Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Forward (+)

3178066 .. 3180606

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAGGCAGAGAAGAAAGATTGGATCAGAAATCCCAGAAAACCGAATCGGGGAGGAGAAAGAAGCAGAAGAAGGACGATTCTTCGCATGCTATCTGTTGACCTCTCGCAGCCCCCGCTACAAAGGCCACACCTATATTGGATTCACAGTGAACCCACGGCGTCGTATAAGACAGCACAATGGTGAAATAGGGCAAGGTGCTTGGAGAACGAAGCGGAAGCGTCCATGGGAGATGGTCTTGTGCATCTATGGTTTCCCAACTAACGTTTCTGCTCTCCAGTTTGAATGGGCATGGCAGAACCCAACTGTATCAAAGGCAGTTAGGCAGGCTGCTGCAAGCTTTAAATCCCTGGGAGGGCTTGCCAGCAAGATCAAACTTGCATACACCATGCTCACCCTCCCTCCTTGGCAGAGCTTGAACATCACTATAAACTTCTTTTCAACCCAGTACACCAAACATTCTGCTGGTTGTCCACGCCTTCCAGAACAGATGAAGGTCAAAGTCTGCTCCATGGATGAGCTTCCTTCATGTACTAAACTATCTGATGACCTTTTGGAAAATGAAGATGAGTGGTGTAATGAAGGGGAATTTGATGAAGATATGAATACCAGTACACTACACGATGAAACAATATCGGACTTCATGGGTCATAATTCAGCAGATGATCAGCAGAGTGATAGTGGCAATAGAATGAATGAAGTATACAGATGCAGTAAAGAAGTAGGAGAAGATGAGTGGTATAATGGAAGAGAATGTGATGAAGCTATGAATGATGGTACATTACAGGAAGAAACATCATCTGATCTTATAGTTCAAAGTTCAGCAGATGATCAGCAGGATAATACCGCCAAGACAAACAAAGCACATCAAGGCAGTCAAGAAGTAGGAGAGGATTGTACAGAGCAATTTGGTTTTATCGCATCGCCAGTGAGAACGCCATCTTCAAATGTCACCACCTCATTTGGCACAGAAGTAACTAAAGATATAGGATCTGCTGATGCCATTAGTGTTAAATTGGGCCAACCTGCAATGGAACAATTGACAACTATAGTTGCAGACCATCAGTCGCCCAGCAGAAGCTATCTCCGGCCTTGTGGAGCTGAGGTAATAGATTTGACAACCCCAGCTTCCCTATGCAGAAGCCATTTATGTGGAAAGAAGAGTAGAGTTGCTCCTGTTTATCCTAGGATTATTGACTTGACTAAGTCTCCCAATTTCATCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

410

Amino Acids

45.9

Weight (kDa)

5.37

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1033
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	3 cut(s)	115, 214, 846
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	2 cut(s)	31, 997
AcsI	RAATTY	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	5 cut(s)	449, 532, 613, 778, 898
AfiI	CCNNNNNNNGG	2 cut(s)	49, 354
AgsI	TTSAA	5 cut(s)	284, 418, 441, 815, 945
AhdI	GACNNNNNGTC	1 cut(s)	1063
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	7 cut(s)	339, 414, 520, 764, 1080, 1100, 1127
AluI	AGCT	7 cut(s)	339, 414, 520, 764, 1080, 1100, 1127
Alw26I	GTCTC	1 cut(s)	1212
AlwI	GGATC	2 cut(s)	31, 997
AoxI	GGCC	3 cut(s)	124, 1018, 1088
ApeKI	GCWGC	3 cut(s)	108, 329, 332
ApoI	RAATTY	1 cut(s)	587
AspA2I	CCTAGG	1 cut(s)	1184
AspS9I	GGNCC	1 cut(s)	1018
AsuHPI	GGTGA	3 cut(s)	194, 385, 943
AvrII	CCTAGG	1 cut(s)	1184
BbvCI	CCTCAGC	1 cut(s)	1101
BbvI	GCAGC	3 cut(s)	120, 316, 319
BccI	CCATC	4 cut(s)	226, 767, 946, 1068
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	2 cut(s)	664, 829
BcoDI	GTCTC	1 cut(s)	1212
BfaI	CTAG	1 cut(s)	1185
BfmI	CTRYAG	2 cut(s)	1047, 1226
BfuAI	ACCTGC	1 cut(s)	1033
BisI	GCNGC	3 cut(s)	109, 330, 333
BlnI	CCTAGG	1 cut(s)	1184
BlsI	GCNGC	3 cut(s)	110, 331, 334
Bme1390I	CCNGG	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	1063
BmgT120I	GGNCC	1 cut(s)	1018
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	4 cut(s)	252, 698, 929, 988
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	1101
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	7 cut(s)	155, 224, 348, 349, 404, 510, 1184
BsaXI	ACNNNNNCTCC	6 cut(s)	385, 415, 1089, 1119, 1192, 1222
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 354
Bse1I	ACTGG	4 cut(s)	277, 445, 609, 926
Bse3DI	GCAATG	1 cut(s)	1035
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	7 cut(s)	155, 224, 348, 349, 404, 510, 1184
BseGI	GGATG	2 cut(s)	520, 1218
BseLI	CCNNNNNNNGG	2 cut(s)	49, 354
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	1 cut(s)	1092
BseNI	ACTGG	4 cut(s)	277, 445, 609, 926
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	120, 316, 319
BseYI	CCCAGC	2 cut(s)	1070, 1123
BshFI	GGCC	3 cut(s)	126, 1020, 1090
BsiSI	CCGG	1 cut(s)	1087
BslI	CCNNNNNNNGG	2 cut(s)	49, 354
BsmAI	GTCTC	1 cut(s)	1212
BsnI	GGCC	3 cut(s)	126, 1020, 1090
Bsp1407I	TGTACA	1 cut(s)	896
Bsp143I	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
Bsp19I	CCATGG	2 cut(s)	224, 510
BspACI	CCGC	3 cut(s)	115, 214, 846
BspANI	GGCC	3 cut(s)	126, 1020, 1090
BspCNI	CTCAG	1 cut(s)	1093
BspMI	ACCTGC	1 cut(s)	1033
BspPI	GGATC	2 cut(s)	31, 997
BsrDI	GCAATG	1 cut(s)	1035
BsrGI	TGTACA	1 cut(s)	896
BsrI	ACTGG	4 cut(s)	277, 445, 609, 926
BssECI	CCNNGG	7 cut(s)	155, 224, 348, 349, 404, 510, 1184
BssMI	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
BssNAI	GTATAC	1 cut(s)	703
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	4 cut(s)	224, 404, 510, 1184
Bst1107I	GTATAC	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	148, 307
Bst6I	CTCTTC	2 cut(s)	742, 1154
BstACI	GRCGYC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	896
BstC8I	GCNNGC	5 cut(s)	88, 327, 337, 360, 364
BstDEI	CTNAG	2 cut(s)	1101, 1203
BstDSI	CCRYGG	3 cut(s)	155, 224, 510
BstF5I	GGATG	2 cut(s)	520, 1218
BstKTI	GATC	6 cut(s)	26, 372, 667, 805, 832, 992
BstMAI	GTCTC	1 cut(s)	1212
BstMBI	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 123
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	1047, 1226
BstV1I	GCAGC	3 cut(s)	120, 316, 319
BstX2I	RGATCY	1 cut(s)	989
BstXI	CCANNNNNNTGG	1 cut(s)	1151
BstYI	RGATCY	1 cut(s)	989
BstZ17I	GTATAC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	126, 1020, 1090
BtgI	CCRYGG	3 cut(s)	155, 224, 510
BtgZI	GCGATG	1 cut(s)	906
BtsCI	GGATG	2 cut(s)	520, 1218
BtsIMutI	CAGTG	2 cut(s)	153, 933
BveI	ACCTGC	1 cut(s)	1033
Cac8I	GCNNGC	5 cut(s)	88, 327, 337, 360, 364
Cfr13I	GGNCC	1 cut(s)	1018
CseI	GACGC	2 cut(s)	149, 209
Csp6I	GTAC	5 cut(s)	448, 531, 612, 777, 897
CspCI	CAANNNNNGTGG	2 cut(s)	943, 978
CviAII	CATG	7 cut(s)	87, 225, 291, 388, 511, 528, 643
CviQI	GTAC	5 cut(s)	448, 531, 612, 777, 897
DdeI	CTNAG	2 cut(s)	1101, 1203
DpnI	GATC	6 cut(s)	25, 371, 666, 804, 831, 991
DpnII	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
DraI	TTTAAA	1 cut(s)	343
DriI	GACNNNNNGTC	1 cut(s)	1063
Eam1104I	CTCTTC	2 cut(s)	742, 1154
Eam1105I	GACNNNNNGTC	1 cut(s)	1063
EarI	CTCTTC	2 cut(s)	742, 1154
Eco130I	CCWWGG	4 cut(s)	224, 404, 510, 1184
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	4 cut(s)	224, 404, 510, 1184
ErhI	CCWWGG	4 cut(s)	224, 404, 510, 1184
FaeI	CATG	7 cut(s)	90, 228, 294, 391, 514, 531, 646
FatI	CATG	7 cut(s)	86, 224, 290, 387, 510, 527, 642
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	2 cut(s)	664, 829
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	109, 330, 333
FokI	GGATG	2 cut(s)	527, 1205
Fsp4HI	GCNGC	3 cut(s)	109, 330, 333
FspBI	CTAG	1 cut(s)	1185
GluI	GCNGC	3 cut(s)	109, 330, 333
GsaI	CCCAGC	2 cut(s)	1074, 1127
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	126, 1020, 1090
HapII	CCGG	1 cut(s)	1087
HgaI	GACGC	2 cut(s)	149, 209
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	7 cut(s)	90, 228, 294, 391, 514, 531, 646
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	3 cut(s)	45, 78, 141
HpaII	CCGG	1 cut(s)	1087
HphI	GGTGA	3 cut(s)	194, 385, 943
Hpy166II	GTNNAC	6 cut(s)	99, 151, 450, 473, 614, 703
Hpy188I	TCNGA	4 cut(s)	28, 544, 637, 802
Hpy188III	TCNNGA	2 cut(s)	482, 878
Hpy8I	GTNNAC	6 cut(s)	99, 151, 450, 473, 614, 703
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	5 cut(s)	65, 487, 488, 534, 575
HpyCH4III	ACNGT	2 cut(s)	148, 307
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	7 cut(s)	243, 335, 380, 711, 1028, 1055, 1137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 123
HpyF3I	CTNAG	2 cut(s)	1101, 1203
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	7 cut(s)	90, 228, 294, 391, 514, 531, 646
Ksp22I	TGATCA	2 cut(s)	664, 829
Kzo9I	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
LmnI	GCTCC	3 cut(s)	512, 1097, 1177
Lsp1109I	GCAGC	3 cut(s)	120, 316, 319
LweI	GCATC	4 cut(s)	252, 698, 929, 988
MaeI	CTAG	1 cut(s)	1185
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	949, 973
MalI	GATC	6 cut(s)	25, 371, 666, 804, 831, 991
MboI	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
MfeI	CAATTG	1 cut(s)	1037
MflI	RGATCY	1 cut(s)	989
MluCI	AATT	6 cut(s)	587, 652, 905, 1013, 1037, 1213
MnlI	CCTC	8 cut(s)	46, 112, 347, 407, 411, 883, 967, 1096
MseI	TTAA	2 cut(s)	342, 1011
MslI	CAYNNNNRTG	2 cut(s)	180, 1149
MspI	CCGG	1 cut(s)	1087
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	1037
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	114, 123
NcoI	CCATGG	2 cut(s)	224, 510
NdeII	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
NlaIII	CATG	7 cut(s)	90, 228, 294, 391, 514, 531, 646
NmuCI	GTSAC	1 cut(s)	949
NspI	RCATGY	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	45, 78, 141
PflFI	GACNNNGTC	1 cut(s)	1204
PkrI	GCNGC	3 cut(s)	110, 331, 334
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	2 cut(s)	1070, 1123
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	1018
PsuI	RGATCY	1 cut(s)	989
PsyI	GACNNNGTC	1 cut(s)	1204
RsaI	GTAC	5 cut(s)	449, 532, 613, 778, 898
RsaNI	GTAC	5 cut(s)	448, 531, 612, 777, 897
RseI	CAYNNNNRTG	2 cut(s)	180, 1149
SaqAI	TTAA	2 cut(s)	342, 1011
SatI	GCNGC	3 cut(s)	109, 330, 333
Sau3AI	GATC	6 cut(s)	23, 369, 664, 802, 829, 989
Sau96I	GGNCC	1 cut(s)	1018
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	4 cut(s)	252, 698, 929, 988
SfcI	CTRYAG	2 cut(s)	1047, 1226
SmiMI	CAYNNNNRTG	2 cut(s)	180, 1149
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	6 cut(s)	587, 652, 905, 1013, 1037, 1213
SsiI	CCGC	3 cut(s)	115, 214, 846
SspMI	CTAG	1 cut(s)	1185
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	4 cut(s)	224, 404, 510, 1184
TaaI	ACNGT	2 cut(s)	148, 307
TaiI	ACGT	1 cut(s)	267
TasI	AATT	6 cut(s)	587, 652, 905, 1013, 1037, 1213
TatI	WGTACW	4 cut(s)	447, 530, 611, 896
TfiI	GAWTC	3 cut(s)	45, 78, 141
Tru1I	TTAA	2 cut(s)	342, 1011
Tru9I	TTAA	2 cut(s)	342, 1011
TscAI	CASTG	2 cut(s)	153, 933
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	3 cut(s)	108, 329, 332
Tsp45I	GTSAC	1 cut(s)	949
TspRI	CASTG	2 cut(s)	153, 933
Tth111I	GACNNNGTC	1 cut(s)	1204
XapI	RAATTY	1 cut(s)	587
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmaJI	CCTAGG	1 cut(s)	1184
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	1 cut(s)	1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.