Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Forward (+)

8503683 .. 8505565

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G106000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGGCAGAGAAGAAAGATTGGTTCAGAAATCCCAGAAACCCTAATCGCGGAGGAGCAAGAAGCAGAAGAAGGACGATTCTTCGCATGCTATCTGTTGAGCTCTCGCAGCCCCCGCTACAAAGGCCACACCTATATTGGATTCACAGTGAACCCACGGCGTCGTATAAGACAGCACAATGGTGAAATAGCGCAAGGTGCTTGGAGAACGAAGCGGAAGCGTCCATGGGAGATGGTGTTGTGCATCTATGGTTTCCCAACTAACGTTTCTGCTCTCCAGGATATTTCCAGCTTGATTGGGACCGTAGGCACCAGATTTGACAAATTGGGATTGAAGTTTGAATGGGCCTGGCAGCACCCAACTGTATCAAAGGCGGTTAGGCAGGCTGCTGCAGGCTTTAAATCACCGCGAGGGCTTGTCAGTAAGATCAAACTTGCATACACCATGCTCACTCTCCCTCCTTGGCAGAGCTTGAACATCACTGTAAAATTCTTTTCAACCCAGTACACCAAACATTCTGCTGGTTGTCCACGACTTCCGGAACAGATGAAGGTCAAAGTCTGCTCTATGGATGAGCTTCCTTCCTGTACTAAACCGTCTGATGACCTTTTGGAAAATGAAGATGAGTGGTGTCATGAAAGGGAATGTGATGAAGATATGAATTCCAGTACACTACCCGAAGAAACATTATTGGACTTCAGGACTCATAATTCAGCAGATGATCAGCAGAGTGATAGTGGCATTAGAATGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

253

Amino Acids

28.85

Weight (kDa)

7.61

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	2 cut(s)	50, 409
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	5 cut(s)	50, 115, 214, 374, 407
AclI	AACGTT	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	488, 661
AcuI	CTGAAG	1 cut(s)	682
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	3 cut(s)	506, 589, 670
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	334, 341, 475, 498
AjnI	CCWGG	2 cut(s)	276, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	102, 291, 471, 577
AluI	AGCT	4 cut(s)	102, 291, 471, 577
Alw21I	GWGCWC	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	124, 345
ApeKI	GCWGC	4 cut(s)	108, 352, 386, 389
ApoI	RAATTY	2 cut(s)	488, 661
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	300, 345
AsuHPI	GGTGA	2 cut(s)	194, 396
AvaII	GGWCC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	120, 364, 373, 376
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	278, 349
BclI	TGATCA	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	390
BisI	GCNGC	4 cut(s)	109, 353, 387, 390
BlsI	GCNGC	4 cut(s)	110, 354, 388, 391
Bme1390I	CCNGG	2 cut(s)	278, 349
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	300, 345
BmiI	GGNNCC	2 cut(s)	301, 310
BmrFI	CCNGG	2 cut(s)	278, 349
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	155, 224, 461
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	502, 666
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	2 cut(s)	278, 349
BseDI	CCNNGG	3 cut(s)	155, 224, 461
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	502, 666
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	120, 364, 373, 376
Bsh1236I	CGCG	2 cut(s)	50, 409
BshFI	GGCC	2 cut(s)	126, 347
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	126, 347
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	426, 721
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	5 cut(s)	50, 115, 214, 374, 407
BspANI	GGCC	2 cut(s)	126, 347
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	2 cut(s)	50, 409
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	301, 310
BspMAI	CTGCAG	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	502, 666
BssECI	CCNNGG	3 cut(s)	155, 224, 461
BssMI	GATC	2 cut(s)	426, 721
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	224, 461
Bst2UI	CCWGG	2 cut(s)	278, 349
Bst4CI	ACNGT	5 cut(s)	148, 304, 364, 484, 597
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	88, 384, 394
BstDSI	CCRYGG	2 cut(s)	155, 224
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	2 cut(s)	50, 409
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	429, 724
BstMBI	GATC	2 cut(s)	426, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 114, 123, 197
BstNI	CCWGG	2 cut(s)	278, 349
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	276, 347
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	2 cut(s)	50, 409
BstV1I	GCAGC	4 cut(s)	120, 364, 373, 376
BsuRI	GGCC	2 cut(s)	126, 347
BtgI	CCRYGG	2 cut(s)	155, 224
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	2 cut(s)	153, 480
Cac8I	GCNNGC	3 cut(s)	88, 384, 394
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	300, 345
CseI	GACGC	2 cut(s)	149, 209
Csp6I	GTAC	3 cut(s)	505, 588, 669
CviAII	CATG	4 cut(s)	87, 225, 445, 635
CviQI	GTAC	3 cut(s)	505, 588, 669
DpnI	GATC	2 cut(s)	428, 723
DpnII	GATC	2 cut(s)	426, 721
DraI	TTTAAA	1 cut(s)	400
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	224, 461
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	682
EcoICRI	GAGCTC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	276, 347
EcoT14I	CCWWGG	2 cut(s)	224, 461
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	224, 461
FaeI	CATG	4 cut(s)	90, 228, 448, 638
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	86, 224, 444, 634
FauI	CCCGC	1 cut(s)	122
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	109, 353, 387, 390
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	109, 353, 387, 390
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	109, 353, 387, 390
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	126, 347
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	2 cut(s)	149, 209
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	90, 228, 448, 638
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	78, 141, 703
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	194, 396
Hpy166II	GTNNAC	4 cut(s)	151, 507, 530, 671
Hpy188I	TCNGA	2 cut(s)	28, 601
Hpy188III	TCNNGA	3 cut(s)	539, 635, 700
Hpy8I	GTNNAC	4 cut(s)	151, 507, 530, 671
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	65, 544, 591
HpyCH4III	ACNGT	5 cut(s)	148, 304, 364, 484, 597
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	243, 392, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 114, 123, 197
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	90, 228, 448, 638
HspAI	GCGC	1 cut(s)	191
Kpn2I	TCCGGA	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	426, 721
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	120, 364, 373, 376
LweI	GCATC	1 cut(s)	252
MaeII	ACGT	1 cut(s)	264
MalI	GATC	2 cut(s)	428, 723
MboI	GATC	2 cut(s)	426, 721
MboII	GAAGA	6 cut(s)	24, 73, 80, 632, 665, 692
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	4 cut(s)	323, 488, 661, 709
MlyI	GAGTC	1 cut(s)	697
MnlI	CCTC	3 cut(s)	46, 404, 468
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	180, 746
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	278, 349
MvaI	CCWGG	2 cut(s)	278, 349
MvnI	CGCG	2 cut(s)	50, 409
MwoI	GCNNNNNNNGC	4 cut(s)	108, 114, 123, 197
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	426, 721
NlaIII	CATG	4 cut(s)	90, 228, 448, 638
NlaIV	GGNNCC	2 cut(s)	301, 310
NspI	RCATGY	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	78, 141
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	110, 354, 388, 391
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
Psp124BI	GAGCTC	1 cut(s)	104
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	276, 347
PspGI	CCWGG	2 cut(s)	276, 347
PspN4I	GGNNCC	2 cut(s)	301, 310
PspPI	GGNCC	2 cut(s)	300, 345
PstI	CTGCAG	1 cut(s)	394
RsaI	GTAC	3 cut(s)	506, 589, 670
RsaNI	GTAC	3 cut(s)	505, 588, 669
RseI	CAYNNNNRTG	2 cut(s)	180, 746
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	4 cut(s)	109, 353, 387, 390
Sau3AI	GATC	2 cut(s)	426, 721
Sau96I	GGNCC	2 cut(s)	300, 345
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	278, 349
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	9 cut(s)	104, 134, 199, 267, 293, 473, 555, 579, 609
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	180, 746
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	4 cut(s)	323, 488, 661, 709
SsiI	CCGC	5 cut(s)	50, 115, 214, 374, 407
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	276, 347
StyI	CCWWGG	2 cut(s)	224, 461
TaaI	ACNGT	5 cut(s)	148, 304, 364, 484, 597
TaiI	ACGT	1 cut(s)	267
TasI	AATT	4 cut(s)	323, 488, 661, 709
TatI	WGTACW	3 cut(s)	504, 587, 668
TfiI	GAWTC	2 cut(s)	78, 141
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	153, 487
TseI	GCWGC	4 cut(s)	108, 352, 386, 389
TspDTI	ATGAA	5 cut(s)	563, 633, 651, 666, 674
TspRI	CASTG	2 cut(s)	153, 487
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	2 cut(s)	488, 661
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.