Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

78808089 .. 78810366

Gene Structure 2278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG494800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGGCAGAGAAGAAAGAACGCATCAGAAAACCCAGAAACCCTAACGCCGGAAGAATCTGAAGGAGGCCGATTCTTTGCTTGCTATCTGCTGACGTCACGCTGCCCCCGTTATAAGGGCCACACCTATATTGGATTCACGGTGAATCCACGGCGGCGAATAAGGCAGCACAATGGGGAAATTGGGAGAGGTGCTTGGAGAACCAAGAAGAAGAGGCCATGGGAGATGGCCTTGTGTATTTATGGTTTCCCAACTAACACTTCAGCTCTCCAGTTTGAATGGGCCTGGCAGAACCCGTATGTATCAAAGGCAGTAAGGAAGGCTGCAGCGAACTTTAAATCCCTCGGAGGATTTGCCAATAAGATCAAACTTGCATACACAATGCTCACCTTGCCGCCTTGGGAAAGTTTGAACCTCACCGTGAACTTTTTTTCAACCGAACACACCAAGCATGCTGCTGGTTGTCCACGCCTCCCAGAACAGATGAAGGTCAAAATTTGCCCCATGGATGAGCTTCCTTCCTGTATATCAGATGATGTTTCTGATAATGAAGATGAGTGGTATAAGGAAAAGGAAAGTGATGAAGCTATGCATATCAATACATCAGAGGAAGAAGCATTATCAGACCCAGTAGTTCCTAATTCAGCAGATGATGAGCAGAATGATATTGGGAATAGAAGTAACGAAGTCTACGCACAGAGTAAAGAAGTAGGAGAAGATGAGTGGTATATTGATAAAGTATCTGATGAAGCTATGAACAGTGGTCTCTCCTGGGAAGAAACATTATCAAATTTTATGGTTCACAATTCATCAAATGACTTGGAAATGGATACTGGCAATACATCTAGTCACATTTATGGATGCGATAAAGAAGTACAAGAAGACGTCACTGGGGAATATATCACATCACCAGTGAGAATGCCATACTCCAATGTCATTCCATCATTTGATACAGAAGCAAGTAAGAATACAGGTTTGTTTGATGACAGTACTGTCGAGTTGGATCAACCGGCAAGGGAACAATCACCAACTATAATAGTTGCAGACAATGAACTGTCGCCCAGCAATAGTTATCTCAGGCCTTGTGATTCTGAGGTAGTAGATTTGATAACTCCATCACCACTGTGCAGAAATGGTTTCTGTGGCAAGAGGAGTAGAGTTCCTACATCTTATCCTGAGATTATCGACTTGACCAAGTCTCCCAATTTCATCCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

406

Amino Acids

45.97

Weight (kDa)

4.88

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY-YIG	PF01541	27 - 101	1.6e-14	GIY-YIG catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AasI	GACNNNNNNGTC	1 cut(s)	992
AatII	GACGTC	2 cut(s)	98, 888
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	2 cut(s)	154, 395
AclWI	GGATC	1 cut(s)	1011
AcsI	RAATTY	2 cut(s)	495, 790
AcuI	CTGAAG	2 cut(s)	81, 246
AcyI	GRCGYC	2 cut(s)	95, 885
AfaI	GTAC	2 cut(s)	876, 991
AfiI	CCNNNNNNNGG	2 cut(s)	49, 115
AgsI	TTSAA	3 cut(s)	278, 412, 435
AjnI	CCWGG	2 cut(s)	284, 770
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AleI	CACNNNNGTG	1 cut(s)	1123
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	4 cut(s)	266, 514, 587, 752
AluI	AGCT	4 cut(s)	266, 514, 587, 752
Alw26I	GTCTC	2 cut(s)	770, 1203
AlwI	GGATC	1 cut(s)	1011
AoxI	GGCC	6 cut(s)	67, 118, 215, 228, 282, 1079
ApeKI	GCWGC	5 cut(s)	102, 166, 323, 326, 455
ApoI	RAATTY	2 cut(s)	495, 790
AspS9I	GGNCC	2 cut(s)	118, 282
AsuHPI	GGTGA	6 cut(s)	154, 379, 409, 900, 1017, 1110
BbsI	GAAGAC	1 cut(s)	888
BbvI	GCAGC	5 cut(s)	89, 178, 310, 338, 442
BccI	CCATC	3 cut(s)	220, 949, 1123
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	286, 772
BciVI	GTATCC	1 cut(s)	823
BcoDI	GTCTC	2 cut(s)	770, 1203
BfaI	CTAG	1 cut(s)	846
BfmI	CTRYAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	7 cut(s)	103, 155, 167, 324, 327, 395, 456
BlsI	GCNGC	7 cut(s)	104, 156, 168, 325, 328, 396, 457
BmcAI	AGTACT	1 cut(s)	991
Bme1390I	CCNGG	2 cut(s)	286, 772
BmgT120I	GGNCC	2 cut(s)	118, 282
BmrFI	CCNGG	2 cut(s)	286, 772
BmrI	ACTGGG	2 cut(s)	623, 900
BmsI	GCATC	2 cut(s)	32, 851
BmuI	ACTGGG	2 cut(s)	623, 900
BpiI	GAAGAC	1 cut(s)	888
BpmI	CTGGAG	1 cut(s)	254
BsaHI	GRCGYC	2 cut(s)	95, 885
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	6 cut(s)	149, 218, 343, 398, 504, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	1183, 1213
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 115
Bse118I	RCCGGY	1 cut(s)	1009
Bse1I	ACTGG	5 cut(s)	271, 629, 838, 895, 911
BseBI	CCWGG	2 cut(s)	286, 772
BseDI	CCNNGG	6 cut(s)	149, 218, 343, 398, 504, 771
BseGI	GGATG	3 cut(s)	514, 866, 1209
BseLI	CCNNNNNNNGG	2 cut(s)	49, 115
BseMII	CTCAG	3 cut(s)	1083, 1090, 1167
BseNI	ACTGG	5 cut(s)	271, 629, 838, 895, 911
BseRI	GAGGAG	1 cut(s)	1165
BseXI	GCAGC	5 cut(s)	89, 178, 310, 338, 442
BseYI	CCCAGC	1 cut(s)	1061
BsgI	GTGCAG	1 cut(s)	1147
BshFI	GGCC	6 cut(s)	69, 120, 217, 230, 284, 1081
BsiSI	CCGG	2 cut(s)	50, 1010
BslI	CCNNNNNNNGG	2 cut(s)	49, 115
BsmAI	GTCTC	2 cut(s)	770, 1203
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	6 cut(s)	69, 120, 217, 230, 284, 1081
Bso31I	GGTCTC	1 cut(s)	770
Bsp143I	GATC	2 cut(s)	363, 1003
Bsp19I	CCATGG	2 cut(s)	218, 504
BspACI	CCGC	2 cut(s)	154, 395
BspANI	GGCC	6 cut(s)	69, 120, 217, 230, 284, 1081
BspCNI	CTCAG	3 cut(s)	1084, 1089, 1168
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	1011
BspTNI	GGTCTC	1 cut(s)	770
BsrFI	RCCGGY	1 cut(s)	1009
BsrI	ACTGG	5 cut(s)	271, 629, 838, 895, 911
BssAI	RCCGGY	1 cut(s)	1009
BssECI	CCNNGG	6 cut(s)	149, 218, 343, 398, 504, 771
BssMI	GATC	2 cut(s)	363, 1003
BssNI	GRCGYC	2 cut(s)	95, 885
BssT1I	CCWWGG	3 cut(s)	218, 398, 504
Bst2UI	CCWGG	2 cut(s)	286, 772
Bst4CI	ACNGT	7 cut(s)	142, 421, 761, 989, 994, 1056, 1125
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	2 cut(s)	95, 885
BstC8I	GCNNGC	2 cut(s)	82, 453
BstDEI	CTNAG	3 cut(s)	1076, 1092, 1176
BstDSI	CCRYGG	3 cut(s)	149, 218, 504
BstF5I	GGATG	3 cut(s)	514, 866, 1209
BstKTI	GATC	2 cut(s)	366, 1006
BstMAI	GTCTC	2 cut(s)	770, 1203
BstMBI	GATC	2 cut(s)	363, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 391
BstNI	CCWGG	2 cut(s)	286, 772
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	284, 770
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	89, 178, 310, 338, 442
BstV2I	GAAGAC	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	6 cut(s)	69, 120, 217, 230, 284, 1081
BtgI	CCRYGG	3 cut(s)	149, 218, 504
BtsCI	GGATG	3 cut(s)	514, 866, 1209
BtsIMutI	CAGTG	4 cut(s)	766, 888, 918, 1121
Cac8I	GCNNGC	2 cut(s)	82, 453
Cfr10I	RCCGGY	1 cut(s)	1009
Cfr13I	GGNCC	2 cut(s)	118, 282
Csp6I	GTAC	2 cut(s)	875, 990
CviAII	CATG	3 cut(s)	219, 452, 505
CviQI	GTAC	2 cut(s)	875, 990
DdeI	CTNAG	3 cut(s)	1076, 1092, 1176
DpnI	GATC	2 cut(s)	365, 1005
DpnII	GATC	2 cut(s)	363, 1003
DraI	TTTAAA	1 cut(s)	337
DrdI	GACNNNNNNGTC	1 cut(s)	992
DseDI	GACNNNNNNGTC	1 cut(s)	992
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	3 cut(s)	218, 398, 504
Eco147I	AGGCCT	1 cut(s)	1081
Eco31I	GGTCTC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	81, 246
EcoRII	CCWGG	2 cut(s)	284, 770
EcoT14I	CCWWGG	3 cut(s)	218, 398, 504
EcoT22I	ATGCAT	1 cut(s)	594
ErhI	CCWWGG	3 cut(s)	218, 398, 504
FaeI	CATG	3 cut(s)	222, 455, 508
FatI	CATG	3 cut(s)	218, 451, 504
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	7 cut(s)	103, 155, 167, 324, 327, 395, 456
FokI	GGATG	3 cut(s)	521, 873, 1196
Fsp4HI	GCNGC	7 cut(s)	103, 155, 167, 324, 327, 395, 456
FspBI	CTAG	1 cut(s)	846
GluI	GCNGC	7 cut(s)	103, 155, 167, 324, 327, 395, 456
GsaI	CCCAGC	1 cut(s)	1065
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	6 cut(s)	69, 120, 217, 230, 284, 1081
HapII	CCGG	2 cut(s)	50, 1010
Hin1I	GRCGYC	2 cut(s)	95, 885
Hin1II	CATG	3 cut(s)	222, 455, 508
HinfI	GANTC	5 cut(s)	56, 72, 135, 145, 1088
HpaII	CCGG	2 cut(s)	50, 1010
HphI	GGTGA	6 cut(s)	154, 379, 409, 900, 1017, 1110
Hpy166II	GTNNAC	4 cut(s)	424, 467, 691, 802
Hpy188I	TCNGA	9 cut(s)	28, 61, 347, 532, 544, 607, 625, 745, 1093
Hpy188III	TCNNGA	1 cut(s)	1175
Hpy8I	GTNNAC	4 cut(s)	424, 467, 691, 802
HpyAV	CCTTC	4 cut(s)	56, 313, 481, 528
HpyCH4III	ACNGT	7 cut(s)	142, 421, 761, 989, 994, 1056, 1125
HpyCH4IV	ACGT	2 cut(s)	95, 885
HpyCH4V	TGCA	5 cut(s)	326, 374, 592, 1043, 1128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 391
HpyF3I	CTNAG	3 cut(s)	1076, 1092, 1176
HpySE526I	ACGT	2 cut(s)	95, 885
Hsp92I	GRCGYC	2 cut(s)	95, 885
Hsp92II	CATG	3 cut(s)	222, 455, 508
Kzo9I	GATC	2 cut(s)	363, 1003
Lsp1109I	GCAGC	5 cut(s)	89, 178, 310, 338, 442
LweI	GCATC	2 cut(s)	32, 851
MaeI	CTAG	1 cut(s)	846
MaeII	ACGT	2 cut(s)	95, 885
MaeIII	GTNAC	4 cut(s)	96, 680, 848, 886
MalI	GATC	2 cut(s)	365, 1005
MboI	GATC	2 cut(s)	363, 1003
MboII	GAAGA	9 cut(s)	24, 65, 220, 223, 563, 623, 728, 788, 893
MfeI	CAATTG	1 cut(s)	1214
MluCI	AATT	7 cut(s)	180, 495, 640, 790, 805, 1204, 1214
MmeI	TCCRAC	1 cut(s)	981
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	855, 1123
MspI	CCGG	2 cut(s)	50, 1010
MspR9I	CCNGG	2 cut(s)	286, 772
MunI	CAATTG	1 cut(s)	1214
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	2 cut(s)	286, 772
MwoI	GCNNNNNNNGC	2 cut(s)	163, 391
NcoI	CCATGG	2 cut(s)	218, 504
NdeII	GATC	2 cut(s)	363, 1003
NlaIII	CATG	3 cut(s)	222, 455, 508
NmuCI	GTSAC	3 cut(s)	96, 848, 886
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	455
OliI	CACNNNNGTG	1 cut(s)	1123
PaeI	GCATGC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	1081
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PctI	GAATGC	1 cut(s)	924
PfeI	GAWTC	5 cut(s)	56, 72, 135, 145, 1088
PflFI	GACNNNGTC	1 cut(s)	1195
PkrI	GCNGC	7 cut(s)	104, 156, 168, 325, 328, 396, 457
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	284, 770
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	2 cut(s)	284, 770
PspPI	GGNCC	2 cut(s)	118, 282
PstI	CTGCAG	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	1195
RsaI	GTAC	2 cut(s)	876, 991
RsaNI	GTAC	2 cut(s)	875, 990
RseI	CAYNNNNRTG	2 cut(s)	855, 1123
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	7 cut(s)	103, 155, 167, 324, 327, 395, 456
Sau3AI	GATC	2 cut(s)	363, 1003
Sau96I	GGNCC	2 cut(s)	118, 282
ScaI	AGTACT	1 cut(s)	991
ScrFI	CCNGG	2 cut(s)	286, 772
SfaNI	GCATC	2 cut(s)	32, 851
SfcI	CTRYAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	855, 1123
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	7 cut(s)	180, 495, 640, 790, 805, 1204, 1214
SseBI	AGGCCT	1 cut(s)	1081
SsiI	CCGC	2 cut(s)	154, 395
SspMI	CTAG	1 cut(s)	846
StuI	AGGCCT	1 cut(s)	1081
StyD4I	CCNGG	2 cut(s)	284, 770
StyI	CCWWGG	3 cut(s)	218, 398, 504
TaaI	ACNGT	7 cut(s)	142, 421, 761, 989, 994, 1056, 1125
TaiI	ACGT	2 cut(s)	98, 888
TaqI	TCGA	2 cut(s)	996, 1185
TasI	AATT	7 cut(s)	180, 495, 640, 790, 805, 1204, 1214
TatI	WGTACW	2 cut(s)	874, 989
TauI	GCSGC	2 cut(s)	157, 397
TfiI	GAWTC	5 cut(s)	56, 72, 135, 145, 1088
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	4 cut(s)	766, 895, 918, 1128
TseFI	GTSAC	3 cut(s)	96, 848, 886
TseI	GCWGC	5 cut(s)	102, 166, 323, 326, 455
Tsp45I	GTSAC	3 cut(s)	96, 848, 886
TspDTI	ATGAA	8 cut(s)	500, 564, 597, 762, 770, 798, 1065, 1198
TspRI	CASTG	4 cut(s)	766, 895, 918, 1128
Tth111I	GACNNNGTC	1 cut(s)	1195
XapI	RAATTY	2 cut(s)	495, 790
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	846
ZraI	GACGTC	2 cut(s)	96, 886
ZrmI	AGTACT	1 cut(s)	991
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.