RLG00000036420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010829
Physical Location & Seq
Reverse (-)
80384339 .. 80386719
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036420

Sequence Viewer

Length: 1158 bp
ATGGCGTATAGGAGGAGGCAGCAGGTGTCGGGGTTTCGATTCGAAGAAGGAGAAGAATCAAGAAATCGAAATTCAATGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCTGGGGACGATTCGCTTGCCGCCAAAGCGATAAGAGCTTCTTCGGCTCATCGGGACTCGTCTCTCTCCTCTGCTTATGCTGCTCGAGGCGTTCATTCTGGTTCTCCTCTCTCCCCTTCAGCTCCTCAGTTTTCGAAATCAATCCCCACCGCCGCAACAACTGCTGCTACTTCTCTTCCCTCTCCCACCCAGCCACATGAGTATACATCGATTAAGAATTTGAATGAATCCAAAAATGGGTTCTGGAGTGTTCTCGCTAGAAAAGCCAAAGCCATTCTCGACGACGATGAAGATGATAATGTAGCTCAAACGTATGATTCTCCTGGAAGAAAACGGGTGGAAACGCCCCCTACACTGACTAGGGGTAAGAATTATGATCCAAATCCATCTGTTGATAGCCGTGGAAAGACAGAAAATCCCACATTGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACTATTGGGAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGACATTATTCAAGAAACTCGTAAGCATATCAGGAAAAAGCCGCAAAATCAGGCACCAAAATCAGAGTATCAGTCGCTAGCTGACCTTGAACTTCAATTGAAGGCATCTCGCGACGTTGCTATGGCAATGGCTGCAAAAGCAAAACTTCTTCTTCGGGAATTGAAAACTGTAAAAGCAGACCTTGCTTTTGCAAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAGCAAAATCCTTCGGGAGAATCGTGATAGGGGAGAAAGCCCTGAAGACGATGATATGATACGGCTTCAATTGGAAACACTTTTGGCAGAAAAGGCAAGACTGGCACATGAAAATTCAGCTTATGCACGTGAAAATCGCTTCTTAAGGGAGGTTGTTGAATATCACCAGCTCACGATGCAGGATGTTATATACTTGGATGAGGGAACTGAAGAAGTTACTGAAGTTTATCCCATCAAGGTCATCCCTTCTCAGTCTTCACCACCCTCTGAAGTACGTGGTGTCTCTGCAAGTCCTATCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

42.41

Weight (kDa)

5.74

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 685
AccI GTMKAC 1 cut(s) 308
AccII CGCG 1 cut(s) 744
AciI CCGC 9 cut(s) 80, 83, 89, 95, 101, 126, 255, 258, 674
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 3 cut(s) 70, 322, 967
AcuI CTGAAG 5 cut(s) 207, 918, 1083, 1095, 1143
AcvI CACGTG 1 cut(s) 983
AfaI GTAC 2 cut(s) 610, 1128
AfiI CCNNNNNNNGG 1 cut(s) 342
AflII CTTAAG 1 cut(s) 997
AgsI TTSAA 9 cut(s) 75, 328, 644, 722, 728, 733, 796, 923, 1013
AjnI CCWGG 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 7 cut(s) 143, 227, 410, 713, 844, 974, 1024
AluI AGCT 7 cut(s) 143, 227, 410, 713, 844, 974, 1024
Alw21I GWGCWC 1 cut(s) 841
Alw26I GTCTC 2 cut(s) 171, 1141
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 189
ApeKI GCWGC 4 cut(s) 19, 185, 269, 764
ApoI RAATTY 3 cut(s) 70, 322, 967
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AsuHPI GGTGA 2 cut(s) 1010, 1104
AsuII TTCGAA 2 cut(s) 42, 239
AsuNHI GCTAGC 1 cut(s) 709
AvaI CYCGRG 1 cut(s) 189
BanI GGYRCC 1 cut(s) 685
BbrPI CACGTG 1 cut(s) 983
BbsI GAAGAC 2 cut(s) 906, 1101
Bbv12I GWGCWC 1 cut(s) 841
BbvI GCAGC 4 cut(s) 31, 172, 256, 751
BccI CCATC 2 cut(s) 499, 1094
BceAI ACGGC 2 cut(s) 489, 932
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 171, 1141
BfaI CTAG 3 cut(s) 363, 465, 710
BfmI CTRYAG 1 cut(s) 630
BfrI CTTAAG 1 cut(s) 997
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 8 cut(s) 20, 81, 126, 186, 258, 270, 674, 765
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 8 cut(s) 21, 82, 127, 187, 259, 271, 675, 766
Bme1390I CCNGG 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 746, 1020
BmtI GCTAGC 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 906, 1101
BpmI CTGGAG 2 cut(s) 370, 866
Bpu1102I GCTNAGC 1 cut(s) 840
Bpu14I TTCGAA 2 cut(s) 42, 239
Bsa29I ATCGAT 1 cut(s) 314
BsaAI YACGTR 2 cut(s) 983, 1130
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 505
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 960
Bse3DI GCAATG 2 cut(s) 527, 765
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 4 cut(s) 557, 1042, 1057, 1095
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 2 cut(s) 527, 765
BseMII CTCAG 3 cut(s) 245, 854, 1118
BseNI ACTGG 1 cut(s) 960
BseRI GAGGAG 5 cut(s) 28, 163, 201, 219, 614
BseXI GCAGC 4 cut(s) 31, 172, 256, 751
BseYI CCCAGC 2 cut(s) 107, 294
Bsh1236I CGCG 1 cut(s) 744
BshNI GGYRCC 1 cut(s) 685
BshVI ATCGAT 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 841
BsiHKCI CYCGRG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 125, 173
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 171, 1141
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 2 cut(s) 125, 173
BsoBI CYCGRG 1 cut(s) 189
Bsp119I TTCGAA 2 cut(s) 42, 239
Bsp1286I GDGCHC 1 cut(s) 841
Bsp143I GATC 1 cut(s) 481
Bsp1720I GCTNAGC 1 cut(s) 840
Bsp68I TCGCGA 1 cut(s) 744
BspACI CCGC 9 cut(s) 80, 83, 89, 95, 101, 126, 255, 258, 674
BspCNI CTCAG 3 cut(s) 244, 853, 1117
BspDI ATCGAT 1 cut(s) 314
BspFNI CGCG 1 cut(s) 744
BspLI GGNNCC 1 cut(s) 687
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 476
BspT104I TTCGAA 2 cut(s) 42, 239
BspT107I GGYRCC 1 cut(s) 685
BspTI CTTAAG 1 cut(s) 997
BsrDI GCAATG 2 cut(s) 527, 765
BsrI ACTGG 1 cut(s) 960
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 1 cut(s) 481
BssNAI GTATAC 1 cut(s) 309
Bst1107I GTATAC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 997
BstAPI GCANNNNNTGC 3 cut(s) 266, 764, 815
BstBAI YACGTR 2 cut(s) 983, 1130
BstBI TTCGAA 2 cut(s) 42, 239
BstC8I GCNNGC 2 cut(s) 123, 711
BstDEI CTNAG 4 cut(s) 231, 595, 840, 1104
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 4 cut(s) 557, 1042, 1057, 1095
BstFNI CGCG 1 cut(s) 744
BstKTI GATC 1 cut(s) 484
BstMAI GTCTC 2 cut(s) 171, 1141
BstMBI GATC 1 cut(s) 481
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 1 cut(s) 744
BstV1I GCAGC 4 cut(s) 31, 172, 256, 751
BstV2I GAAGAC 2 cut(s) 906, 1101
BstZ17I GTATAC 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 314
BsuTUI ATCGAT 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 505
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 4 cut(s) 557, 1042, 1057, 1095
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 3 cut(s) 458, 580, 627
BtuMI TCGCGA 1 cut(s) 744
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 123, 711
ClaI ATCGAT 1 cut(s) 314
Csp6I GTAC 2 cut(s) 609, 1127
CviAII CATG 2 cut(s) 302, 962
CviQI GTAC 2 cut(s) 609, 1127
DdeI CTNAG 4 cut(s) 231, 595, 840, 1104
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
EciI GGCGGA 4 cut(s) 98, 104, 110, 116
Eco57I CTGAAG 5 cut(s) 207, 918, 1083, 1095, 1143
Eco72I CACGTG 1 cut(s) 983
Eco88I CYCGRG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 427
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 305, 965
FalI AAGNNNNNCTT 6 cut(s) 130, 162, 762, 794, 798, 830
FaqI GGGAC 2 cut(s) 125, 173
FatI CATG 2 cut(s) 301, 961
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 8 cut(s) 20, 81, 126, 186, 258, 270, 674, 765
FokI GGATG 4 cut(s) 544, 1049, 1064, 1082
Fsp4HI GCNGC 8 cut(s) 20, 81, 126, 186, 258, 270, 674, 765
FspBI CTAG 3 cut(s) 363, 465, 710
GluI GCNGC 8 cut(s) 20, 81, 126, 186, 258, 270, 674, 765
GsaI CCCAGC 2 cut(s) 111, 298
GsuI CTGGAG 2 cut(s) 370, 866
Hin1II CATG 2 cut(s) 305, 965
HinfI GANTC 7 cut(s) 39, 56, 116, 161, 332, 422, 874
HphI GGTGA 2 cut(s) 1010, 1104
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 697, 1123
Hpy8I GTNNAC 1 cut(s) 309
Hpy99I CGWCG 3 cut(s) 389, 392, 749
HpyAV CCTTC 6 cut(s) 41, 231, 529, 727, 875, 1110
HpyCH4III ACNGT 1 cut(s) 802
HpyCH4IV ACGT 4 cut(s) 416, 747, 982, 1129
HpyCH4V TGCA 8 cut(s) 532, 548, 632, 767, 824, 980, 1033, 1142
HpyF3I CTNAG 4 cut(s) 231, 595, 840, 1104
HpySE526I ACGT 4 cut(s) 416, 747, 982, 1129
Hsp92II CATG 2 cut(s) 305, 965
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 2 cut(s) 232, 829
Lsp1109I GCAGC 4 cut(s) 31, 172, 256, 751
LweI GCATC 2 cut(s) 746, 1020
MaeI CTAG 3 cut(s) 363, 465, 710
MaeII ACGT 4 cut(s) 416, 747, 982, 1129
MaeIII GTNAC 1 cut(s) 1069
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MfeI CAATTG 2 cut(s) 728, 923
MhlI GDGCHC 1 cut(s) 841
MluCI AATT 8 cut(s) 70, 322, 475, 565, 728, 791, 923, 967
MlyI GAGTC 1 cut(s) 155
MseI TTAA 3 cut(s) 318, 564, 998
MspA1I CMGCKG 1 cut(s) 844
MspCI CTTAAG 1 cut(s) 997
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 2 cut(s) 728, 923
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 1 cut(s) 744
NdeII GATC 1 cut(s) 481
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 2 cut(s) 305, 965
NlaIV GGNNCC 1 cut(s) 687
NruI TCGCGA 1 cut(s) 744
NspV TTCGAA 2 cut(s) 42, 239
PaeR7I CTCGAG 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PfeI GAWTC 6 cut(s) 39, 56, 116, 332, 422, 874
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 8 cut(s) 21, 82, 127, 187, 259, 271, 675, 766
PleI GAGTC 1 cut(s) 155
PmaCI CACGTG 1 cut(s) 983
PmlI CACGTG 1 cut(s) 983
PpsI GAGTC 1 cut(s) 155
Ppu21I YACGTR 2 cut(s) 983, 1130
Psp6I CCWGG 1 cut(s) 427
PspCI CACGTG 1 cut(s) 983
PspFI CCCAGC 2 cut(s) 107, 294
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 687
PspXI VCTCGAGB 1 cut(s) 189
PstI CTGCAG 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 844
RruI TCGCGA 1 cut(s) 744
RsaI GTAC 2 cut(s) 610, 1128
RsaNI GTAC 2 cut(s) 609, 1127
SaqAI TTAA 3 cut(s) 318, 564, 998
SatI GCNGC 8 cut(s) 20, 81, 126, 186, 258, 270, 674, 765
Sau3AI GATC 1 cut(s) 481
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 841
SfaNI GCATC 2 cut(s) 746, 1020
SfcI CTRYAG 1 cut(s) 630
Sfr274I CTCGAG 1 cut(s) 189
SfuI TTCGAA 2 cut(s) 42, 239
SlaI CTCGAG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 189, 997
SmoI CTYRAG 2 cut(s) 189, 997
Sse9I AATT 8 cut(s) 70, 322, 475, 565, 728, 791, 923, 967
SsiI CCGC 9 cut(s) 80, 83, 89, 95, 101, 126, 255, 258, 674
SspMI CTAG 3 cut(s) 363, 465, 710
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 802
TaiI ACGT 4 cut(s) 419, 750, 985, 1132
TaqI TCGA 7 cut(s) 37, 42, 67, 190, 239, 314, 384
TasI AATT 8 cut(s) 70, 322, 475, 565, 728, 791, 923, 967
TauI GCSGC 4 cut(s) 83, 128, 260, 676
TfiI GAWTC 6 cut(s) 39, 56, 116, 332, 422, 874
Tru1I TTAA 3 cut(s) 318, 564, 998
Tru9I TTAA 3 cut(s) 318, 564, 998
TscAI CASTG 3 cut(s) 465, 580, 634
TseI GCWGC 4 cut(s) 19, 185, 269, 764
TspDTI ATGAA 4 cut(s) 188, 345, 408, 978
TspRI CASTG 3 cut(s) 465, 580, 634
Vha464I CTTAAG 1 cut(s) 997
XapI RAATTY 3 cut(s) 70, 322, 967
XhoI CTCGAG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 3 cut(s) 363, 465, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.