Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G30350 AT2G30350 |
| fragaria_vesca | FvH4_3g40230 FvH4_3g40230 |
| malus_domestica | MD03G1055200.v1.1 MD11G1056400.v1.1 |
| prunus_persica | Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1 |
| pyrus_communis | pycom03g04370 pycom11g04670 |
| rosa_chinensis | RchiOBHm_Chr5g0072441 |
| rosa_laevigata | RLG00000036299 |
| rosa_multiflora | Rmu_sc0008676.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00008770 |
| rosa_rugosa | Rorug05G0418300 |
| rosa_samantha | Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900 |
| rosa_wichuraiana | Rw5G044080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 863, 974 |
| AccII | CGCG | 2 cut(s) | 233, 1188 |
| AciI | CCGC | 7 cut(s) | 231, 233, 236, 296, 482, 1179, 1188 |
| AclI | AACGTT | 1 cut(s) | 340 |
| AclWI | GGATC | 1 cut(s) | 104 |
| AcsI | RAATTY | 3 cut(s) | 815, 990, 1249 |
| AfaI | GTAC | 3 cut(s) | 530, 688, 1018 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1133 |
| AgeI | ACCGGT | 1 cut(s) | 982 |
| AgsI | TTSAA | 4 cut(s) | 22, 365, 499, 1046 |
| AhlI | ACTAGT | 1 cut(s) | 1208 |
| AjnI | CCWGG | 1 cut(s) | 371 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 284, 316, 326, 358 |
| AluBI | AGCT | 5 cut(s) | 178, 276, 457, 495, 1163 |
| AluI | AGCT | 5 cut(s) | 178, 276, 457, 495, 1163 |
| Alw21I | GWGCWC | 1 cut(s) | 180 |
| Alw26I | GTCTC | 2 cut(s) | 921, 939 |
| AlwI | GGATC | 1 cut(s) | 104 |
| AoxI | GGCC | 5 cut(s) | 200, 297, 369, 488, 1124 |
| ApeKI | GCWGC | 5 cut(s) | 129, 132, 248, 410, 413 |
| ApoI | RAATTY | 3 cut(s) | 815, 990, 1249 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 617, 649 |
| AsiGI | ACCGGT | 1 cut(s) | 982 |
| AspS9I | GGNCC | 2 cut(s) | 369, 489 |
| AsuC2I | CCSGG | 1 cut(s) | 1107 |
| AsuHPI | GGTGA | 7 cut(s) | 496, 690, 972, 997, 1095, 1148, 1236 |
| AsuII | TTCGAA | 2 cut(s) | 636, 1001 |
| BanII | GRGCYC | 1 cut(s) | 180 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1009, 1041 |
| BbsI | GAAGAC | 1 cut(s) | 714 |
| Bbv12I | GWGCWC | 1 cut(s) | 180 |
| BbvI | GCAGC | 5 cut(s) | 141, 144, 260, 397, 400 |
| BccI | CCATC | 3 cut(s) | 119, 302, 1003 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BciT130I | CCWGG | 1 cut(s) | 373 |
| BclI | TGATCA | 2 cut(s) | 883, 1096 |
| BcnI | CCSGG | 1 cut(s) | 1107 |
| BcoDI | GTCTC | 2 cut(s) | 921, 939 |
| BcuI | ACTAGT | 1 cut(s) | 1208 |
| BfaI | CTAG | 1 cut(s) | 1209 |
| BfmI | CTRYAG | 1 cut(s) | 1080 |
| BisI | GCNGC | 8 cut(s) | 130, 133, 234, 237, 249, 297, 411, 414 |
| BlsI | GCNGC | 8 cut(s) | 131, 134, 235, 238, 250, 298, 412, 415 |
| BmcAI | AGTACT | 1 cut(s) | 1018 |
| Bme1390I | CCNGG | 2 cut(s) | 373, 1107 |
| BmgT120I | GGNCC | 2 cut(s) | 369, 489 |
| BmrFI | CCNGG | 2 cut(s) | 373, 1107 |
| BmsI | GCATC | 2 cut(s) | 328, 1063 |
| BpiI | GAAGAC | 1 cut(s) | 714 |
| BpmI | CTGGAG | 2 cut(s) | 336, 1143 |
| Bpu14I | TTCGAA | 2 cut(s) | 636, 1001 |
| BpuMI | CCSGG | 1 cut(s) | 1107 |
| BsaJI | CCNNGG | 5 cut(s) | 231, 300, 430, 485, 591 |
| BsaWI | WCCGGW | 1 cut(s) | 982 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 426, 456, 1147, 1177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1133 |
| Bse118I | RCCGGY | 1 cut(s) | 982 |
| Bse1I | ACTGG | 5 cut(s) | 353, 526, 690, 1014, 1258 |
| Bse3DI | GCAATG | 1 cut(s) | 664 |
| BseBI | CCWGG | 1 cut(s) | 373 |
| BseDI | CCNNGG | 5 cut(s) | 231, 300, 430, 485, 591 |
| BseGI | GGATG | 4 cut(s) | 601, 898, 1054, 1254 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1133 |
| BseMI | GCAATG | 1 cut(s) | 664 |
| BseMII | CTCAG | 5 cut(s) | 46, 59, 197, 1135, 1235 |
| BseNI | ACTGG | 5 cut(s) | 353, 526, 690, 1014, 1258 |
| BseXI | GCAGC | 5 cut(s) | 141, 144, 260, 397, 400 |
| BseYI | CCCAGC | 1 cut(s) | 491 |
| BsgI | GTGCAG | 1 cut(s) | 377 |
| Bsh1236I | CGCG | 2 cut(s) | 233, 1188 |
| BshFI | GGCC | 5 cut(s) | 202, 299, 371, 490, 1126 |
| BshTI | ACCGGT | 1 cut(s) | 982 |
| BsiHKAI | GWGCWC | 1 cut(s) | 180 |
| BsiSI | CCGG | 3 cut(s) | 563, 983, 1106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1133 |
| BsmAI | GTCTC | 2 cut(s) | 921, 939 |
| BsmBI | CGTCTC | 1 cut(s) | 939 |
| BsmI | GAATGC | 2 cut(s) | 538, 812 |
| BsnI | GGCC | 5 cut(s) | 202, 299, 371, 490, 1126 |
| Bsp119I | TTCGAA | 2 cut(s) | 636, 1001 |
| Bsp1286I | GDGCHC | 1 cut(s) | 180 |
| Bsp143I | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| Bsp19I | CCATGG | 2 cut(s) | 485, 591 |
| BspACI | CCGC | 7 cut(s) | 231, 233, 236, 296, 482, 1179, 1188 |
| BspANI | GGCC | 5 cut(s) | 202, 299, 371, 490, 1126 |
| BspCNI | CTCAG | 5 cut(s) | 45, 60, 196, 1134, 1234 |
| BspFNI | CGCG | 2 cut(s) | 233, 1188 |
| BspPI | GGATC | 1 cut(s) | 104 |
| BspT104I | TTCGAA | 2 cut(s) | 636, 1001 |
| BsrDI | GCAATG | 1 cut(s) | 664 |
| BsrFI | RCCGGY | 1 cut(s) | 982 |
| BsrI | ACTGG | 5 cut(s) | 353, 526, 690, 1014, 1258 |
| BssAI | RCCGGY | 1 cut(s) | 982 |
| BssECI | CCNNGG | 5 cut(s) | 231, 300, 430, 485, 591 |
| BssMI | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| BssT1I | CCWWGG | 4 cut(s) | 300, 430, 485, 591 |
| Bst2UI | CCWGG | 1 cut(s) | 373 |
| Bst4CI | ACNGT | 6 cut(s) | 224, 388, 508, 621, 932, 1084 |
| Bst6I | CTCTTC | 1 cut(s) | 483 |
| BstBI | TTCGAA | 2 cut(s) | 636, 1001 |
| BstC8I | GCNNGC | 5 cut(s) | 164, 408, 459, 560, 745 |
| BstDEI | CTNAG | 5 cut(s) | 32, 68, 183, 1121, 1221 |
| BstDSI | CCRYGG | 3 cut(s) | 231, 485, 591 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| BstF5I | GGATG | 4 cut(s) | 601, 898, 1054, 1254 |
| BstFNI | CGCG | 2 cut(s) | 233, 1188 |
| BstKTI | GATC | 6 cut(s) | 99, 453, 601, 751, 886, 1099 |
| BstMAI | GTCTC | 2 cut(s) | 921, 939 |
| BstMBI | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 129, 184, 199, 245, 296, 555, 1185 |
| BstNI | CCWGG | 1 cut(s) | 373 |
| BstSCI | CCNGG | 2 cut(s) | 371, 1105 |
| BstSFI | CTRYAG | 1 cut(s) | 1080 |
| BstUI | CGCG | 2 cut(s) | 233, 1188 |
| BstV1I | GCAGC | 5 cut(s) | 141, 144, 260, 397, 400 |
| BstV2I | GAAGAC | 1 cut(s) | 714 |
| BsuRI | GGCC | 5 cut(s) | 202, 299, 371, 490, 1126 |
| BtgI | CCRYGG | 3 cut(s) | 231, 485, 591 |
| BtgZI | GCGATG | 2 cut(s) | 138, 825 |
| BtsCI | GGATG | 4 cut(s) | 601, 898, 1054, 1254 |
| BtsIMutI | CAGTG | 3 cut(s) | 40, 229, 360 |
| Cac8I | GCNNGC | 5 cut(s) | 164, 408, 459, 560, 745 |
| Cfr10I | RCCGGY | 1 cut(s) | 982 |
| Cfr13I | GGNCC | 2 cut(s) | 369, 489 |
| Cfr42I | CCGCGG | 1 cut(s) | 234 |
| Csp6I | GTAC | 3 cut(s) | 529, 687, 1017 |
| CspAI | ACCGGT | 1 cut(s) | 982 |
| CviAII | CATG | 3 cut(s) | 486, 592, 727 |
| CviQI | GTAC | 3 cut(s) | 529, 687, 1017 |
| DdeI | CTNAG | 5 cut(s) | 32, 68, 183, 1121, 1221 |
| DpnI | GATC | 6 cut(s) | 98, 452, 600, 750, 885, 1098 |
| DpnII | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| DraI | TTTAAA | 1 cut(s) | 424 |
| Eam1104I | CTCTTC | 1 cut(s) | 483 |
| EarI | CTCTTC | 1 cut(s) | 483 |
| EciI | GGCGGA | 1 cut(s) | 471 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 4 cut(s) | 300, 430, 485, 591 |
| Eco147I | AGGCCT | 1 cut(s) | 1126 |
| Eco24I | GRGCYC | 1 cut(s) | 180 |
| Eco32I | GATATC | 1 cut(s) | 763 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| EcoRI | GAATTC | 2 cut(s) | 815, 990 |
| EcoRII | CCWGG | 1 cut(s) | 371 |
| EcoRV | GATATC | 1 cut(s) | 763 |
| EcoT14I | CCWWGG | 4 cut(s) | 300, 430, 485, 591 |
| EcoT38I | GRGCYC | 1 cut(s) | 180 |
| ErhI | CCWWGG | 4 cut(s) | 300, 430, 485, 591 |
| Esp3I | CGTCTC | 1 cut(s) | 939 |
| FaeI | CATG | 3 cut(s) | 489, 595, 730 |
| FatI | CATG | 3 cut(s) | 485, 591, 726 |
| FauI | CCCGC | 1 cut(s) | 1181 |
| FbaI | TGATCA | 2 cut(s) | 883, 1096 |
| Fnu4HI | GCNGC | 8 cut(s) | 130, 133, 234, 237, 249, 297, 411, 414 |
| FokI | GGATG | 4 cut(s) | 608, 905, 1041, 1241 |
| FriOI | GRGCYC | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 8 cut(s) | 130, 133, 234, 237, 249, 297, 411, 414 |
| FspBI | CTAG | 1 cut(s) | 1209 |
| GluI | GCNGC | 8 cut(s) | 130, 133, 234, 237, 249, 297, 411, 414 |
| GsaI | CCCAGC | 1 cut(s) | 495 |
| GsuI | CTGGAG | 2 cut(s) | 336, 1143 |
| HaeIII | GGCC | 5 cut(s) | 202, 299, 371, 490, 1126 |
| HapII | CCGG | 3 cut(s) | 563, 983, 1106 |
| Hin1II | CATG | 3 cut(s) | 489, 595, 730 |
| HindIII | AAGCTT | 1 cut(s) | 455 |
| HinfI | GANTC | 6 cut(s) | 7, 40, 154, 217, 227, 379 |
| HpaII | CCGG | 3 cut(s) | 563, 983, 1106 |
| HphI | GGTGA | 7 cut(s) | 496, 690, 972, 997, 1095, 1148, 1236 |
| Hpy166II | GTNNAC | 5 cut(s) | 511, 554, 687, 698, 1184 |
| Hpy188I | TCNGA | 8 cut(s) | 69, 101, 625, 721, 856, 877, 1030, 1224 |
| Hpy188III | TCNNGA | 2 cut(s) | 820, 935 |
| Hpy8I | GTNNAC | 5 cut(s) | 511, 554, 687, 698, 1184 |
| Hpy99I | CGWCG | 1 cut(s) | 920 |
| HpyAV | CCTTC | 4 cut(s) | 135, 141, 568, 615 |
| HpyCH4III | ACNGT | 6 cut(s) | 224, 388, 508, 621, 932, 1084 |
| HpyCH4IV | ACGT | 2 cut(s) | 340, 918 |
| HpyCH4V | TGCA | 6 cut(s) | 319, 358, 416, 461, 657, 1173 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 129, 184, 199, 245, 296, 555, 1185 |
| HpyF3I | CTNAG | 5 cut(s) | 32, 68, 183, 1121, 1221 |
| HpySE526I | ACGT | 2 cut(s) | 340, 918 |
| Hsp92II | CATG | 3 cut(s) | 489, 595, 730 |
| Ksp22I | TGATCA | 2 cut(s) | 883, 1096 |
| KspI | CCGCGG | 1 cut(s) | 234 |
| Kzo9I | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| LmnI | GCTCC | 3 cut(s) | 273, 565, 1168 |
| Lsp1109I | GCAGC | 5 cut(s) | 141, 144, 260, 397, 400 |
| LweI | GCATC | 2 cut(s) | 328, 1063 |
| MaeI | CTAG | 1 cut(s) | 1209 |
| MaeII | ACGT | 2 cut(s) | 340, 918 |
| MaeIII | GTNAC | 5 cut(s) | 37, 1084, 1101, 1204, 1242 |
| MalI | GATC | 6 cut(s) | 98, 452, 600, 750, 885, 1098 |
| MboI | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| MfeI | CAATTG | 1 cut(s) | 1070 |
| MhlI | GDGCHC | 1 cut(s) | 180 |
| MlyI | GAGTC | 2 cut(s) | 16, 34 |
| MmeI | TCCRAC | 2 cut(s) | 407, 757 |
| MseI | TTAA | 2 cut(s) | 423, 912 |
| MspA1I | CMGCKG | 1 cut(s) | 233 |
| MspI | CCGG | 3 cut(s) | 563, 983, 1106 |
| MspR9I | CCNGG | 2 cut(s) | 373, 1107 |
| MunI | CAATTG | 1 cut(s) | 1070 |
| Mva1269I | GAATGC | 2 cut(s) | 538, 812 |
| MvaI | CCWGG | 1 cut(s) | 373 |
| MvnI | CGCG | 2 cut(s) | 233, 1188 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 129, 184, 199, 245, 296, 555, 1185 |
| NciI | CCSGG | 1 cut(s) | 1107 |
| NcoI | CCATGG | 2 cut(s) | 485, 591 |
| NdeII | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| NlaIII | CATG | 3 cut(s) | 489, 595, 730 |
| NmuCI | GTSAC | 3 cut(s) | 37, 1101, 1242 |
| NspV | TTCGAA | 2 cut(s) | 636, 1001 |
| PceI | AGGCCT | 1 cut(s) | 1126 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 633 |
| PctI | GAATGC | 2 cut(s) | 538, 812 |
| PfeI | GAWTC | 4 cut(s) | 154, 217, 227, 379 |
| PflFI | GACNNNGTC | 2 cut(s) | 43, 1240 |
| PinAI | ACCGGT | 1 cut(s) | 982 |
| PkrI | GCNGC | 8 cut(s) | 131, 134, 235, 238, 250, 298, 412, 415 |
| PleI | GAGTC | 2 cut(s) | 15, 34 |
| PpsI | GAGTC | 2 cut(s) | 15, 34 |
| PsiI | TTATAA | 2 cut(s) | 863, 974 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp1406I | AACGTT | 1 cut(s) | 340 |
| Psp6I | CCWGG | 1 cut(s) | 371 |
| PspFI | CCCAGC | 1 cut(s) | 491 |
| PspGI | CCWGG | 1 cut(s) | 371 |
| PspPI | GGNCC | 2 cut(s) | 369, 489 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 679, 711 |
| PsyI | GACNNNGTC | 2 cut(s) | 43, 1240 |
| RsaI | GTAC | 3 cut(s) | 530, 688, 1018 |
| RsaNI | GTAC | 3 cut(s) | 529, 687, 1017 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SacII | CCGCGG | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 423, 912 |
| SatI | GCNGC | 8 cut(s) | 130, 133, 234, 237, 249, 297, 411, 414 |
| Sau3AI | GATC | 6 cut(s) | 96, 450, 598, 748, 883, 1096 |
| Sau96I | GGNCC | 2 cut(s) | 369, 489 |
| ScaI | AGTACT | 1 cut(s) | 1018 |
| SchI | GAGTC | 2 cut(s) | 16, 34 |
| ScrFI | CCNGG | 2 cut(s) | 373, 1107 |
| SduI | GDGCHC | 1 cut(s) | 180 |
| SfaNI | GCATC | 2 cut(s) | 328, 1063 |
| SfcI | CTRYAG | 1 cut(s) | 1080 |
| Sfr303I | CCGCGG | 1 cut(s) | 234 |
| SfuI | TTCGAA | 2 cut(s) | 636, 1001 |
| SgrAI | CRCCGGYG | 1 cut(s) | 982 |
| SgrBI | CCGCGG | 1 cut(s) | 234 |
| SpeI | ACTAGT | 1 cut(s) | 1208 |
| SseBI | AGGCCT | 1 cut(s) | 1126 |
| SsiI | CCGC | 7 cut(s) | 231, 233, 236, 296, 482, 1179, 1188 |
| SspMI | CTAG | 1 cut(s) | 1209 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StuI | AGGCCT | 1 cut(s) | 1126 |
| StyD4I | CCNGG | 2 cut(s) | 371, 1105 |
| StyI | CCWWGG | 4 cut(s) | 300, 430, 485, 591 |
| TaaI | ACNGT | 6 cut(s) | 224, 388, 508, 621, 932, 1084 |
| TaiI | ACGT | 2 cut(s) | 343, 921 |
| TaqI | TCGA | 4 cut(s) | 152, 521, 636, 1001 |
| TatI | WGTACW | 2 cut(s) | 528, 1016 |
| TauI | GCSGC | 3 cut(s) | 236, 239, 299 |
| TfiI | GAWTC | 4 cut(s) | 154, 217, 227, 379 |
| Tru1I | TTAA | 2 cut(s) | 423, 912 |
| Tru9I | TTAA | 2 cut(s) | 423, 912 |
| TscAI | CASTG | 3 cut(s) | 40, 229, 360 |
| TseFI | GTSAC | 3 cut(s) | 37, 1101, 1242 |
| TseI | GCWGC | 5 cut(s) | 129, 132, 248, 410, 413 |
| Tsp45I | GTSAC | 3 cut(s) | 37, 1101, 1242 |
| TspDTI | ATGAA | 8 cut(s) | 587, 657, 675, 690, 813, 828, 857, 1243 |
| TspGWI | ACGGA | 1 cut(s) | 271 |
| TspRI | CASTG | 3 cut(s) | 40, 229, 360 |
| Tth111I | GACNNNGTC | 2 cut(s) | 43, 1240 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1131 |
| XapI | RAATTY | 3 cut(s) | 815, 990, 1249 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 210 |
| XspI | CTAG | 1 cut(s) | 1209 |
| ZrmI | AGTACT | 1 cut(s) | 1018 |