Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

79203348 .. 79205688

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG506900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCTTGTGCATTTATGGTTTCCCAACTAACACTTCAGCTCTCCAGTTTGAATGGGCCTGGCAGAACCCATATGTATCAAAGGCAGTAAGGAAGGCTGCAGCGAACTTTAAATCCCTCGGAGGATTTGCCAATAAGATCAAACTTGCATACACAATGCTCACCTTGCCGCCTTGGGAGAGTTTGAACCTCACCGTGAACTTTTTTTCAACCGAACACACCAAGCATGCTGCTGGTTGTCCACGCCTCCCAGAACAGATGAAGGTCAAAATTTGCCCCATGGATGAGCTTCCTTCCTGTATATCGGATGATGTTTCTGATAATGAAGATGAGTGGTATAAGGAAAAGGAAAGTGACGAAGCTATGCATATCAATACATTAGAGGGAGAAGCATTATTAGACCCAGTAGTTCCTAATTCAGCAGATGATCAGCAGAATGATATTGGCAATAGAAGTAACGAAGCCTACGCACAGAGTAAAGAAGTAGGAGAAGATGAGTGGTATAATAATAAGGTATCTGATGAAGCTATGAACAGTGGTCTCTCCTGGGAAGAAACATTACCAAATTTTATGGTTCACGATTCAGCAAATGATTTGGAAATGGATACTGGAAATACATCTAGTCACGTTTATGAATGCGATAAAGAAGTACAAGAAGACATCACTGGGGAATATATCACATCACCAGTGAGAATGCCATACTCCATTGTCATTCCATCATTTGATACAGAAGCAAGTAAGAATACAGGTTTGTTTGATGACAGTACTGTCGAGTTGGATCAACCGGCAAGGGAACAATCACCAACTATAATAGTTGCAGACAATGAACCGTCGCCCAGCAATAGTTATCTCAGGCCTTGTGATTCTGAGGTAGTAGATTTGATAACTCCATCACCACTGTGCAGAAATGGTTTCTGTGGCAAGAGGAGTAGAGTTCCTACATCTTATCCTGAGATTATCGACTTGACCAAGTCTCCCAATTTCATCCAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

331

Amino Acids

37.02

Weight (kDa)

4.35

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	767
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	270, 565
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	2 cut(s)	651, 766
AgsI	TTSAA	3 cut(s)	53, 187, 210
AjnI	CCWGG	2 cut(s)	59, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AleI	CACNNNNGTG	1 cut(s)	898
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	41, 289, 362, 527
AluI	AGCT	4 cut(s)	41, 289, 362, 527
Alw26I	GTCTC	2 cut(s)	545, 978
AlwI	GGATC	1 cut(s)	786
AoxI	GGCC	3 cut(s)	3, 57, 854
ApeKI	GCWGC	3 cut(s)	98, 101, 230
ApoI	RAATTY	2 cut(s)	270, 565
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	5 cut(s)	154, 184, 675, 792, 885
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	85, 113, 217
BccI	CCATC	2 cut(s)	724, 898
BciT130I	CCWGG	2 cut(s)	61, 547
BciVI	GTATCC	1 cut(s)	598
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	545, 978
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	4 cut(s)	99, 102, 170, 231
BlsI	GCNGC	4 cut(s)	100, 103, 171, 232
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	2 cut(s)	61, 547
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	61, 547
BmrI	ACTGGG	2 cut(s)	398, 675
BmuI	ACTGGG	2 cut(s)	398, 675
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	4 cut(s)	118, 173, 279, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bse118I	RCCGGY	1 cut(s)	784
Bse1I	ACTGG	5 cut(s)	46, 404, 613, 670, 686
BseBI	CCWGG	2 cut(s)	61, 547
BseDI	CCNNGG	4 cut(s)	118, 173, 279, 546
BseGI	GGATG	3 cut(s)	289, 313, 984
BseMII	CTCAG	3 cut(s)	858, 865, 942
BseNI	ACTGG	5 cut(s)	46, 404, 613, 670, 686
BseRI	GAGGAG	1 cut(s)	940
BseXI	GCAGC	3 cut(s)	85, 113, 217
BseYI	CCCAGC	1 cut(s)	836
BsgI	GTGCAG	1 cut(s)	922
BshFI	GGCC	3 cut(s)	5, 59, 856
BsiSI	CCGG	1 cut(s)	785
BsmAI	GTCTC	2 cut(s)	545, 978
BsmI	GAATGC	2 cut(s)	641, 699
BsnI	GGCC	3 cut(s)	5, 59, 856
Bso31I	GGTCTC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	138, 427, 778
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	3 cut(s)	5, 59, 856
BspCNI	CTCAG	3 cut(s)	859, 864, 943
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	786
BspTNI	GGTCTC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	784
BsrI	ACTGG	5 cut(s)	46, 404, 613, 670, 686
BssAI	RCCGGY	1 cut(s)	784
BssECI	CCNNGG	4 cut(s)	118, 173, 279, 546
BssMI	GATC	3 cut(s)	138, 427, 778
BssT1I	CCWWGG	2 cut(s)	173, 279
Bst2UI	CCWGG	2 cut(s)	61, 547
Bst4CI	ACNGT	6 cut(s)	196, 536, 764, 769, 831, 900
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	851, 867, 951
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	289, 313, 984
BstKTI	GATC	3 cut(s)	141, 430, 781
BstMAI	GTCTC	2 cut(s)	545, 978
BstMBI	GATC	3 cut(s)	138, 427, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	61, 547
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	59, 545
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	85, 113, 217
BstV2I	GAAGAC	1 cut(s)	663
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	3 cut(s)	5, 59, 856
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	289, 313, 984
BtsIMutI	CAGTG	4 cut(s)	541, 663, 693, 896
Cac8I	GCNNGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	784
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	650, 765
CviAII	CATG	2 cut(s)	227, 280
CviJI	RGCY	9 cut(s)	5, 41, 59, 98, 289, 362, 464, 527, 856
CviKI_1	RGCY	9 cut(s)	5, 41, 59, 98, 289, 362, 464, 527, 856
CviQI	GTAC	2 cut(s)	650, 765
DdeI	CTNAG	3 cut(s)	851, 867, 951
DpnI	GATC	3 cut(s)	140, 429, 780
DpnII	GATC	3 cut(s)	138, 427, 778
DraI	TTTAAA	1 cut(s)	112
DrdI	GACNNNNNNGTC	1 cut(s)	767
DseDI	GACNNNNNNGTC	1 cut(s)	767
Eco130I	CCWWGG	2 cut(s)	173, 279
Eco147I	AGGCCT	1 cut(s)	856
Eco31I	GGTCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	59, 545
EcoT14I	CCWWGG	2 cut(s)	173, 279
EcoT22I	ATGCAT	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	173, 279
FaeI	CATG	2 cut(s)	230, 283
FatI	CATG	2 cut(s)	226, 279
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	4 cut(s)	99, 102, 170, 231
FokI	GGATG	3 cut(s)	296, 320, 971
Fsp4HI	GCNGC	4 cut(s)	99, 102, 170, 231
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	4 cut(s)	99, 102, 170, 231
GsaI	CCCAGC	1 cut(s)	840
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	5, 59, 856
HapII	CCGG	1 cut(s)	785
Hin1II	CATG	2 cut(s)	230, 283
HinfI	GANTC	2 cut(s)	581, 863
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	5 cut(s)	154, 184, 675, 792, 885
Hpy166II	GTNNAC	3 cut(s)	199, 242, 577
Hpy188I	TCNGA	5 cut(s)	122, 307, 319, 520, 868
Hpy188III	TCNNGA	2 cut(s)	578, 950
Hpy8I	GTNNAC	3 cut(s)	199, 242, 577
Hpy99I	CGWCG	1 cut(s)	835
HpyAV	CCTTC	3 cut(s)	88, 256, 303
HpyCH4III	ACNGT	6 cut(s)	196, 536, 764, 769, 831, 900
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	6 cut(s)	12, 101, 149, 367, 818, 903
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	851, 867, 951
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	230, 283
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	138, 427, 778
Lsp1109I	GCAGC	3 cut(s)	85, 113, 217
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	3 cut(s)	353, 455, 623
MalI	GATC	3 cut(s)	140, 429, 780
MboI	GATC	3 cut(s)	138, 427, 778
MboII	GAAGA	4 cut(s)	338, 503, 563, 668
MluCI	AATT	5 cut(s)	270, 415, 565, 979, 989
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	7 cut(s)	116, 128, 200, 257, 376, 862, 918
Mph1103I	ATGCAT	1 cut(s)	369
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	630, 898
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	2 cut(s)	61, 547
Mva1269I	GAATGC	2 cut(s)	641, 699
MvaI	CCWGG	2 cut(s)	61, 547
MwoI	GCNNNNNNNGC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	3 cut(s)	138, 427, 778
NlaIII	CATG	2 cut(s)	230, 283
NmuCI	GTSAC	2 cut(s)	353, 623
NsiI	ATGCAT	1 cut(s)	369
NspI	RCATGY	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	856
PctI	GAATGC	2 cut(s)	641, 699
PfeI	GAWTC	2 cut(s)	581, 863
PflFI	GACNNNGTC	1 cut(s)	970
PkrI	GCNGC	4 cut(s)	100, 103, 171, 232
Psp6I	CCWGG	2 cut(s)	59, 545
PspFI	CCCAGC	1 cut(s)	836
PspGI	CCWGG	2 cut(s)	59, 545
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	970
RsaI	GTAC	2 cut(s)	651, 766
RsaNI	GTAC	2 cut(s)	650, 765
RseI	CAYNNNNRTG	2 cut(s)	630, 898
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	4 cut(s)	99, 102, 170, 231
Sau3AI	GATC	3 cut(s)	138, 427, 778
Sau96I	GGNCC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	766
ScrFI	CCNGG	2 cut(s)	61, 547
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	630, 898
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	5 cut(s)	270, 415, 565, 979, 989
SseBI	AGGCCT	1 cut(s)	856
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	856
StyD4I	CCNGG	2 cut(s)	59, 545
StyI	CCWWGG	2 cut(s)	173, 279
TaaI	ACNGT	6 cut(s)	196, 536, 764, 769, 831, 900
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	771, 960
TasI	AATT	5 cut(s)	270, 415, 565, 979, 989
TatI	WGTACW	2 cut(s)	649, 764
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	581, 863
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	4 cut(s)	541, 670, 693, 903
TseFI	GTSAC	2 cut(s)	353, 623
TseI	GCWGC	3 cut(s)	98, 101, 230
Tsp45I	GTSAC	2 cut(s)	353, 623
TspDTI	ATGAA	7 cut(s)	275, 339, 537, 545, 648, 840, 973
TspRI	CASTG	4 cut(s)	541, 670, 693, 903
Tth111I	GACNNNGTC	1 cut(s)	970
XapI	RAATTY	2 cut(s)	270, 565
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	766
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.