Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

5276427 .. 5280262

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G073500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCAGAAGAAGGACGATTCTTCGCATGCTGTTGAGCTCTCGCAGCCCCCGCTACAAAGGCCACACCTATATTTGATTCACAGTGAACCCACGGCGTCGTATAAGACAGCAAAATGGTGCAATAGCGCAAGGTGCTTGGAGATGGTCTTGTGCATCTATGTTTACCAGTTTGAATGGGCCTGGCAGCACCCAACTGTATCGAAGGCAGTTAGGCAGGCTGCTGCAAGCTTTAAATCACTGGGAGGGGTTGTCAGTAAGATCAAACTTGCATACACCATGCTCACTCTCCCTCCTTGGCAGAGGTATCATCTTATCTTGTCTTATTATCTTCCTTGTGAGTTGTCAATGGATGAATATACATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

8.66

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	37, 228
AluI	AGCT	2 cut(s)	37, 228
Alw21I	GWGCWC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	59, 177
ApeKI	GCWGC	4 cut(s)	43, 184, 218, 221
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	55, 196, 205, 208
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	181
BisI	GCNGC	4 cut(s)	44, 185, 219, 222
BlsI	GCNGC	4 cut(s)	45, 186, 220, 223
Bme1390I	CCNGG	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	90, 293
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 274, 304
Bse1I	ACTGG	2 cut(s)	166, 243
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	90, 293
BseGI	GGATG	1 cut(s)	355
BseNI	ACTGG	2 cut(s)	166, 243
BseXI	GCAGC	4 cut(s)	55, 196, 205, 208
BshFI	GGCC	2 cut(s)	61, 179
BsiHKAI	GWGCWC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	61, 179
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	61, 179
BsrI	ACTGG	2 cut(s)	166, 243
BssECI	CCNNGG	2 cut(s)	90, 293
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	83, 196
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	27, 216, 226
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 49, 58, 132
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	4 cut(s)	55, 196, 205, 208
BsuRI	GGCC	2 cut(s)	61, 179
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	88, 236
Cac8I	GCNNGC	3 cut(s)	27, 216, 226
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	26, 277
CviJI	RGCY	6 cut(s)	37, 46, 61, 179, 218, 228
CviKI_1	RGCY	6 cut(s)	37, 46, 61, 179, 218, 228
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DraI	TTTAAA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	2 cut(s)	29, 280
FaiI	YATR	9 cut(s)	27, 70, 102, 159, 271, 278, 357, 361, 363
FatI	CATG	2 cut(s)	25, 276
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	44, 185, 219, 222
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	44, 185, 219, 222
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	44, 185, 219, 222
HaeIII	GGCC	2 cut(s)	61, 179
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	29, 280
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	2 cut(s)	17, 76
Hpy166II	GTNNAC	2 cut(s)	86, 163
Hpy8I	GTNNAC	2 cut(s)	86, 163
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	4, 196
HpyCH4III	ACNGT	2 cut(s)	83, 196
HpyCH4V	TGCA	5 cut(s)	4, 120, 153, 224, 269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 49, 58, 132
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	29, 280
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	5 cut(s)	166, 179, 193, 200, 224
Lsp1109I	GCAGC	4 cut(s)	55, 196, 205, 208
LweI	GCATC	1 cut(s)	162
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	12, 19, 320
MhlI	GDGCHC	1 cut(s)	39
MnlI	CCTC	3 cut(s)	236, 294, 300
MseI	TTAA	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	43, 49, 58, 132
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	29, 280
NspI	RCATGY	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	17, 76
PkrI	GCNGC	4 cut(s)	45, 186, 220, 223
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	4 cut(s)	44, 185, 219, 222
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	5 cut(s)	39, 69, 134, 230, 305
SfaNI	GCATC	1 cut(s)	162
SphI	GCATGC	1 cut(s)	29
SsiI	CCGC	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	2 cut(s)	83, 196
TaqI	TCGA	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	17, 76
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	88, 243
TseI	GCWGC	4 cut(s)	43, 184, 218, 221
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	2 cut(s)	88, 243
XceI	RCATGY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.