pycom03g04370

Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
3409713 .. 3411870
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04370.4

Sequence Viewer

Length: 1266 bp
ATGACGAGTCATTCCCATTTCAATATACCTCTCAGTGTGACTCTGTCTGCTTGTGAGGGAGAGTGTCTGAGAGATGAGGCAGAAGAAAAAGGCAGGATCAGAAATCCCAGAAACCCTAACGGCGATGGCAGCAGCAGAAGAAGGAGAAGGTCGATTCTTTGCTTGCTATCTGTTGAGCTCTCTCAGCCCTCGCTACAAAGGCCACACTTATATTGGATTCACAGTGAATCCGCGGCGGCGAATAAGGCAGCACAACGGAGAAATATCGCAAGGAGCTTGGAGAACGAAGCGAAAGCGGCCTTGGGAGATGGTCTTGTGCATCTATGGTTTCCCAACAAACGTTTCTGCTCTCCAGTGCAGTTTGAATGGGCCTGGCAGAATCCAACTGTATCAAAGGCAGTTAGGCAGGCTGCTGCAAGTTTTAAAACCCTTGGAGGACTTGTCAGCAAGATCAAGCTTGCATACTCAATGCTCACTCTTCCGCCATGGCCCAGCTTGAACCTCACCGTGAACTTCTTTTCGAGCCAGTACATCAAGCATTCTGTCGGCTGTCCACGCCTGCCGGAGCAGATGAAGGTCAAAGTTTGTTCCATGGATGATCTTCCTTCCTCAACCAAACTGTCTGACGACATTTTCGAAAATGAAGATGATTGGTGCAATGAAAGGGAATGTGATGAAGATATGTGTACCAGTAGTTCACCACAGGAAGACACATTATCGGACATCATGGGTCATAATTCAGCAGGCGATCAGCAAAATGATATCGGCAATAAAGTTGGAAATTATGAGTGCTACAATGAAAAAGAATGCGATGAATTCTTGATTGACAGCACATTACAGGAAGAAACATTATCAGATTTTATAATTCATAATTCAGAAGATGATCAGCAGGATGATACAGGAATGACAATTAACGACGTATATGGAGACAGTCAAGAAGTAAGAGACGATTTCACAGAGCAATTTGGTTTTATAACATCACCGGTGAGAATTCCATCTTCGAATGTGGCTACCAGTACTACATCTTCTGATGATTATAGCGTTGAATTGAGGCATCCTGTAAGGGAACAATTGACAACTACAGTTACAGACGATGATCAGTCACCGGGCAAAAGTTATCTCAGGCCTTGTGGAGGTGAGATAATAGATTTGACAACTCCAGCTCCCCAATGCAGAGGCGGTTTACGCGGGAAAAAGAGCAGAGTTACTAGTGCTTATCCTCAGATTATTGACTTGACTTTGTCACCAAATTTCATCCAGTTATAG

Protein Analysis

422

Amino Acids

47.1

Weight (kDa)

4.9

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 863, 974
AccII CGCG 2 cut(s) 233, 1188
AciI CCGC 7 cut(s) 231, 233, 236, 296, 482, 1179, 1188
AclI AACGTT 1 cut(s) 340
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 3 cut(s) 815, 990, 1249
AfaI GTAC 3 cut(s) 530, 688, 1018
AfiI CCNNNNNNNGG 1 cut(s) 1133
AgeI ACCGGT 1 cut(s) 982
AgsI TTSAA 4 cut(s) 22, 365, 499, 1046
AhlI ACTAGT 1 cut(s) 1208
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 4 cut(s) 284, 316, 326, 358
AluBI AGCT 5 cut(s) 178, 276, 457, 495, 1163
AluI AGCT 5 cut(s) 178, 276, 457, 495, 1163
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 921, 939
AlwI GGATC 1 cut(s) 104
AoxI GGCC 5 cut(s) 200, 297, 369, 488, 1124
ApeKI GCWGC 5 cut(s) 129, 132, 248, 410, 413
ApoI RAATTY 3 cut(s) 815, 990, 1249
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AsiGI ACCGGT 1 cut(s) 982
AspS9I GGNCC 2 cut(s) 369, 489
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 7 cut(s) 496, 690, 972, 997, 1095, 1148, 1236
AsuII TTCGAA 2 cut(s) 636, 1001
BanII GRGCYC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 1009, 1041
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 5 cut(s) 141, 144, 260, 397, 400
BccI CCATC 3 cut(s) 119, 302, 1003
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 373
BclI TGATCA 2 cut(s) 883, 1096
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 2 cut(s) 921, 939
BcuI ACTAGT 1 cut(s) 1208
BfaI CTAG 1 cut(s) 1209
BfmI CTRYAG 1 cut(s) 1080
BisI GCNGC 8 cut(s) 130, 133, 234, 237, 249, 297, 411, 414
BlsI GCNGC 8 cut(s) 131, 134, 235, 238, 250, 298, 412, 415
BmcAI AGTACT 1 cut(s) 1018
Bme1390I CCNGG 2 cut(s) 373, 1107
BmgT120I GGNCC 2 cut(s) 369, 489
BmrFI CCNGG 2 cut(s) 373, 1107
BmsI GCATC 2 cut(s) 328, 1063
BpiI GAAGAC 1 cut(s) 714
BpmI CTGGAG 2 cut(s) 336, 1143
Bpu14I TTCGAA 2 cut(s) 636, 1001
BpuMI CCSGG 1 cut(s) 1107
BsaJI CCNNGG 5 cut(s) 231, 300, 430, 485, 591
BsaWI WCCGGW 1 cut(s) 982
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 1147, 1177
Bsc4I CCNNNNNNNGG 1 cut(s) 1133
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 5 cut(s) 353, 526, 690, 1014, 1258
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 5 cut(s) 231, 300, 430, 485, 591
BseGI GGATG 4 cut(s) 601, 898, 1054, 1254
BseLI CCNNNNNNNGG 1 cut(s) 1133
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 5 cut(s) 46, 59, 197, 1135, 1235
BseNI ACTGG 5 cut(s) 353, 526, 690, 1014, 1258
BseXI GCAGC 5 cut(s) 141, 144, 260, 397, 400
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 377
Bsh1236I CGCG 2 cut(s) 233, 1188
BshFI GGCC 5 cut(s) 202, 299, 371, 490, 1126
BshTI ACCGGT 1 cut(s) 982
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 3 cut(s) 563, 983, 1106
BslI CCNNNNNNNGG 1 cut(s) 1133
BsmAI GTCTC 2 cut(s) 921, 939
BsmBI CGTCTC 1 cut(s) 939
BsmI GAATGC 2 cut(s) 538, 812
BsnI GGCC 5 cut(s) 202, 299, 371, 490, 1126
Bsp119I TTCGAA 2 cut(s) 636, 1001
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
Bsp19I CCATGG 2 cut(s) 485, 591
BspACI CCGC 7 cut(s) 231, 233, 236, 296, 482, 1179, 1188
BspANI GGCC 5 cut(s) 202, 299, 371, 490, 1126
BspCNI CTCAG 5 cut(s) 45, 60, 196, 1134, 1234
BspFNI CGCG 2 cut(s) 233, 1188
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 2 cut(s) 636, 1001
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 5 cut(s) 353, 526, 690, 1014, 1258
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 5 cut(s) 231, 300, 430, 485, 591
BssMI GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
BssT1I CCWWGG 4 cut(s) 300, 430, 485, 591
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 6 cut(s) 224, 388, 508, 621, 932, 1084
Bst6I CTCTTC 1 cut(s) 483
BstBI TTCGAA 2 cut(s) 636, 1001
BstC8I GCNNGC 5 cut(s) 164, 408, 459, 560, 745
BstDEI CTNAG 5 cut(s) 32, 68, 183, 1121, 1221
BstDSI CCRYGG 3 cut(s) 231, 485, 591
BstENI CCTNNNNNAGG 1 cut(s) 1131
BstF5I GGATG 4 cut(s) 601, 898, 1054, 1254
BstFNI CGCG 2 cut(s) 233, 1188
BstKTI GATC 6 cut(s) 99, 453, 601, 751, 886, 1099
BstMAI GTCTC 2 cut(s) 921, 939
BstMBI GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
BstMWI GCNNNNNNNGC 7 cut(s) 129, 184, 199, 245, 296, 555, 1185
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 371, 1105
BstSFI CTRYAG 1 cut(s) 1080
BstUI CGCG 2 cut(s) 233, 1188
BstV1I GCAGC 5 cut(s) 141, 144, 260, 397, 400
BstV2I GAAGAC 1 cut(s) 714
BsuRI GGCC 5 cut(s) 202, 299, 371, 490, 1126
BtgI CCRYGG 3 cut(s) 231, 485, 591
BtgZI GCGATG 2 cut(s) 138, 825
BtsCI GGATG 4 cut(s) 601, 898, 1054, 1254
BtsIMutI CAGTG 3 cut(s) 40, 229, 360
Cac8I GCNNGC 5 cut(s) 164, 408, 459, 560, 745
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 369, 489
Cfr42I CCGCGG 1 cut(s) 234
Csp6I GTAC 3 cut(s) 529, 687, 1017
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 3 cut(s) 486, 592, 727
CviQI GTAC 3 cut(s) 529, 687, 1017
DdeI CTNAG 5 cut(s) 32, 68, 183, 1121, 1221
DpnI GATC 6 cut(s) 98, 452, 600, 750, 885, 1098
DpnII GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EciI GGCGGA 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 4 cut(s) 300, 430, 485, 591
Eco147I AGGCCT 1 cut(s) 1126
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 1131
EcoRI GAATTC 2 cut(s) 815, 990
EcoRII CCWGG 1 cut(s) 371
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 4 cut(s) 300, 430, 485, 591
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 4 cut(s) 300, 430, 485, 591
Esp3I CGTCTC 1 cut(s) 939
FaeI CATG 3 cut(s) 489, 595, 730
FatI CATG 3 cut(s) 485, 591, 726
FauI CCCGC 1 cut(s) 1181
FbaI TGATCA 2 cut(s) 883, 1096
Fnu4HI GCNGC 8 cut(s) 130, 133, 234, 237, 249, 297, 411, 414
FokI GGATG 4 cut(s) 608, 905, 1041, 1241
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 8 cut(s) 130, 133, 234, 237, 249, 297, 411, 414
FspBI CTAG 1 cut(s) 1209
GluI GCNGC 8 cut(s) 130, 133, 234, 237, 249, 297, 411, 414
GsaI CCCAGC 1 cut(s) 495
GsuI CTGGAG 2 cut(s) 336, 1143
HaeIII GGCC 5 cut(s) 202, 299, 371, 490, 1126
HapII CCGG 3 cut(s) 563, 983, 1106
Hin1II CATG 3 cut(s) 489, 595, 730
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 6 cut(s) 7, 40, 154, 217, 227, 379
HpaII CCGG 3 cut(s) 563, 983, 1106
HphI GGTGA 7 cut(s) 496, 690, 972, 997, 1095, 1148, 1236
Hpy166II GTNNAC 5 cut(s) 511, 554, 687, 698, 1184
Hpy188I TCNGA 8 cut(s) 69, 101, 625, 721, 856, 877, 1030, 1224
Hpy188III TCNNGA 2 cut(s) 820, 935
Hpy8I GTNNAC 5 cut(s) 511, 554, 687, 698, 1184
Hpy99I CGWCG 1 cut(s) 920
HpyAV CCTTC 4 cut(s) 135, 141, 568, 615
HpyCH4III ACNGT 6 cut(s) 224, 388, 508, 621, 932, 1084
HpyCH4IV ACGT 2 cut(s) 340, 918
HpyCH4V TGCA 6 cut(s) 319, 358, 416, 461, 657, 1173
HpyF10VI GCNNNNNNNGC 7 cut(s) 129, 184, 199, 245, 296, 555, 1185
HpyF3I CTNAG 5 cut(s) 32, 68, 183, 1121, 1221
HpySE526I ACGT 2 cut(s) 340, 918
Hsp92II CATG 3 cut(s) 489, 595, 730
Ksp22I TGATCA 2 cut(s) 883, 1096
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
LmnI GCTCC 3 cut(s) 273, 565, 1168
Lsp1109I GCAGC 5 cut(s) 141, 144, 260, 397, 400
LweI GCATC 2 cut(s) 328, 1063
MaeI CTAG 1 cut(s) 1209
MaeII ACGT 2 cut(s) 340, 918
MaeIII GTNAC 5 cut(s) 37, 1084, 1101, 1204, 1242
MalI GATC 6 cut(s) 98, 452, 600, 750, 885, 1098
MboI GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
MfeI CAATTG 1 cut(s) 1070
MhlI GDGCHC 1 cut(s) 180
MlyI GAGTC 2 cut(s) 16, 34
MmeI TCCRAC 2 cut(s) 407, 757
MseI TTAA 2 cut(s) 423, 912
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 3 cut(s) 563, 983, 1106
MspR9I CCNGG 2 cut(s) 373, 1107
MunI CAATTG 1 cut(s) 1070
Mva1269I GAATGC 2 cut(s) 538, 812
MvaI CCWGG 1 cut(s) 373
MvnI CGCG 2 cut(s) 233, 1188
MwoI GCNNNNNNNGC 7 cut(s) 129, 184, 199, 245, 296, 555, 1185
NciI CCSGG 1 cut(s) 1107
NcoI CCATGG 2 cut(s) 485, 591
NdeII GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
NlaIII CATG 3 cut(s) 489, 595, 730
NmuCI GTSAC 3 cut(s) 37, 1101, 1242
NspV TTCGAA 2 cut(s) 636, 1001
PceI AGGCCT 1 cut(s) 1126
PcsI WCGNNNNNNNCGW 1 cut(s) 633
PctI GAATGC 2 cut(s) 538, 812
PfeI GAWTC 4 cut(s) 154, 217, 227, 379
PflFI GACNNNGTC 2 cut(s) 43, 1240
PinAI ACCGGT 1 cut(s) 982
PkrI GCNGC 8 cut(s) 131, 134, 235, 238, 250, 298, 412, 415
PleI GAGTC 2 cut(s) 15, 34
PpsI GAGTC 2 cut(s) 15, 34
PsiI TTATAA 2 cut(s) 863, 974
Psp124BI GAGCTC 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 371
PspPI GGNCC 2 cut(s) 369, 489
PsrI GAACNNNNNNTAC 2 cut(s) 679, 711
PsyI GACNNNGTC 2 cut(s) 43, 1240
RsaI GTAC 3 cut(s) 530, 688, 1018
RsaNI GTAC 3 cut(s) 529, 687, 1017
SacI GAGCTC 1 cut(s) 180
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 423, 912
SatI GCNGC 8 cut(s) 130, 133, 234, 237, 249, 297, 411, 414
Sau3AI GATC 6 cut(s) 96, 450, 598, 748, 883, 1096
Sau96I GGNCC 2 cut(s) 369, 489
ScaI AGTACT 1 cut(s) 1018
SchI GAGTC 2 cut(s) 16, 34
ScrFI CCNGG 2 cut(s) 373, 1107
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 2 cut(s) 328, 1063
SfcI CTRYAG 1 cut(s) 1080
Sfr303I CCGCGG 1 cut(s) 234
SfuI TTCGAA 2 cut(s) 636, 1001
SgrAI CRCCGGYG 1 cut(s) 982
SgrBI CCGCGG 1 cut(s) 234
SpeI ACTAGT 1 cut(s) 1208
SseBI AGGCCT 1 cut(s) 1126
SsiI CCGC 7 cut(s) 231, 233, 236, 296, 482, 1179, 1188
SspMI CTAG 1 cut(s) 1209
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 1126
StyD4I CCNGG 2 cut(s) 371, 1105
StyI CCWWGG 4 cut(s) 300, 430, 485, 591
TaaI ACNGT 6 cut(s) 224, 388, 508, 621, 932, 1084
TaiI ACGT 2 cut(s) 343, 921
TaqI TCGA 4 cut(s) 152, 521, 636, 1001
TatI WGTACW 2 cut(s) 528, 1016
TauI GCSGC 3 cut(s) 236, 239, 299
TfiI GAWTC 4 cut(s) 154, 217, 227, 379
Tru1I TTAA 2 cut(s) 423, 912
Tru9I TTAA 2 cut(s) 423, 912
TscAI CASTG 3 cut(s) 40, 229, 360
TseFI GTSAC 3 cut(s) 37, 1101, 1242
TseI GCWGC 5 cut(s) 129, 132, 248, 410, 413
Tsp45I GTSAC 3 cut(s) 37, 1101, 1242
TspDTI ATGAA 8 cut(s) 587, 657, 675, 690, 813, 828, 857, 1243
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 3 cut(s) 40, 229, 360
Tth111I GACNNNGTC 2 cut(s) 43, 1240
XagI CCTNNNNNAGG 1 cut(s) 1131
XapI RAATTY 3 cut(s) 815, 990, 1249
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XspI CTAG 1 cut(s) 1209
ZrmI AGTACT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.