AT2G30530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010829
Physical Location & Seq
Forward (+)
13008856 .. 13011066
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30530.1

Sequence Viewer

Length: 1116 bp
ATGAACAAAGTCGACGAAATCGAGGATTTCAGATTCGAGGATCTCGAAATGGAGACGGAGAAAGATAAGGAAAGGATGATGACGCCGACGACGAGAATGTCTTATTCATCTTCGTCGTCTCCGTCTCCATCTTCGGCTTCATCATCTGCTGCGTCCTCTCTCGCTGCCAAGGCAATTCGAGCATCTTCTGCGCATAGAGACTCTTCTCTTTCTTCTGCTTACTCGTCTCCTTCTTCTGCTCCTGTTCCCACTCCTCCCAAGGAGGTGAATAAGGCTTATGAGTATACTTCTATGAAGAGTTTGAATGAACCAAAACGAGGCTTTTGGGGAAGTTTAGCTAGTAAAGCTAAGGCTTTTTTGGATGAGGATGATCCTAATCAGTTGCCTCAAAGTCCTAAGAGAATGGAGCAGAGCATACCTTCTGCGACAACTTCAGGAACTAAGGAAGCTGGTCAGACTGGTAGGAAAAGCGAGAATCCTTCATTACAGAGAAGATTAGATGCGATCACTTCATCGTTGAATTACATTGGTGGCACCATTGGTACTGTTGTTGAGGAGGGTATTACAGCTGTGGAGAATCGTACTGCAGGCATCATTCAAGAAACCCGTAAAAAGATTAAAAAAAAGCCAAGTCTTACAAGGAACCAGCAGAATCCTGAGATACAAGCTGATTTGGAGATTCAACTAAAGGCATCTCGCGACGTTGCAATGGCCATGGCTGCCAAGGCAAAGCTTTTACTTCGGGAGCTGAAGATGGTAAAGTCTGATCTGGCTTTTGCGAAGCAACGATGCGCACAGCTGGAAGAAGAAAATAAGGTTCTGAGGGAGAACCGTAGTGGCGACAGTCAGACAGATGACGATGATCTGGTGCGACTTCAACTGGAAACACTGTTAGCTGAGAAAGCACGGTTGGCTCATGAAAACTCGATATACACCCGCGAAAACCTCTATCTGAGAGGAGTCGTCGAATATCACCAGCTAACAATGCAAGATGTGGTCTACTTTGATGAGAAGACTGAAGAAGTAACGGAGGTATATCCCATTAATGTGTCTTCAATGTCTTCTTCATCAGATAACTCTTACAATCCAAATCCAAGTTTCTTGGAGCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

41.21

Weight (kDa)

5.59

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 97
Acc16I TGCGCA 2 cut(s) 192, 793
AccB1I GGYRCC 1 cut(s) 533
AccI GTMKAC 3 cut(s) 12, 284, 999
AccII CGCG 2 cut(s) 699, 939
AciI CCGC 1 cut(s) 937
AclWI GGATC 2 cut(s) 48, 365
AcoI YGGCCR 1 cut(s) 711
AcuI CTGAAG 3 cut(s) 417, 770, 1038
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 544, 583
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 6 cut(s) 304, 520, 599, 683, 878, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 893, 925
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 5 cut(s) 47, 123, 129, 192, 231
AlwI GGATC 2 cut(s) 48, 365
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 3 cut(s) 149, 164, 719
AseI ATTAAT 1 cut(s) 1044
AspLEI GCGC 2 cut(s) 193, 794
AsuHPI GGTGA 2 cut(s) 277, 965
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 1110
BbsI GAAGAC 3 cut(s) 1019, 1044, 1053
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 3 cut(s) 136, 151, 706
BccI CCATC 2 cut(s) 136, 748
BcoDI GTCTC 5 cut(s) 47, 123, 129, 192, 231
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 585
BisI GCNGC 3 cut(s) 150, 165, 720
BlsI GCNGC 3 cut(s) 151, 166, 721
BmiI GGNNCC 2 cut(s) 535, 644
BmsI GCATC 5 cut(s) 191, 490, 600, 701, 779
BpiI GAAGAC 3 cut(s) 1019, 1044, 1053
Bpu10I CCTNAGC 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 4 cut(s) 168, 258, 714, 723
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 463, 885
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 168, 258, 714, 723
BseGI GGATG 3 cut(s) 81, 367, 373
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 4 cut(s) 648, 812, 888, 944
BseNI ACTGG 2 cut(s) 463, 885
BseRI GAGGAG 3 cut(s) 243, 569, 972
BseXI GCAGC 3 cut(s) 136, 151, 706
Bsh1236I CGCG 2 cut(s) 699, 939
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 1110
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 5 cut(s) 47, 123, 129, 192, 231
BsmBI CGTCTC 4 cut(s) 47, 123, 129, 231
BsnI GGCC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 1110
Bsp143I GATC 5 cut(s) 40, 370, 504, 766, 862
Bsp19I CCATGG 1 cut(s) 714
Bsp68I TCGCGA 1 cut(s) 699
BspACI CCGC 1 cut(s) 937
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 4 cut(s) 649, 813, 889, 945
BspFNI CGCG 2 cut(s) 699, 939
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 535, 644
BspMAI CTGCAG 1 cut(s) 589
BspPI GGATC 2 cut(s) 48, 365
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 2 cut(s) 463, 885
BssECI CCNNGG 4 cut(s) 168, 258, 714, 723
BssMI GATC 5 cut(s) 40, 370, 504, 766, 862
BssNAI GTATAC 1 cut(s) 285
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 168, 258, 714, 723
Bst1107I GTATAC 1 cut(s) 285
Bst4CI ACNGT 5 cut(s) 547, 833, 845, 891, 909
Bst6I CTCTTC 2 cut(s) 208, 290
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 7 cut(s) 348, 396, 441, 657, 821, 897, 953
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 3 cut(s) 81, 367, 373
BstFNI CGCG 2 cut(s) 699, 939
BstHHI GCGC 2 cut(s) 193, 794
BstKTI GATC 5 cut(s) 43, 373, 507, 769, 865
BstMAI GTCTC 5 cut(s) 47, 123, 129, 192, 231
BstMBI GATC 5 cut(s) 40, 370, 504, 766, 862
BstMWI GCNNNNNNNGC 9 cut(s) 170, 179, 188, 344, 719, 725, 902, 911, 985
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 2 cut(s) 699, 939
BstV1I GCAGC 3 cut(s) 136, 151, 706
BstV2I GAAGAC 3 cut(s) 1019, 1044, 1053
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 713
BtgI CCRYGG 1 cut(s) 714
BtsCI GGATG 3 cut(s) 81, 367, 373
BtsIMutI CAGTG 1 cut(s) 887
BtuMI TCGCGA 1 cut(s) 699
Cac8I GCNNGC 1 cut(s) 589
CciI TCATGA 1 cut(s) 916
CfoI GCGC 2 cut(s) 193, 794
CseI GACGC 2 cut(s) 91, 141
Csp6I GTAC 2 cut(s) 543, 582
CviAII CATG 2 cut(s) 715, 917
CviQI GTAC 2 cut(s) 543, 582
DdeI CTNAG 7 cut(s) 348, 396, 441, 657, 821, 897, 953
DpnI GATC 5 cut(s) 42, 372, 506, 768, 864
DpnII GATC 5 cut(s) 40, 370, 504, 766, 862
DrdI GACNNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 208, 290
EarI CTCTTC 2 cut(s) 208, 290
Ecl136II GAGCTC 1 cut(s) 1108
Eco130I CCWWGG 4 cut(s) 168, 258, 714, 723
Eco24I GRGCYC 1 cut(s) 1110
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 3 cut(s) 417, 770, 1038
EcoICRI GAGCTC 1 cut(s) 1108
EcoT14I CCWWGG 4 cut(s) 168, 258, 714, 723
EcoT38I GRGCYC 1 cut(s) 1110
ErhI CCWWGG 4 cut(s) 168, 258, 714, 723
Esp3I CGTCTC 4 cut(s) 47, 123, 129, 231
FaeI CATG 2 cut(s) 718, 920
FaiI YATR 9 cut(s) 195, 279, 285, 293, 416, 716, 918, 931, 1036
FatI CATG 2 cut(s) 714, 916
FauI CCCGC 1 cut(s) 944
FblI GTMKAC 3 cut(s) 12, 284, 999
Fnu4HI GCNGC 3 cut(s) 150, 165, 720
FokI GGATG 3 cut(s) 88, 374, 380
FriOI GRGCYC 1 cut(s) 1110
Fsp4HI GCNGC 3 cut(s) 150, 165, 720
FspAI RTGCGCAY 1 cut(s) 793
FspBI CTAG 1 cut(s) 339
FspI TGCGCA 2 cut(s) 192, 793
GlaI GCGC 2 cut(s) 192, 793
GluI GCNGC 3 cut(s) 150, 165, 720
HaeIII GGCC 1 cut(s) 713
HgaI GACGC 2 cut(s) 91, 141
HhaI GCGC 2 cut(s) 193, 794
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 718, 920
Hin6I GCGC 2 cut(s) 191, 792
HinP1I GCGC 2 cut(s) 191, 792
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 7 cut(s) 33, 200, 475, 577, 652, 679, 960
HphI GGTGA 2 cut(s) 277, 965
Hpy166II GTNNAC 3 cut(s) 13, 285, 1000
Hpy188I TCNGA 7 cut(s) 32, 456, 766, 822, 849, 954, 1072
Hpy188III TCNNGA 7 cut(s) 44, 435, 599, 656, 698, 743, 917
Hpy8I GTNNAC 3 cut(s) 13, 285, 1000
Hpy99I CGWCG 6 cut(s) 17, 91, 94, 118, 704, 968
HpyAV CCTTC 3 cut(s) 240, 429, 489
HpyCH4III ACNGT 5 cut(s) 547, 833, 845, 891, 909
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 3 cut(s) 587, 707, 988
HpyF10VI GCNNNNNNNGC 9 cut(s) 170, 179, 188, 344, 719, 725, 902, 911, 985
HpyF3I CTNAG 7 cut(s) 348, 396, 441, 657, 821, 897, 953
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 718, 920
HspAI GCGC 2 cut(s) 191, 792
Kzo9I GATC 5 cut(s) 40, 370, 504, 766, 862
LmnI GCTCC 4 cut(s) 244, 406, 745, 1105
Lsp1109I GCAGC 3 cut(s) 136, 151, 706
LweI GCATC 5 cut(s) 191, 490, 600, 701, 779
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 1 cut(s) 1024
MalI GATC 5 cut(s) 42, 372, 506, 768, 864
MboI GATC 5 cut(s) 40, 370, 504, 766, 862
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 1110
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 2 cut(s) 174, 520
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 2 cut(s) 194, 969
Mox20I TGGCCA 1 cut(s) 713
MscI TGGCCA 1 cut(s) 713
MseI TTAA 2 cut(s) 618, 1044
MslI CAYNNNNRTG 1 cut(s) 1046
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 2 cut(s) 569, 799
MvnI CGCG 2 cut(s) 699, 939
MwoI GCNNNNNNNGC 9 cut(s) 170, 179, 188, 344, 719, 725, 902, 911, 985
NcoI CCATGG 1 cut(s) 714
NdeII GATC 5 cut(s) 40, 370, 504, 766, 862
NlaIII CATG 2 cut(s) 718, 920
NlaIV GGNNCC 2 cut(s) 535, 644
NruI TCGCGA 1 cut(s) 699
NsbI TGCGCA 2 cut(s) 192, 793
PagI TCATGA 1 cut(s) 916
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 42, 89, 119
PfeI GAWTC 5 cut(s) 33, 475, 577, 652, 679
PkrI GCNGC 3 cut(s) 151, 166, 721
PleI GAGTC 2 cut(s) 194, 968
PpsI GAGTC 2 cut(s) 194, 968
PshBI ATTAAT 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 1110
PspN4I GGNNCC 2 cut(s) 535, 644
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 1 cut(s) 40
PvuII CAGCTG 2 cut(s) 569, 799
RruI TCGCGA 1 cut(s) 699
RsaI GTAC 2 cut(s) 544, 583
RsaNI GTAC 2 cut(s) 543, 582
RseI CAYNNNNRTG 1 cut(s) 1046
SacI GAGCTC 1 cut(s) 1110
SalI GTCGAC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 618, 1044
SatI GCNGC 3 cut(s) 150, 165, 720
Sau3AI GATC 5 cut(s) 40, 370, 504, 766, 862
SchI GAGTC 2 cut(s) 194, 969
SduI GDGCHC 1 cut(s) 1110
SfaNI GCATC 5 cut(s) 191, 490, 600, 701, 779
SfcI CTRYAG 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 1046
Sse9I AATT 2 cut(s) 174, 520
SsiI CCGC 1 cut(s) 937
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 1110
StyI CCWWGG 4 cut(s) 168, 258, 714, 723
TaaI ACNGT 5 cut(s) 547, 833, 845, 891, 909
TaiI ACGT 1 cut(s) 705
TaqI TCGA 7 cut(s) 12, 21, 36, 45, 178, 926, 966
TasI AATT 2 cut(s) 174, 520
TfiI GAWTC 5 cut(s) 33, 475, 577, 652, 679
Tru1I TTAA 2 cut(s) 618, 1044
Tru9I TTAA 2 cut(s) 618, 1044
TscAI CASTG 1 cut(s) 894
TseI GCWGC 3 cut(s) 149, 164, 719
TspDTI ATGAA 9 cut(s) 17, 96, 129, 308, 321, 471, 501, 933, 1056
TspGWI ACGGA 3 cut(s) 71, 111, 1043
TspRI CASTG 1 cut(s) 894
VspI ATTAAT 1 cut(s) 1044
XmiI GTMKAC 3 cut(s) 12, 284, 999
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.