Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

33997184 .. 33999439

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40230.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAGGCAGCAGAGAAGCAAGAACCCATCAGAAACCCTAACCATGCCAGAAGAAGAAGAAGGAGGCCGATTCTTCGCTTGCTATCTTCTGACGTCACGCTGCCCCCGTTACAAGGGCCACACCTATATTGGATTCACGGTGAATCCACGGCGGAGGATACGGCAGCACAATGGGGAAATTGGGCGAGGTGCTTGGAGGACCAAGAAGAAGCGGCCGTGGGAGATGGCCTTGTGCATTTATGGCTTCCCAACTAACACTTCAGCTCTCCAGTTTGAATGGGCCTGGCAGAACCCATATGTATCAAAGGCAGTAAGGAAAGCTGCAGCAAACTTTAAATCCCTCGGAGGATTTGCCAATAAGATCAAACTTGCATACACAATGCTCACCTTACCGCCTTGGGAGAGCTTGAACCTCACCGTGAACTTTTTTTCAACTGAGCATACCAAGCATGCTGCTGGTTGTCCACGCCTCCCGGAACAGATGAAGGTTAAAATTTGCCCCATGGATGAGCTTCCTTCATGTATATCAGATGATGTTTCGGACAATGAAGATGAGTGGTATAATGAAAAAGAAAATGATGAAACTATGAATATCAGTACATTATCAGAACCTGTAGTTCCTAATTCGGCAGATGATCAGCATAATGATATTGGCAATAGAAGTAACGAAGTCTATGCACAGGATAAAGAAGTAGGAGAAGATGAGTGGTATAATGATAAGGTATCTGATGAAGCTATGAACAGTGGTCTATCATGGGAAGAAACATTATCAAATTTTATGGTTCGTGATTCAGCAAATGACCTGGAAATGGATACTGGCAATACATCTAGTCAAGTTTCTAGATGCAATGAAGAAGTACAAGAAGATATCACTGGGGAATTTATCACATCACCACTGAGAATGCCATACTCCAATGTCATTCCATCATTTGATACAGAAGCAAGTAAGAATATAGGTTTGTTTGATGACAGTACTGTCGAGTTGGATCGACCTGCAAGGAAACAATCACCAGCTATAATAGTTGCGGATGAGGAACAGTCACCAAGAAATAGTTATCTCAGGCCTTGTGATTCTGAGGTAGTGGATTTGATAACTCCATCACCATTGTGCAGAAATGGTTTATGTGGCAAGAAGAGTAGAGTTCCTACATCTTATCCTGAAATTATCGACCTGACCAAGTCTCCTAATTTCATCCAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

401

Amino Acids

45.45

Weight (kDa)

4.95

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	974
AatII	GACGTC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	1000
AciI	CCGC	4 cut(s)	151, 211, 392, 1025
AclWI	GGATC	1 cut(s)	993
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	3 cut(s)	492, 772, 878
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	3 cut(s)	598, 858, 973
AfiI	CCNNNNNNNGG	2 cut(s)	112, 808
AgsI	TTSAA	3 cut(s)	275, 409, 432
AjnI	CCWGG	2 cut(s)	281, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AleI	CACNNNNGTG	1 cut(s)	1105
AluBI	AGCT	6 cut(s)	263, 320, 405, 511, 734, 1013
AluI	AGCT	6 cut(s)	263, 320, 405, 511, 734, 1013
Alw26I	GTCTC	1 cut(s)	1185
AlwI	GGATC	1 cut(s)	993
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	6 cut(s)	64, 115, 212, 225, 279, 1061
ApeKI	GCWGC	6 cut(s)	7, 99, 163, 320, 323, 452
ApoI	RAATTY	3 cut(s)	492, 772, 878
AspS9I	GGNCC	3 cut(s)	115, 198, 279
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	7 cut(s)	151, 376, 406, 882, 999, 1032, 1092
AvaII	GGWCC	1 cut(s)	198
BbvI	GCAGC	6 cut(s)	19, 86, 175, 307, 335, 439
BccI	CCATC	4 cut(s)	34, 217, 931, 1105
BceAI	ACGGC	3 cut(s)	164, 176, 199
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	2 cut(s)	283, 803
BciVI	GTATCC	2 cut(s)	150, 805
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	1185
BfaI	CTAG	2 cut(s)	828, 840
BfmI	CTRYAG	2 cut(s)	321, 612
BfuAI	ACCTGC	1 cut(s)	1000
BfuI	GTATCC	2 cut(s)	150, 805
BisI	GCNGC	7 cut(s)	8, 100, 164, 212, 321, 324, 453
BlsI	GCNGC	7 cut(s)	9, 101, 165, 213, 322, 325, 454
BmcAI	AGTACT	1 cut(s)	973
Bme1390I	CCNGG	3 cut(s)	283, 473, 803
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	115, 198, 279
BmrFI	CCNGG	3 cut(s)	283, 473, 803
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	882
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	5 cut(s)	146, 215, 340, 395, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	1165, 1195
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 808
Bse1I	ACTGG	4 cut(s)	268, 820, 877, 1195
Bse3DI	GCAATG	1 cut(s)	853
BseBI	CCWGG	2 cut(s)	283, 803
BseDI	CCNNGG	5 cut(s)	146, 215, 340, 395, 501
BseGI	GGATG	3 cut(s)	511, 1033, 1191
BseLI	CCNNNNNNNGG	2 cut(s)	112, 808
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	4 cut(s)	426, 887, 1065, 1072
BseNI	ACTGG	4 cut(s)	268, 820, 877, 1195
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	6 cut(s)	19, 86, 175, 307, 335, 439
BsgI	GTGCAG	1 cut(s)	1129
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	6 cut(s)	66, 117, 214, 227, 281, 1063
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	112, 808
BsmAI	GTCTC	1 cut(s)	1185
BsmI	GAATGC	1 cut(s)	906
BsnI	GGCC	6 cut(s)	66, 117, 214, 227, 281, 1063
Bsp143I	GATC	3 cut(s)	360, 634, 985
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	4 cut(s)	151, 211, 392, 1025
BspANI	GGCC	6 cut(s)	66, 117, 214, 227, 281, 1063
BspCNI	CTCAG	4 cut(s)	427, 888, 1066, 1071
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	1000
BspPI	GGATC	1 cut(s)	993
BsrDI	GCAATG	1 cut(s)	853
BsrI	ACTGG	4 cut(s)	268, 820, 877, 1195
BssECI	CCNNGG	5 cut(s)	146, 215, 340, 395, 501
BssMI	GATC	3 cut(s)	360, 634, 985
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	2 cut(s)	395, 501
Bst2UI	CCWGG	2 cut(s)	283, 803
Bst4CI	ACNGT	6 cut(s)	139, 418, 743, 971, 976, 1038
Bst6I	CTCTTC	1 cut(s)	1127
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	79, 450
BstDEI	CTNAG	4 cut(s)	435, 896, 1058, 1074
BstDSI	CCRYGG	3 cut(s)	146, 215, 501
BstF5I	GGATG	3 cut(s)	511, 1033, 1191
BstKTI	GATC	3 cut(s)	363, 637, 988
BstMAI	GTCTC	1 cut(s)	1185
BstMBI	GATC	3 cut(s)	360, 634, 985
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 445
BstNI	CCWGG	2 cut(s)	283, 803
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	3 cut(s)	281, 471, 801
BstSFI	CTRYAG	2 cut(s)	321, 612
BstV1I	GCAGC	6 cut(s)	19, 86, 175, 307, 335, 439
BstZI	CGGCCG	1 cut(s)	212
BsuI	GTATCC	2 cut(s)	150, 805
BsuRI	GGCC	6 cut(s)	66, 117, 214, 227, 281, 1063
BtgI	CCRYGG	3 cut(s)	146, 215, 501
BtsCI	GGATG	3 cut(s)	511, 1033, 1191
BtsIMutI	CAGTG	3 cut(s)	748, 870, 893
BveI	ACCTGC	1 cut(s)	1000
Cac8I	GCNNGC	2 cut(s)	79, 450
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	3 cut(s)	115, 198, 279
Csp6I	GTAC	3 cut(s)	597, 857, 972
CviAII	CATG	5 cut(s)	43, 449, 502, 519, 753
CviQI	GTAC	3 cut(s)	597, 857, 972
DdeI	CTNAG	4 cut(s)	435, 896, 1058, 1074
DpnI	GATC	3 cut(s)	362, 636, 987
DpnII	GATC	3 cut(s)	360, 634, 985
DraI	TTTAAA	1 cut(s)	334
DrdI	GACNNNNNNGTC	1 cut(s)	974
DseDI	GACNNNNNNGTC	1 cut(s)	974
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	1127
EarI	CTCTTC	1 cut(s)	1127
EciI	GGCGGA	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	395, 501
Eco147I	AGGCCT	1 cut(s)	1063
Eco32I	GATATC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	281, 801
EcoRV	GATATC	1 cut(s)	868
EcoT14I	CCWWGG	2 cut(s)	395, 501
ErhI	CCWWGG	2 cut(s)	395, 501
FaeI	CATG	5 cut(s)	46, 452, 505, 522, 756
FatI	CATG	5 cut(s)	42, 448, 501, 518, 752
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	7 cut(s)	8, 100, 164, 212, 321, 324, 453
FokI	GGATG	3 cut(s)	518, 1040, 1178
Fsp4HI	GCNGC	7 cut(s)	8, 100, 164, 212, 321, 324, 453
FspBI	CTAG	2 cut(s)	828, 840
GluI	GCNGC	7 cut(s)	8, 100, 164, 212, 321, 324, 453
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	6 cut(s)	66, 117, 214, 227, 281, 1063
HapII	CCGG	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	5 cut(s)	46, 452, 505, 522, 756
HinfI	GANTC	5 cut(s)	69, 132, 142, 788, 1070
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	7 cut(s)	151, 376, 406, 882, 999, 1032, 1092
Hpy166II	GTNNAC	2 cut(s)	421, 464
Hpy188I	TCNGA	8 cut(s)	31, 90, 344, 529, 541, 607, 727, 1075
Hpy188III	TCNNGA	3 cut(s)	785, 840, 1157
Hpy8I	GTNNAC	2 cut(s)	421, 464
HpyAV	CCTTC	3 cut(s)	53, 478, 525
HpyCH4III	ACNGT	6 cut(s)	139, 418, 743, 971, 976, 1038
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	7 cut(s)	234, 323, 371, 677, 846, 995, 1110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 445
HpyF3I	CTNAG	4 cut(s)	435, 896, 1058, 1074
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	5 cut(s)	46, 452, 505, 522, 756
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	3 cut(s)	360, 634, 985
Lsp1109I	GCAGC	6 cut(s)	19, 86, 175, 307, 335, 439
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	2 cut(s)	828, 840
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	4 cut(s)	93, 107, 662, 1038
MalI	GATC	3 cut(s)	362, 636, 987
MboI	GATC	3 cut(s)	360, 634, 985
MluCI	AATT	7 cut(s)	177, 492, 622, 772, 878, 1161, 1186
MmeI	TCCRAC	1 cut(s)	963
MseI	TTAA	2 cut(s)	333, 489
MslI	CAYNNNNRTG	1 cut(s)	1105
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	3 cut(s)	283, 473, 803
Mva1269I	GAATGC	1 cut(s)	906
MvaI	CCWGG	2 cut(s)	283, 803
MwoI	GCNNNNNNNGC	2 cut(s)	240, 445
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	360, 634, 985
NlaIII	CATG	5 cut(s)	46, 452, 505, 522, 756
NmuCI	GTSAC	2 cut(s)	93, 1038
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	1105
PaeI	GCATGC	1 cut(s)	452
PceI	AGGCCT	1 cut(s)	1063
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	906
PfeI	GAWTC	5 cut(s)	69, 132, 142, 788, 1070
PflFI	GACNNNGTC	1 cut(s)	1177
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	7 cut(s)	9, 101, 165, 213, 322, 325, 454
Psp6I	CCWGG	2 cut(s)	281, 801
PspGI	CCWGG	2 cut(s)	281, 801
PspPI	GGNCC	3 cut(s)	115, 198, 279
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	611
PsyI	GACNNNGTC	1 cut(s)	1177
RsaI	GTAC	3 cut(s)	598, 858, 973
RsaNI	GTAC	3 cut(s)	597, 857, 972
RseI	CAYNNNNRTG	1 cut(s)	1105
SaqAI	TTAA	2 cut(s)	333, 489
SatI	GCNGC	7 cut(s)	8, 100, 164, 212, 321, 324, 453
Sau3AI	GATC	3 cut(s)	360, 634, 985
Sau96I	GGNCC	3 cut(s)	115, 198, 279
ScaI	AGTACT	1 cut(s)	973
ScrFI	CCNGG	3 cut(s)	283, 473, 803
SfaNI	GCATC	1 cut(s)	833
SfcI	CTRYAG	2 cut(s)	321, 612
SinI	GGWCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	1105
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	7 cut(s)	177, 492, 622, 772, 878, 1161, 1186
SseBI	AGGCCT	1 cut(s)	1063
SsiI	CCGC	4 cut(s)	151, 211, 392, 1025
SspMI	CTAG	2 cut(s)	828, 840
StuI	AGGCCT	1 cut(s)	1063
StyD4I	CCNGG	3 cut(s)	281, 471, 801
StyI	CCWWGG	2 cut(s)	395, 501
TaaI	ACNGT	6 cut(s)	139, 418, 743, 971, 976, 1038
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	978, 988, 1167
TasI	AATT	7 cut(s)	177, 492, 622, 772, 878, 1161, 1186
TatI	WGTACW	3 cut(s)	596, 856, 971
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	5 cut(s)	69, 132, 142, 788, 1070
Tru1I	TTAA	2 cut(s)	333, 489
Tru9I	TTAA	2 cut(s)	333, 489
TscAI	CASTG	3 cut(s)	748, 877, 900
TseFI	GTSAC	2 cut(s)	93, 1038
TseI	GCWGC	6 cut(s)	7, 99, 163, 320, 323, 452
Tsp45I	GTSAC	2 cut(s)	93, 1038
TspRI	CASTG	3 cut(s)	748, 877, 900
Tth111I	GACNNNGTC	1 cut(s)	1177
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	3 cut(s)	492, 772, 878
XbaI	TCTAGA	1 cut(s)	839
XceI	RCATGY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XspI	CTAG	2 cut(s)	828, 840
ZraI	GACGTC	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.