Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Forward (+)

4798964 .. 4801103

Gene Structure 2140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1056400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGGCAGAAGAAAAAGGCAGGATCAGAAATCCCTGAAACCCCATCGGCGATGGCAGAAGAAGAAGAAGAAGGAGAAGGTCGATTCTTTGCTTGCTATCTGTTGAACTCTCGCAGCCCTCGCTACAAGGGCCACACTTATATTGGGTTCACAGTGAATCCGCGGCGGCGAATAAGGCAGCACAACGGAGAAATATCGCAAGGAGCCTGGAGAACGAAGCGAAAGCGGCCTTGGGAGATGGTCATGTGCATCTATGGTTTCCCAACAAACGTTTCTGCTCTCCAGTTTGAATGGGCCTGGCAGAATCCAACTGTATCAAAGGCAGTTAGGCAGGCTGCTGCAAGCTTTAAAACCCTTGGAGGACTTGTCAGCAAGATCAAGCTTGCATACACAATGCTCACTCTTCTGCCATGGAACAGCCTGAACCTCACTGTGAACTTCTTTTCGAGCCAGTACACCAAGCATTCTGCTGGCTGTCCACGCCTGCCGGAGCAGGTGAAGGTCAAAGTTTGCTCCATGGATGATCTTCCTTCCTCAACCAAACTATCTGATGACATTTTTGAAAATGAAGATGATTGGTGCAATGAAAGGGAATGTGATCAAGATATGTGTACCAGTAGTTCGCCACAGGAAAACACATTATTGGACGTCATGGTTCATAATTCAGCAGGCGATCAGCATAATGATATCGGCAATAAAGTAGGAAGCTATGAGTGCTACAATGAAAAAGAATGTGATGAATTCTTGTATGACAGCACTCTAGAGCAAGAACCATTGTCAGATTTTATAGTTCATAATTCAGAAGATGATCAGCAGGATGATACAGAAATGACAATTAAAGAAGTATATGGAGACAGTCAGCAAGTAAAGGAAGATTGCACAGAGCAATTTGGTTTTATCACATCACCGGTGAGAATGCCATCTTCGAATGTGGCTACCACATCTTCCGATGACAGTAGTGTTGAACTGAGGCATCCTGCAAGGGAACAATTGACAATTACAGTGGCGGACGATGATCAGTCACCGGGTGAAAGCTATCTCAGGCCTTGTGGAGCCGAGGTAATAGACTTGACTACTCCAGCTCCTCAATGTAGAAGCGGTTCATGTGGTGGGAAGAGTAGAGTTGTCACCACTTATCCTCAGATTATTGACTTGACTATGTCTCCAAATTTCATCCAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

395

Amino Acids

44.4

Weight (kDa)

4.82

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIY-YIG	PF01541	33 - 104	2.1e-13	GIY-YIG catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
AatII	GACGTC	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	484
AccII	CGCG	1 cut(s)	163
AciI	CCGC	6 cut(s)	161, 163, 166, 226, 1007, 1098
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	740, 1168
AcyI	GRCGYC	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	1028
AfaI	GTAC	2 cut(s)	455, 613
AgeI	ACCGGT	1 cut(s)	907
AgsI	TTSAA	4 cut(s)	106, 290, 563, 965
AjnI	CCWGG	2 cut(s)	206, 296
AjuI	GAANNNNNNNTTGG	4 cut(s)	214, 246, 256, 288
AluBI	AGCT	5 cut(s)	345, 382, 708, 1035, 1082
AluI	AGCT	5 cut(s)	345, 382, 708, 1035, 1082
Alw26I	GTCTC	2 cut(s)	846, 1167
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	4 cut(s)	130, 227, 294, 1043
ApeKI	GCWGC	4 cut(s)	114, 178, 335, 338
ApoI	RAATTY	2 cut(s)	740, 1168
AsiGI	ACCGGT	1 cut(s)	907
Asp700I	GAANNNNTTC	1 cut(s)	1099
AspS9I	GGNCC	2 cut(s)	130, 294
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	6 cut(s)	508, 897, 922, 1014, 1040, 1120
AsuII	TTCGAA	1 cut(s)	926
BbvI	GCAGC	4 cut(s)	126, 190, 322, 325
BccI	CCATC	4 cut(s)	46, 52, 232, 928
BciT130I	CCWGG	2 cut(s)	208, 298
BclI	TGATCA	3 cut(s)	598, 808, 1015
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	2 cut(s)	846, 1167
BfaI	CTAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	7 cut(s)	115, 164, 167, 179, 227, 336, 339
BlsI	GCNGC	7 cut(s)	116, 165, 168, 180, 228, 337, 340
Bme1390I	CCNGG	3 cut(s)	208, 298, 1026
BmgT120I	GGNCC	2 cut(s)	130, 294
BmiI	GGNNCC	2 cut(s)	205, 1054
BmrFI	CCNGG	3 cut(s)	208, 298, 1026
BmsI	GCATC	2 cut(s)	258, 982
BpmI	CTGGAG	3 cut(s)	229, 266, 1062
Bpu14I	TTCGAA	1 cut(s)	926
BpuMI	CCSGG	1 cut(s)	1026
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	6 cut(s)	161, 230, 355, 410, 516, 1056
BsaWI	WCCGGW	1 cut(s)	907
BsaXI	ACNNNNNCTCC	8 cut(s)	351, 381, 1044, 1066, 1074, 1096, 1147, 1177
Bse118I	RCCGGY	1 cut(s)	907
Bse1I	ACTGG	3 cut(s)	283, 451, 615
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	208, 298
BseDI	CCNNGG	6 cut(s)	161, 230, 355, 410, 516, 1056
BseGI	GGATG	4 cut(s)	526, 823, 973, 1173
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	3 cut(s)	959, 1054, 1154
BseNI	ACTGG	3 cut(s)	283, 451, 615
BseRI	GAGGAG	1 cut(s)	1074
BseXI	GCAGC	4 cut(s)	126, 190, 322, 325
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	4 cut(s)	132, 229, 296, 1045
BshTI	ACCGGT	1 cut(s)	907
BsiSI	CCGG	3 cut(s)	488, 908, 1025
BsmAI	GTCTC	2 cut(s)	846, 1167
BsmI	GAATGC	2 cut(s)	463, 921
BsnI	GGCC	4 cut(s)	132, 229, 296, 1045
Bsp119I	TTCGAA	1 cut(s)	926
Bsp143I	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
Bsp19I	CCATGG	2 cut(s)	410, 516
BspACI	CCGC	6 cut(s)	161, 163, 166, 226, 1007, 1098
BspANI	GGCC	4 cut(s)	132, 229, 296, 1045
BspCNI	CTCAG	3 cut(s)	960, 1053, 1153
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	205, 1054
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	926
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	907
BsrI	ACTGG	3 cut(s)	283, 451, 615
BssAI	RCCGGY	1 cut(s)	907
BssECI	CCNNGG	6 cut(s)	161, 230, 355, 410, 516, 1056
BssMI	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
BssNI	GRCGYC	1 cut(s)	648
BssT1I	CCWWGG	4 cut(s)	230, 355, 410, 516
Bst2UI	CCWGG	2 cut(s)	208, 298
Bst4CI	ACNGT	6 cut(s)	154, 313, 433, 857, 956, 1003
Bst6I	CTCTTC	2 cut(s)	408, 1109
BstACI	GRCGYC	1 cut(s)	648
BstBI	TTCGAA	1 cut(s)	926
BstC8I	GCNNGC	7 cut(s)	94, 333, 343, 384, 472, 485, 670
BstDEI	CTNAG	3 cut(s)	968, 1040, 1140
BstDSI	CCRYGG	3 cut(s)	161, 410, 516
BstF5I	GGATG	4 cut(s)	526, 823, 973, 1173
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	7 cut(s)	26, 378, 526, 601, 676, 811, 1018
BstMAI	GTCTC	2 cut(s)	846, 1167
BstMBI	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 129, 175, 226, 480, 714
BstNI	CCWGG	2 cut(s)	208, 298
BstSCI	CCNGG	3 cut(s)	206, 296, 1024
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	126, 190, 322, 325
BsuRI	GGCC	4 cut(s)	132, 229, 296, 1045
BtgI	CCRYGG	3 cut(s)	161, 410, 516
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	4 cut(s)	526, 823, 973, 1173
BtsIMutI	CAGTG	3 cut(s)	159, 429, 1008
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	7 cut(s)	94, 333, 343, 384, 472, 485, 670
Cfr10I	RCCGGY	1 cut(s)	907
Cfr13I	GGNCC	2 cut(s)	130, 294
Cfr42I	CCGCGG	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	454, 612
CspAI	ACCGGT	1 cut(s)	907
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
CviAII	CATG	5 cut(s)	244, 411, 517, 652, 1104
CviQI	GTAC	2 cut(s)	454, 612
DdeI	CTNAG	3 cut(s)	968, 1040, 1140
DpnI	GATC	7 cut(s)	25, 377, 525, 600, 675, 810, 1017
DpnII	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
DraI	TTTAAA	1 cut(s)	349
DraIII	CACNNNGTG	1 cut(s)	1028
Eam1104I	CTCTTC	2 cut(s)	408, 1109
EarI	CTCTTC	2 cut(s)	408, 1109
EciI	GGCGGA	1 cut(s)	1022
Eco130I	CCWWGG	4 cut(s)	230, 355, 410, 516
Eco147I	AGGCCT	1 cut(s)	1045
Eco32I	GATATC	1 cut(s)	688
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	206, 296
EcoRV	GATATC	1 cut(s)	688
EcoT14I	CCWWGG	4 cut(s)	230, 355, 410, 516
ErhI	CCWWGG	4 cut(s)	230, 355, 410, 516
FaeI	CATG	5 cut(s)	247, 414, 520, 655, 1107
FatI	CATG	5 cut(s)	243, 410, 516, 651, 1103
FbaI	TGATCA	3 cut(s)	598, 808, 1015
Fnu4HI	GCNGC	7 cut(s)	115, 164, 167, 179, 227, 336, 339
FokI	GGATG	4 cut(s)	533, 830, 960, 1160
Fsp4HI	GCNGC	7 cut(s)	115, 164, 167, 179, 227, 336, 339
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	7 cut(s)	115, 164, 167, 179, 227, 336, 339
GsuI	CTGGAG	3 cut(s)	229, 266, 1062
HaeIII	GGCC	4 cut(s)	132, 229, 296, 1045
HapII	CCGG	3 cut(s)	488, 908, 1025
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	247, 414, 520, 655, 1107
HindIII	AAGCTT	2 cut(s)	343, 380
HinfI	GANTC	3 cut(s)	84, 157, 304
HpaII	CCGG	3 cut(s)	488, 908, 1025
HphI	GGTGA	6 cut(s)	508, 897, 922, 1014, 1040, 1120
Hpy166II	GTNNAC	5 cut(s)	150, 436, 456, 479, 612
Hpy188I	TCNGA	6 cut(s)	28, 550, 781, 802, 949, 1143
Hpy188III	TCNNGA	2 cut(s)	602, 761
Hpy8I	GTNNAC	5 cut(s)	150, 436, 456, 479, 612
HpyAV	CCTTC	4 cut(s)	65, 71, 493, 540
HpyCH4III	ACNGT	6 cut(s)	154, 313, 433, 857, 956, 1003
HpyCH4IV	ACGT	2 cut(s)	270, 648
HpyCH4V	TGCA	6 cut(s)	249, 341, 386, 582, 879, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 129, 175, 226, 480, 714
HpyF3I	CTNAG	3 cut(s)	968, 1040, 1140
HpySE526I	ACGT	2 cut(s)	270, 648
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	247, 414, 520, 655, 1107
Ksp22I	TGATCA	3 cut(s)	598, 808, 1015
KspI	CCGCGG	1 cut(s)	164
Kzo9I	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
LmnI	GCTCC	5 cut(s)	203, 490, 518, 1052, 1087
Lsp1109I	GCAGC	4 cut(s)	126, 190, 322, 325
LweI	GCATC	2 cut(s)	258, 982
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	2 cut(s)	270, 648
MaeIII	GTNAC	2 cut(s)	1020, 1126
MalI	GATC	7 cut(s)	25, 377, 525, 600, 675, 810, 1017
MboI	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
MfeI	CAATTG	1 cut(s)	989
MluCI	AATT	9 cut(s)	661, 740, 796, 834, 887, 989, 996, 1168, 1178
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	8 cut(s)	129, 353, 437, 544, 963, 1051, 1095, 1149
MroXI	GAANNNNTTC	1 cut(s)	1099
MseI	TTAA	2 cut(s)	348, 837
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	3 cut(s)	488, 908, 1025
MspR9I	CCNGG	3 cut(s)	208, 298, 1026
MunI	CAATTG	1 cut(s)	989
Mva1269I	GAATGC	2 cut(s)	463, 921
MvaI	CCWGG	2 cut(s)	208, 298
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	120, 129, 175, 226, 480, 714
NciI	CCSGG	1 cut(s)	1026
NcoI	CCATGG	2 cut(s)	410, 516
NdeII	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
NlaIII	CATG	5 cut(s)	247, 414, 520, 655, 1107
NlaIV	GGNNCC	2 cut(s)	205, 1054
NmeAIII	GCCGAG	1 cut(s)	1081
NmuCI	GTSAC	2 cut(s)	1020, 1126
NspV	TTCGAA	1 cut(s)	926
PaqCI	CACCTGC	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	1045
PctI	GAATGC	2 cut(s)	463, 921
PdmI	GAANNNNTTC	1 cut(s)	1099
PfeI	GAWTC	3 cut(s)	84, 157, 304
PflFI	GACNNNGTC	1 cut(s)	1159
PinAI	ACCGGT	1 cut(s)	907
PkrI	GCNGC	7 cut(s)	116, 165, 168, 180, 228, 337, 340
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	206, 296
PspGI	CCWGG	2 cut(s)	206, 296
PspN4I	GGNNCC	2 cut(s)	205, 1054
PspPI	GGNCC	2 cut(s)	130, 294
PsrI	GAACNNNNNNTAC	4 cut(s)	604, 636, 1084, 1116
PsyI	GACNNNGTC	1 cut(s)	1159
RsaI	GTAC	2 cut(s)	455, 613
RsaNI	GTAC	2 cut(s)	454, 612
SacII	CCGCGG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	348, 837
SatI	GCNGC	7 cut(s)	115, 164, 167, 179, 227, 336, 339
Sau3AI	GATC	7 cut(s)	23, 375, 523, 598, 673, 808, 1015
Sau96I	GGNCC	2 cut(s)	130, 294
ScrFI	CCNGG	3 cut(s)	208, 298, 1026
SfaNI	GCATC	2 cut(s)	258, 982
Sfr303I	CCGCGG	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	926
SgrAI	CRCCGGYG	1 cut(s)	907
SgrBI	CCGCGG	1 cut(s)	164
Sse9I	AATT	9 cut(s)	661, 740, 796, 834, 887, 989, 996, 1168, 1178
SseBI	AGGCCT	1 cut(s)	1045
SsiI	CCGC	6 cut(s)	161, 163, 166, 226, 1007, 1098
SspMI	CTAG	1 cut(s)	761
StuI	AGGCCT	1 cut(s)	1045
StyD4I	CCNGG	3 cut(s)	206, 296, 1024
StyI	CCWWGG	4 cut(s)	230, 355, 410, 516
TaaI	ACNGT	6 cut(s)	154, 313, 433, 857, 956, 1003
TaiI	ACGT	2 cut(s)	273, 651
TaqI	TCGA	3 cut(s)	82, 446, 926
TasI	AATT	9 cut(s)	661, 740, 796, 834, 887, 989, 996, 1168, 1178
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	3 cut(s)	166, 169, 229
TfiI	GAWTC	3 cut(s)	84, 157, 304
Tru1I	TTAA	2 cut(s)	348, 837
Tru9I	TTAA	2 cut(s)	348, 837
TscAI	CASTG	3 cut(s)	159, 436, 1008
TseFI	GTSAC	2 cut(s)	1020, 1126
TseI	GCWGC	4 cut(s)	114, 178, 335, 338
Tsp45I	GTSAC	2 cut(s)	1020, 1126
TspDTI	ATGAA	8 cut(s)	582, 600, 647, 738, 753, 782, 1092, 1162
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	159, 436, 1008
Tth111I	GACNNNGTC	1 cut(s)	1159
XapI	RAATTY	2 cut(s)	740, 1168
XbaI	TCTAGA	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	1099
XspI	CTAG	1 cut(s)	761
ZraI	GACGTC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.