut(s)	1051
BseXI	GCAGC	4 cut(s)	73, 205, 233, 337
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	1 cut(s)	1033
Bsh1285I	CGRYCG	1 cut(s)	944
BshFI	GGCC	4 cut(s)	112, 179, 913, 967
BsiEI	CGRYCG	1 cut(s)	944
BsmAI	GTCTC	2 cut(s)	665, 1089
BsmI	GAATGC	1 cut(s)	819
BsnI	GGCC	4 cut(s)	112, 179, 913, 967
Bso31I	GGTCTC	1 cut(s)	665
Bsp143I	GATC	3 cut(s)	258, 547, 898
Bsp19I	CCATGG	2 cut(s)	113, 399
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	4 cut(s)	112, 179, 913, 967
BspCNI	CTCAG	3 cut(s)	970, 975, 1054
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	906
BspTNI	GGTCTC	1 cut(s)	665
BsrI	ACTGG	7 cut(s)	166, 458, 524, 733, 790, 806, 909
BssECI	CCNNGG	6 cut(s)	44, 113, 238, 293, 399, 666
BssMI	GATC	3 cut(s)	258, 547, 898
BssT1I	CCWWGG	3 cut(s)	113, 293, 399
Bst2UI	CCWGG	2 cut(s)	181, 667
Bst4CI	ACNGT	7 cut(s)	37, 316, 656, 884, 889, 942, 1011
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	962, 978, 1062
BstDSI	CCRYGG	3 cut(s)	44, 113, 399
BstF5I	GGATG	4 cut(s)	409, 433, 761, 1095
BstKTI	GATC	3 cut(s)	261, 550, 901
BstMAI	GTCTC	2 cut(s)	665, 1089
BstMBI	GATC	3 cut(s)	258, 547, 898
BstMCI	CGRYCG	1 cut(s)	944
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 286
BstNI	CCWGG	2 cut(s)	181, 667
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	179, 665
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	4 cut(s)	73, 205, 233, 337
BstV2I	GAAGAC	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	4 cut(s)	112, 179, 913, 967
BtgI	CCRYGG	3 cut(s)	44, 113, 399
BtsCI	GGATG	4 cut(s)	409, 433, 761, 1095
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	4 cut(s)	213, 661, 813, 1007
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	770, 885
CviAII	CATG	3 cut(s)	114, 347, 400
CviQI	GTAC	2 cut(s)	770, 885
DdeI	CTNAG	3 cut(s)	962, 978, 1062
DpnI	GATC	3 cut(s)	260, 549, 900
DpnII	GATC	3 cut(s)	258, 547, 898
DraI	TTTAAA	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	887
DseDI	GACNNNNNNGTC	1 cut(s)	887
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	3 cut(s)	113, 293, 399
Eco147I	AGGCCT	1 cut(s)	967
Eco31I	GGTCTC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	179, 665
EcoT14I	CCWWGG	3 cut(s)	113, 293, 399
EcoT22I	ATGCAT	1 cut(s)	489
ErhI	CCWWGG	3 cut(s)	113, 293, 399
FaeI	CATG	3 cut(s)	117, 350, 403
FatI	CATG	3 cut(s)	113, 346, 399
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	5 cut(s)	50, 62, 219, 222, 351
FokI	GGATG	4 cut(s)	416, 440, 768, 1082
Fsp4HI	GCNGC	5 cut(s)	50, 62, 219, 222, 351
FspBI	CTAG	2 cut(s)	27, 741
GluI	GCNGC	5 cut(s)	50, 62, 219, 222, 351
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	112, 179, 913, 967
Hin1II	CATG	3 cut(s)	117, 350, 403
HinfI	GANTC	3 cut(s)	30, 40, 974
HphI	GGTGA	5 cut(s)	49, 274, 304, 795, 996
Hpy166II	GTNNAC	4 cut(s)	319, 362, 586, 697
Hpy188I	TCNGA	6 cut(s)	242, 427, 439, 520, 640, 979
Hpy188III	TCNNGA	2 cut(s)	27, 1061
Hpy8I	GTNNAC	4 cut(s)	319, 362, 586, 697
HpyAV	CCTTC	3 cut(s)	208, 376, 423
HpyCH4III	ACNGT	7 cut(s)	37, 316, 656, 884, 889, 942, 1011
HpyCH4V	TGCA	6 cut(s)	132, 221, 269, 487, 929, 1014
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 286
HpyF3I	CTNAG	3 cut(s)	962, 978, 1062
Hsp92II	CATG	3 cut(s)	117, 350, 403
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	258, 547, 898
Lsp1109I	GCAGC	4 cut(s)	73, 205, 233, 337
LweI	GCATC	1 cut(s)	746
MaeI	CTAG	2 cut(s)	27, 741
MaeIII	GTNAC	3 cut(s)	473, 575, 743
MalI	GATC	3 cut(s)	260, 549, 900
MboI	GATC	3 cut(s)	258, 547, 898
MboII	GAAGA	7 cut(s)	115, 118, 458, 518, 623, 683, 788
MluCI	AATT	7 cut(s)	75, 390, 535, 685, 700, 1090, 1100
MmeI	TCCRAC	1 cut(s)	876
Mph1103I	ATGCAT	1 cut(s)	489
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	2 cut(s)	750, 1009
MspR9I	CCNGG	2 cut(s)	181, 667
Mva1269I	GAATGC	1 cut(s)	819
MvaI	CCWGG	2 cut(s)	181, 667
MwoI	GCNNNNNNNGC	2 cut(s)	58, 286
NcoI	CCATGG	2 cut(s)	113, 399
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	258, 547, 898
NlaIII	CATG	3 cut(s)	117, 350, 403
NmuCI	GTSAC	2 cut(s)	473, 743
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	1 cut(s)	350
OliI	CACNNNNGTG	1 cut(s)	1009
PaeI	GCATGC	1 cut(s)	350
PceI	AGGCCT	1 cut(s)	967
PctI	GAATGC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	30, 40, 974
PflFI	GACNNNGTC	1 cut(s)	1081
PkrI	GCNGC	5 cut(s)	51, 63, 220, 223, 352
Psp6I	CCWGG	2 cut(s)	179, 665
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	2 cut(s)	179, 665
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	1081
RsaI	GTAC	2 cut(s)	771, 886
RsaNI	GTAC	2 cut(s)	770, 885
RseI	CAYNNNNRTG	2 cut(s)	750, 1009
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	5 cut(s)	50, 62, 219, 222, 351
Sau3AI	GATC	3 cut(s)	258, 547, 898
Sau96I	GGNCC	1 cut(s)	177
ScaI	AGTACT	1 cut(s)	886
ScrFI	CCNGG	2 cut(s)	181, 667
SfaNI	GCATC	1 cut(s)	746
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	750, 1009
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	7 cut(s)	75, 390, 535, 685, 700, 1090, 1100
SseBI	AGGCCT	1 cut(s)	967
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	27, 741
StuI	AGGCCT	1 cut(s)	967
StyD4I	CCNGG	2 cut(s)	179, 665
StyI	CCWWGG	3 cut(s)	113, 293, 399
TaaI	ACNGT	7 cut(s)	37, 316, 656, 884, 889, 942, 1011
TaqI	TCGA	2 cut(s)	891, 1071
TasI	AATT	7 cut(s)	75, 390, 535, 685, 700, 1090, 1100
TatI	WGTACW	2 cut(s)	769, 884
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	3 cut(s)	30, 40, 974
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	4 cut(s)	213, 661, 813, 1014
TseFI	GTSAC	2 cut(s)	473, 743
TseI	GCWGC	4 cut(s)	61, 218, 221, 350
Tsp45I	GTSAC	2 cut(s)	473, 743
TspDTI	ATGAA	6 cut(s)	395, 459, 657, 665, 951, 1084
TspRI	CASTG	4 cut(s)	213, 661, 813, 1014
Tth111I	GACNNNGTC	1 cut(s)	1081
XapI	RAATTY	2 cut(s)	390, 685
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	2 cut(s)	27, 741
ZrmI	AGTACT	1 cut(s)	886
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.