Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

8673832 .. 8676269

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G108400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCAAGAAGCAGAAATCCCAGAAACCCTAATCGCGGTGGAGGAAGAAGCAGAAGAAGGACGATTCTTCGCATGCTATCTGTTGAGCTCTCGCAGCCCCCGCTACAAAGGCCACGCCTATATTGGAGCTTGGAGTAATAAGAGAGCCCACTTAAACTCTGTGCCTTTGTTTGTGCTTATTTGGTTTGAATGGGCCTGGCAGCACCCAACTGTATCGAAGGCGGTTAGGCAGGCTGCTGCAAGCTTTAAATCACTGGGAGGGCTTGTCCGTAAGATCAAACTTGCATACACCATCCTCACTCCCCCTCCTTGGCAGAGCTTGAAAATCACTGTAAACTTCTTTTCAACCCAGTACACCAAACATTCTGCTGGTTGTCCACCCCTTCCGGAACAGATGAAGGTCAAAGTCTGCTCTATGGATGAGCTTCCTTCCTGTACTAAACCGTCTGATGACCTTTTGGAAAATGAAGATGAGTGGTGTCATGAAAGGGAATGTGATGAAGATATGAATTCCAGTACGCTACCCGAAGAAACATTATTGGACTTCAGGACTCATAATTCAGCAGATGATCAGCAGAAAACATTATCAGATCTTATAGTTCAAAGTTCAGCAGATGATCAGCAGGATGATACTGGCAAGATAATTAACGAAGCATATGGATGCAGTGAAGTAGTAGGAGAGGATTGTACAGATCAATTTGGTTTTATGGCATCGCCAGTGAGAATGCCATCTTCAAATGGCACTACCTCATTTGACACAGAAGTAACTAAAGATATAGGTTTGTGTGGATCTTCTGATGACATGAGTGTTGATTTGGGCCGACCTGCAAGGGAACAATCGACAGCTATAGTTGCAGATGATGATCAGTCTCCCAGCAGAAGCTATCTCCGGCCTTGTGGAGCTGAGGTAATAGATTTGACAACCCATCCCCTATGCAGAAGCCATTTAATATGTTTGATGATTTTATGGTACACAGTTAAAGAAACTAAAGCCGATAAAAATCGTGAGACCACATTCTCAAAGTTACTTGGGCTCCAAGCTTCACCAAGTAGTTGTTCCATATCGGCCATCGTATTTTCCTCATTCTCAAATTGTTCCATGTCGGCCATTGTATTTTCCTCAAAGATTGTCAGATCAATGGGATCAAAGCCCACAAGATCACCACCAATTGGACTAGAAGAGCAGCCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

398

Amino Acids

44.0

Weight (kDa)

4.91

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	1 cut(s)	1169
AccII	CGCG	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	3 cut(s)	35, 100, 221
AclWI	GGATC	2 cut(s)	796, 1150
AcoI	YGGCCR	2 cut(s)	1065, 1104
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	529
AfaI	GTAC	5 cut(s)	353, 436, 517, 688, 971
AfiI	CCNNNNNNNGG	3 cut(s)	34, 309, 1169
AgsI	TTSAA	5 cut(s)	188, 322, 345, 602, 735
AjnI	CCWGG	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	1039, 1071
AluBI	AGCT	9 cut(s)	87, 128, 243, 318, 424, 845, 882, 902, 1040
AluI	AGCT	9 cut(s)	87, 128, 243, 318, 424, 845, 882, 902, 1040
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	2 cut(s)	873, 1001
AlwI	GGATC	2 cut(s)	796, 1150
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	6 cut(s)	109, 192, 817, 890, 1065, 1104
ApeKI	GCWGC	5 cut(s)	93, 199, 233, 236, 1183
ApoI	RAATTY	1 cut(s)	508
AspS9I	GGNCC	2 cut(s)	192, 817
AsuHPI	GGTGA	2 cut(s)	1035, 1152
BanII	GRGCYC	3 cut(s)	89, 148, 1035
Bbv12I	GWGCWC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	4 cut(s)	105, 211, 220, 223
BccI	CCATC	4 cut(s)	299, 736, 933, 1076
BciT130I	CCWGG	1 cut(s)	196
BclI	TGATCA	3 cut(s)	568, 616, 862
BcoDI	GTCTC	2 cut(s)	873, 1001
BfaI	CTAG	1 cut(s)	1175
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	832
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	5 cut(s)	94, 200, 234, 237, 1184
BlsI	GCNGC	5 cut(s)	95, 201, 235, 238, 1185
Bme1390I	CCNGG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	192, 817
BmiI	GGNNCC	1 cut(s)	1034
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	2 cut(s)	263, 343
BmsI	GCATC	2 cut(s)	650, 719
BmuI	ACTGGG	2 cut(s)	263, 343
Bpu10I	CCTNAGC	1 cut(s)	903
BsaBI	GATNNNNATC	2 cut(s)	861, 999
BsaI	GGTCTC	1 cut(s)	1001
BsaJI	CCNNGG	1 cut(s)	308
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	8 cut(s)	249, 279, 289, 319, 891, 921, 1017, 1047
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 309, 1169
Bse1I	ACTGG	5 cut(s)	258, 349, 513, 637, 716
Bse8I	GATNNNNATC	2 cut(s)	861, 999
BseAI	TCCGGA	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	5 cut(s)	291, 424, 631, 665, 925
BseJI	GATNNNNATC	2 cut(s)	861, 999
BseLI	CCNNNNNNNGG	3 cut(s)	34, 309, 1169
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	5 cut(s)	258, 349, 513, 637, 716
BseXI	GCAGC	4 cut(s)	105, 211, 220, 223
BseYI	CCCAGC	1 cut(s)	872
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	6 cut(s)	111, 194, 819, 892, 1067, 1106
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	386, 889
BslI	CCNNNNNNNGG	3 cut(s)	34, 309, 1169
BsmAI	GTCTC	2 cut(s)	873, 1001
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	6 cut(s)	111, 194, 819, 892, 1067, 1106
Bso31I	GGTCTC	1 cut(s)	1001
Bsp1286I	GDGCHC	3 cut(s)	89, 148, 1035
Bsp13I	TCCGGA	1 cut(s)	385
Bsp1407I	TGTACA	1 cut(s)	686
BspACI	CCGC	3 cut(s)	35, 100, 221
BspANI	GGCC	6 cut(s)	111, 194, 819, 892, 1067, 1106
BspCNI	CTCAG	1 cut(s)	895
BspEI	TCCGGA	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	1034
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	2 cut(s)	796, 1150
BspQI	GCTCTTC	1 cut(s)	1173
BspTNI	GGTCTC	1 cut(s)	1001
BsrGI	TGTACA	1 cut(s)	686
BsrI	ACTGG	5 cut(s)	258, 349, 513, 637, 716
BssECI	CCNNGG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	4 cut(s)	211, 331, 444, 976
Bst6I	CTCTTC	1 cut(s)	1173
BstAUI	TGTACA	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	73, 231, 241
BstDEI	CTNAG	1 cut(s)	903
BstF5I	GGATG	5 cut(s)	291, 424, 631, 665, 925
BstFNI	CGCG	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	873, 1001
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 99, 108, 851
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	4 cut(s)	105, 211, 220, 223
BstX2I	RGATCY	2 cut(s)	589, 788
BstYI	RGATCY	2 cut(s)	589, 788
BsuRI	GGCC	6 cut(s)	111, 194, 819, 892, 1067, 1106
BtgZI	GCGATG	1 cut(s)	696
BtsCI	GGATG	5 cut(s)	291, 424, 631, 665, 925
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	4 cut(s)	251, 327, 670, 723
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	3 cut(s)	73, 231, 241
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	192, 817
Csp6I	GTAC	5 cut(s)	352, 435, 516, 687, 970
CviAII	CATG	4 cut(s)	72, 482, 802, 1099
CviQI	GTAC	5 cut(s)	352, 435, 516, 687, 970
DdeI	CTNAG	1 cut(s)	903
DraI	TTTAAA	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	1065, 1104
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	3 cut(s)	89, 148, 1035
Eco31I	GGTCTC	1 cut(s)	1001
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	3 cut(s)	89, 148, 1035
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	4 cut(s)	75, 485, 805, 1102
FatI	CATG	4 cut(s)	71, 481, 801, 1098
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	3 cut(s)	568, 616, 862
Fnu4HI	GCNGC	5 cut(s)	94, 200, 234, 237, 1184
FokI	GGATG	5 cut(s)	278, 431, 638, 672, 912
FriOI	GRGCYC	3 cut(s)	89, 148, 1035
Fsp4HI	GCNGC	5 cut(s)	94, 200, 234, 237, 1184
FspBI	CTAG	1 cut(s)	1175
GluI	GCNGC	5 cut(s)	94, 200, 234, 237, 1184
GsaI	CCCAGC	1 cut(s)	876
HaeIII	GGCC	6 cut(s)	111, 194, 819, 892, 1067, 1106
HapII	CCGG	2 cut(s)	386, 889
Hin1II	CATG	4 cut(s)	75, 485, 805, 1102
HindIII	AAGCTT	2 cut(s)	241, 1038
HinfI	GANTC	2 cut(s)	63, 550
HpaII	CCGG	2 cut(s)	386, 889
HphI	GGTGA	2 cut(s)	1035, 1152
Hpy166II	GTNNAC	4 cut(s)	334, 354, 377, 972
Hpy188I	TCNGA	4 cut(s)	448, 589, 796, 1133
Hpy188III	TCNNGA	4 cut(s)	386, 482, 547, 1004
Hpy8I	GTNNAC	4 cut(s)	334, 354, 377, 972
HpyAV	CCTTC	5 cut(s)	50, 211, 391, 392, 438
HpyCH4III	ACNGT	4 cut(s)	211, 331, 444, 976
HpyCH4V	TGCA	7 cut(s)	4, 239, 284, 663, 827, 854, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 99, 108, 851
HpyF3I	CTNAG	1 cut(s)	903
Hsp92II	CATG	4 cut(s)	75, 485, 805, 1102
Kpn2I	TCCGGA	1 cut(s)	385
Ksp22I	TGATCA	3 cut(s)	568, 616, 862
LguI	GCTCTTC	1 cut(s)	1173
LmnI	GCTCC	3 cut(s)	125, 899, 1038
Lsp1109I	GCAGC	4 cut(s)	105, 211, 220, 223
LweI	GCATC	2 cut(s)	650, 719
MaeI	CTAG	1 cut(s)	1175
MaeIII	GTNAC	2 cut(s)	763, 1023
MboII	GAAGA	9 cut(s)	56, 58, 65, 479, 512, 539, 723, 783, 1190
MfeI	CAATTG	1 cut(s)	1167
MflI	RGATCY	2 cut(s)	589, 788
MhlI	GDGCHC	3 cut(s)	89, 148, 1035
MluCI	AATT	6 cut(s)	508, 556, 642, 695, 1090, 1167
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	9 cut(s)	34, 251, 305, 315, 673, 757, 898, 1090, 1129
MroI	TCCGGA	1 cut(s)	385
MseI	TTAA	5 cut(s)	152, 246, 645, 947, 978
MslI	CAYNNNNRTG	1 cut(s)	658
MspI	CCGG	2 cut(s)	386, 889
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	1167
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	93, 99, 108, 851
NdeI	CATATG	1 cut(s)	655
NlaIII	CATG	4 cut(s)	75, 485, 805, 1102
NlaIV	GGNNCC	1 cut(s)	1034
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PagI	TCATGA	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	1173
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	1169
PkrI	GCNGC	5 cut(s)	95, 201, 235, 238, 1185
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	1034
PspPI	GGNCC	2 cut(s)	192, 817
PsuI	RGATCY	2 cut(s)	589, 788
RsaI	GTAC	5 cut(s)	353, 436, 517, 688, 971
RsaNI	GTAC	5 cut(s)	352, 435, 516, 687, 970
RseI	CAYNNNNRTG	1 cut(s)	658
SacI	GAGCTC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	1173
SaqAI	TTAA	5 cut(s)	152, 246, 645, 947, 978
SatI	GCNGC	5 cut(s)	94, 200, 234, 237, 1184
Sau96I	GGNCC	2 cut(s)	192, 817
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	3 cut(s)	89, 148, 1035
SfaNI	GCATC	2 cut(s)	650, 719
SfcI	CTRYAG	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	658
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	6 cut(s)	508, 556, 642, 695, 1090, 1167
SsiI	CCGC	3 cut(s)	35, 100, 221
SspMI	CTAG	1 cut(s)	1175
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	211, 331, 444, 976
TaqI	TCGA	2 cut(s)	215, 839
TasI	AATT	6 cut(s)	508, 556, 642, 695, 1090, 1167
TatI	WGTACW	3 cut(s)	351, 434, 686
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	5 cut(s)	152, 246, 645, 947, 978
Tru9I	TTAA	5 cut(s)	152, 246, 645, 947, 978
TscAI	CASTG	4 cut(s)	258, 334, 670, 723
TseI	GCWGC	5 cut(s)	93, 199, 233, 236, 1183
TspDTI	ATGAA	5 cut(s)	410, 480, 498, 513, 521
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	4 cut(s)	258, 334, 670, 723
Van91I	CCANNNNNTGG	1 cut(s)	1169
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XspI	CTAG	1 cut(s)	1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.