Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006112

Physical Location & Seq

Genomic Coordinates Reverse (-)

8260209 .. 8261014

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTTGTTAAGAAGAGTTACAGAACGAAGTCAACAGGGGGACTGCCATACTCACCACAAACGATTTCACAACATCAACAGTGGTGTCAAAGCTGCTTACTGTCTCTACATGCTGTACGAAAACCTTCTTGGTCTGCGATTCTTCTGCTGCATTATAAATATAAGAAATCAGCACTGAATATTCCCGGGCTTCTAAAACTTTCCATCTACATTCGAAATCTGCATAACTACAAATTCCTTCACTATTTGAGTGCAAACAATCATAAATGTAGATTGCTAATATATGAAATCCCAGAAACCCTAATCGCGGAGGAGGAAGAAGCAGAAGAAGGACGATTCTTCGCATGCTATCTGTTGAGCTCTCGTAGCCCCCGCTACAAAGGCCACACCTATATTCGATTCACAGTGAACCCACGGCGTCGTATAAGACAGCACAATGGTGAAATAGCGCAAGGTGCTTGGAGAACGAAGCGGAAGCGTCCATGGGAGATGGTGTTGTGCATCTATGGTTTCCCAACTAACGTTTCTGCTCTCCAGGTCTCTTCATTTCTTTCTTTTGTTCTCTTTACATATAACTTGTCTATGGATTGCTCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0001325 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008821 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017108 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032206 GO:0032991 GO:0033043 GO:0033044 GO:0033557 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045935 GO:0046483 GO:0048256 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090656 GO:0090737 GO:0140097 GO:1901360 GO:1904429 GO:1904431 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

GIY-YIG

Protein Analysis

200

Amino Acids

23.31

Weight (kDa)

9.84

Isoelectric Point (pI)

57.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30350 AT2G30350
fragaria_vesca	FvH4_3g40230 FvH4_3g40230
malus_domestica	MD03G1055200.v1.1 MD11G1056400.v1.1
prunus_persica	Prupe.1G103300_v2.0.a1 Prupe.1G103400_v2.0.a1 Prupe.1G106000_v2.0.a1 Prupe.1G108400_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.3G073500_v2.0.a1 Prupe.6G043600_v2.0.a1 Prupe.6G045800_v2.0.a1
pyrus_communis	pycom03g04370 pycom11g04670
rosa_chinensis	RchiOBHm_Chr5g0072441
rosa_laevigata	RLG00000036299
rosa_multiflora	Rmu_sc0008676.1_g000007
rosa_roxburghii	Rroxscaffold_1G00008770
rosa_rugosa	Rorug05G0418300
rosa_samantha	Rh5AG474700 Rh5BG494800 Rh5CG518800 Rh5DG506900
rosa_wichuraiana	Rw5G044080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccII	CGCG	1 cut(s)	308
AciI	CCGC	3 cut(s)	308, 373, 472
AclI	AACGTT	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	534
AjuI	GAANNNNNNNTTGG	4 cut(s)	112, 144, 508, 540
AleI	CACNNNNGTG	1 cut(s)	438
AluBI	AGCT	2 cut(s)	93, 360
AluI	AGCT	2 cut(s)	93, 360
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	2 cut(s)	108, 544
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	93, 148
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	451
AsuC2I	CCSGG	2 cut(s)	186, 187
AsuHPI	GGTGA	2 cut(s)	45, 452
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	80, 135
BccI	CCATC	2 cut(s)	212, 484
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	2 cut(s)	186, 187
BcoDI	GTCTC	2 cut(s)	108, 544
BisI	GCNGC	2 cut(s)	94, 149
BlsI	GCNGC	2 cut(s)	95, 150
Bme1390I	CCNGG	3 cut(s)	186, 187, 536
BmeT110I	CYCGRG	1 cut(s)	185
BmrFI	CCNGG	3 cut(s)	186, 187, 536
BmsI	GCATC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	186, 187
BsaHI	GRCGYC	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	185, 413, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	185, 413, 482
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	80, 135
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	2 cut(s)	108, 544
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	3 cut(s)	308, 373, 472
BspANI	GGCC	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	544
BssECI	CCNNGG	3 cut(s)	185, 413, 482
BssNI	GRCGYC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	81, 102, 406
Bst6I	CTCTTC	2 cut(s)	8, 547
BstACI	GRCGYC	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	346
BstDSI	CCRYGG	2 cut(s)	413, 482
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	108, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 381, 455
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	113, 348
BstSCI	CCNGG	3 cut(s)	184, 185, 534
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	80, 135
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	2 cut(s)	413, 482
BtsIMutI	CAGTG	3 cut(s)	86, 173, 411
Cac8I	GCNNGC	1 cut(s)	346
CfoI	GCGC	1 cut(s)	451
Cfr9I	CCCGGG	1 cut(s)	185
CseI	GACGC	2 cut(s)	407, 467
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	3 cut(s)	110, 345, 483
CviJI	RGCY	5 cut(s)	93, 190, 360, 369, 384
CviKI_1	RGCY	5 cut(s)	93, 190, 360, 369, 384
CviQI	GTAC	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	8, 547
EarI	CTCTTC	2 cut(s)	8, 547
Ecl136II	GAGCTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	362
Eco31I	GGTCTC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	3 cut(s)	113, 348, 486
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	3 cut(s)	109, 344, 482
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	2 cut(s)	94, 149
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	94, 149
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	2 cut(s)	94, 149
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	407, 467
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	113, 348, 486
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	139, 336, 399
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	2 cut(s)	45, 452
Hpy166II	GTNNAC	2 cut(s)	33, 409
Hpy8I	GTNNAC	2 cut(s)	33, 409
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	3 cut(s)	135, 248, 323
HpyCH4III	ACNGT	3 cut(s)	81, 102, 406
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	151, 223, 254, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 381, 455
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	113, 348, 486
HspAI	GCGC	1 cut(s)	449
LpnPI	CCDG	5 cut(s)	21, 199, 306, 521, 548
Lsp1109I	GCAGC	2 cut(s)	80, 135
LweI	GCATC	1 cut(s)	510
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	6 cut(s)	25, 134, 329, 331, 338, 534
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	1 cut(s)	233
MnlI	CCTC	2 cut(s)	304, 307
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	186, 187, 536
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	366, 381, 455
NciI	CCSGG	2 cut(s)	186, 187
NcoI	CCATGG	1 cut(s)	482
NlaIII	CATG	3 cut(s)	113, 348, 486
NspI	RCATGY	2 cut(s)	113, 348
NspV	TTCGAA	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	139, 336, 399
PkrI	GCNGC	2 cut(s)	95, 150
PsiI	TTATAA	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	362
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	94, 149
ScrFI	CCNGG	3 cut(s)	186, 187, 536
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	7 cut(s)	95, 127, 362, 392, 457, 525, 540
SfaNI	GCATC	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	214
SmaI	CCCGGG	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	438
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	308, 373, 472
SspI	AATATT	1 cut(s)	181
SstI	GAGCTC	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	184, 185, 534
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	3 cut(s)	81, 102, 406
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	214, 397
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	139, 336, 399
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	3 cut(s)	86, 180, 411
TseI	GCWGC	2 cut(s)	93, 148
TspDTI	ATGAA	2 cut(s)	300, 534
TspMI	CCCGGG	1 cut(s)	185
TspRI	CASTG	3 cut(s)	86, 180, 411
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	113, 348
XmaI	CCCGGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.