RchiOBHm_Chr5g0073821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010829
Physical Location & Seq
Reverse (-)
79868418 .. 79871993
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34870

Sequence Viewer

Length: 1161 bp
ATGGCGTATAGGAGGAGGCAGCAGGTGTCGGGGTTTCGATTCGAAGAGGGAGAAGAATCAAGAAATCGAAATTCAATTATTCCGCCGTCGCCGTCGTCGTCGGCGGAGGCGGGGGACGATTCGCTTGCCGCCAAAGCGATAAGAGCTTCTTCGGCTCATCGGGACTCGTCTCTCTCCTCTGCTTATGCTGCTCGAGGCGTTCATTCTGGTTCTCCTCTCTCCCCTTCAGCTCCTCAGTTTTCGAAACCAATCCCCACCGCCGCAACAACTGCTGCTACTTCTCTTCCCTCTCCCACCCAGCCACATGAGTATACATCGATGAAGAATTTGAATCAATCCAAAAATGGGTTCTGGAGTGTTCTCGCTAGAAAAGCCAAAGCCATTATCGACGACGACGAAGATGATAATGTAGCTCCAACGTATGATTCTCCTGGAAGAAAAAGGGTGGAAACGCCCCCTACACTGACTAGGGATAAGAATTATGATCCAAATCCATCTGTTGAAAGCCGTGGAAAGACAGAAAATCCCACATTGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACTATTGGGAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGACATTATTCAAGAAACTCGTAAGCATATCAGGAAAAAGCCGCAAAATCAGGCACCAAAATCAGAGTATCAGTCGCTAGCTGACCTCGAACTTCAATTGAAGGCATCTCGCGACGTTGCTATGGCAATGGCTGCAAAAGCAAAACTTCTTCTTCGGGAATTGAAGACTGTAAAAGCAGACCTTGCTTTTGCAAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAGCAAAATTCTTCGGGAGAATCGTGATAGGGGAGAAAGCCCTGAAGACGATGATTTGATACGGCTTCAATTGGAAACACTTTTGGCAGAAAAGGCAAGACTGGCACATGAAAATTCAGTTTATGCACGTGAAAATCGCTTCTTAAGGGAGGTTGTTGAATATCACCAGCTCACGATGCAGGATGTTATATACTTGGATGAGGGAACTGAAGAAGTTACTGAAGTTTATCCCATCAAGGTCATCCCTTCTCAGTCTTCACCACCCTCTGAAGTACGTGGTGTCTCTGCAAGTCCTACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

42.54

Weight (kDa)

6.18

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 688
AccI GTMKAC 1 cut(s) 311
AccII CGCG 1 cut(s) 747
AciI CCGC 7 cut(s) 83, 104, 110, 129, 258, 261, 677
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 4 cut(s) 70, 325, 864, 970
AcuI CTGAAG 5 cut(s) 210, 921, 1086, 1098, 1146
AcvI CACGTG 1 cut(s) 986
AfaI GTAC 2 cut(s) 613, 1131
AfiI CCNNNNNNNGG 1 cut(s) 345
AflII CTTAAG 1 cut(s) 1000
AgsI TTSAA 9 cut(s) 75, 331, 503, 647, 731, 736, 799, 926, 1016
AjnI CCWGG 1 cut(s) 430
AjuI GAANNNNNNNTTGG 4 cut(s) 332, 364, 409, 441
AluBI AGCT 6 cut(s) 146, 230, 413, 716, 847, 1027
AluI AGCT 6 cut(s) 146, 230, 413, 716, 847, 1027
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 2 cut(s) 174, 1144
AlwI GGATC 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 192
ApeKI GCWGC 4 cut(s) 19, 188, 272, 767
ApoI RAATTY 4 cut(s) 70, 325, 864, 970
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AsuHPI GGTGA 2 cut(s) 1013, 1107
AsuII TTCGAA 2 cut(s) 42, 242
AsuNHI GCTAGC 1 cut(s) 712
AvaI CYCGRG 1 cut(s) 192
BanI GGYRCC 1 cut(s) 688
BbrPI CACGTG 1 cut(s) 986
BbsI GAAGAC 3 cut(s) 806, 909, 1104
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 4 cut(s) 31, 175, 259, 754
BccI CCATC 2 cut(s) 502, 1097
BceAI ACGGC 4 cut(s) 70, 76, 492, 935
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 174, 1144
BfaI CTAG 3 cut(s) 366, 468, 713
BfmI CTRYAG 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 1000
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 7 cut(s) 20, 129, 189, 261, 273, 677, 768
BlpI GCTNAGC 1 cut(s) 843
BlsI GCNGC 7 cut(s) 21, 130, 190, 262, 274, 678, 769
Bme1390I CCNGG 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 749, 1023
BmtI GCTAGC 1 cut(s) 716
BpiI GAAGAC 3 cut(s) 806, 909, 1104
BpmI CTGGAG 2 cut(s) 373, 869
Bpu1102I GCTNAGC 1 cut(s) 843
Bpu14I TTCGAA 2 cut(s) 42, 242
Bsa29I ATCGAT 1 cut(s) 317
BsaAI YACGTR 2 cut(s) 986, 1133
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 963
Bse3DI GCAATG 2 cut(s) 530, 768
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 4 cut(s) 560, 1045, 1060, 1098
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 2 cut(s) 530, 768
BseMII CTCAG 3 cut(s) 248, 857, 1121
BseNI ACTGG 1 cut(s) 963
BseRI GAGGAG 5 cut(s) 28, 166, 204, 222, 617
BseXI GCAGC 4 cut(s) 31, 175, 259, 754
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 747
BshNI GGYRCC 1 cut(s) 688
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 128, 176
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 174, 1144
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 2 cut(s) 128, 176
BsoBI CYCGRG 1 cut(s) 192
Bsp119I TTCGAA 2 cut(s) 42, 242
Bsp1286I GDGCHC 1 cut(s) 844
Bsp143I GATC 1 cut(s) 484
Bsp1720I GCTNAGC 1 cut(s) 843
Bsp68I TCGCGA 1 cut(s) 747
BspACI CCGC 7 cut(s) 83, 104, 110, 129, 258, 261, 677
BspCNI CTCAG 3 cut(s) 247, 856, 1120
BspDI ATCGAT 1 cut(s) 317
BspFNI CGCG 1 cut(s) 747
BspLI GGNNCC 1 cut(s) 690
BspMAI CTGCAG 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 716
BspPI GGATC 1 cut(s) 479
BspT104I TTCGAA 2 cut(s) 42, 242
BspT107I GGYRCC 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 1000
BsrDI GCAATG 2 cut(s) 530, 768
BsrI ACTGG 1 cut(s) 963
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 1 cut(s) 484
BssNAI GTATAC 1 cut(s) 312
Bst1107I GTATAC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 805
Bst6I CTCTTC 2 cut(s) 39, 288
BstAFI CTTAAG 1 cut(s) 1000
BstAPI GCANNNNNTGC 3 cut(s) 269, 767, 818
BstBAI YACGTR 2 cut(s) 986, 1133
BstBI TTCGAA 2 cut(s) 42, 242
BstC8I GCNNGC 2 cut(s) 126, 714
BstDEI CTNAG 4 cut(s) 234, 598, 843, 1107
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 4 cut(s) 560, 1045, 1060, 1098
BstFNI CGCG 1 cut(s) 747
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 2 cut(s) 174, 1144
BstMBI GATC 1 cut(s) 484
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 4 cut(s) 31, 175, 259, 754
BstV2I GAAGAC 3 cut(s) 806, 909, 1104
BstZ17I GTATAC 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 850
BtsCI GGATG 4 cut(s) 560, 1045, 1060, 1098
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 461, 583, 630
BtuMI TCGCGA 1 cut(s) 747
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 126, 714
ClaI ATCGAT 1 cut(s) 317
Csp6I GTAC 2 cut(s) 612, 1130
CviAII CATG 2 cut(s) 305, 965
CviQI GTAC 2 cut(s) 612, 1130
DdeI CTNAG 4 cut(s) 234, 598, 843, 1107
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 39, 288
EarI CTCTTC 2 cut(s) 39, 288
EciI GGCGGA 2 cut(s) 72, 119
Eco57I CTGAAG 5 cut(s) 210, 921, 1086, 1098, 1146
Eco72I CACGTG 1 cut(s) 986
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 2 cut(s) 308, 968
FalI AAGNNNNNCTT 6 cut(s) 133, 165, 765, 797, 801, 833
FaqI GGGAC 2 cut(s) 128, 176
FatI CATG 2 cut(s) 304, 964
FauI CCCGC 1 cut(s) 103
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 7 cut(s) 20, 129, 189, 261, 273, 677, 768
FokI GGATG 4 cut(s) 547, 1052, 1067, 1085
Fsp4HI GCNGC 7 cut(s) 20, 129, 189, 261, 273, 677, 768
FspBI CTAG 3 cut(s) 366, 468, 713
GluI GCNGC 7 cut(s) 20, 129, 189, 261, 273, 677, 768
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 373, 869
Hin1II CATG 2 cut(s) 308, 968
HinfI GANTC 7 cut(s) 39, 56, 119, 164, 331, 425, 877
HphI GGTGA 2 cut(s) 1013, 1107
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 700, 1126
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 8 cut(s) 91, 97, 100, 103, 392, 395, 398, 752
HpyAV CCTTC 4 cut(s) 234, 532, 730, 1113
HpyCH4III ACNGT 1 cut(s) 805
HpyCH4IV ACGT 4 cut(s) 419, 750, 985, 1132
HpyCH4V TGCA 8 cut(s) 535, 551, 635, 770, 827, 983, 1036, 1145
HpyF3I CTNAG 4 cut(s) 234, 598, 843, 1107
HpySE526I ACGT 4 cut(s) 419, 750, 985, 1132
Hsp92II CATG 2 cut(s) 308, 968
Kzo9I GATC 1 cut(s) 484
LmnI GCTCC 3 cut(s) 235, 418, 832
Lsp1109I GCAGC 4 cut(s) 31, 175, 259, 754
LweI GCATC 2 cut(s) 749, 1023
MaeI CTAG 3 cut(s) 366, 468, 713
MaeII ACGT 4 cut(s) 419, 750, 985, 1132
MaeIII GTNAC 1 cut(s) 1072
MalI GATC 1 cut(s) 486
MboI GATC 1 cut(s) 484
MfeI CAATTG 2 cut(s) 731, 926
MhlI GDGCHC 1 cut(s) 844
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 440
MseI TTAA 2 cut(s) 567, 1001
MspA1I CMGCKG 1 cut(s) 847
MspCI CTTAAG 1 cut(s) 1000
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 2 cut(s) 731, 926
MvaI CCWGG 1 cut(s) 432
MvnI CGCG 1 cut(s) 747
NdeII GATC 1 cut(s) 484
NheI GCTAGC 1 cut(s) 712
NlaIII CATG 2 cut(s) 308, 968
NlaIV GGNNCC 1 cut(s) 690
NruI TCGCGA 1 cut(s) 747
NspV TTCGAA 2 cut(s) 42, 242
PaeR7I CTCGAG 1 cut(s) 192
PaqCI CACCTGC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 3 cut(s) 95, 393, 877
PfeI GAWTC 6 cut(s) 39, 56, 119, 331, 425, 877
PfoI TCCNGGA 1 cut(s) 430
PkrI GCNGC 7 cut(s) 21, 130, 190, 262, 274, 678, 769
PleI GAGTC 1 cut(s) 158
PmaCI CACGTG 1 cut(s) 986
PmlI CACGTG 1 cut(s) 986
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 2 cut(s) 986, 1133
Psp6I CCWGG 1 cut(s) 430
PspCI CACGTG 1 cut(s) 986
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 690
PspXI VCTCGAGB 1 cut(s) 192
PstI CTGCAG 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 847
RruI TCGCGA 1 cut(s) 747
RsaI GTAC 2 cut(s) 613, 1131
RsaNI GTAC 2 cut(s) 612, 1130
SaqAI TTAA 2 cut(s) 567, 1001
SatI GCNGC 7 cut(s) 20, 129, 189, 261, 273, 677, 768
Sau3AI GATC 1 cut(s) 484
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 2 cut(s) 749, 1023
SfcI CTRYAG 1 cut(s) 633
Sfr274I CTCGAG 1 cut(s) 192
SfuI TTCGAA 2 cut(s) 42, 242
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 192, 1000
SmoI CTYRAG 2 cut(s) 192, 1000
SsiI CCGC 7 cut(s) 83, 104, 110, 129, 258, 261, 677
SspMI CTAG 3 cut(s) 366, 468, 713
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 805
TaiI ACGT 4 cut(s) 422, 753, 988, 1135
TaqI TCGA 8 cut(s) 37, 42, 67, 193, 242, 317, 387, 723
TauI GCSGC 3 cut(s) 131, 263, 679
TfiI GAWTC 6 cut(s) 39, 56, 119, 331, 425, 877
Tru1I TTAA 2 cut(s) 567, 1001
Tru9I TTAA 2 cut(s) 567, 1001
TscAI CASTG 3 cut(s) 468, 583, 637
TseI GCWGC 4 cut(s) 19, 188, 272, 767
TspDTI ATGAA 3 cut(s) 191, 335, 981
TspRI CASTG 3 cut(s) 468, 583, 637
Vha464I CTTAAG 1 cut(s) 1000
XapI RAATTY 4 cut(s) 70, 325, 864, 970
XhoI CTCGAG 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 311
XspI CTAG 3 cut(s) 366, 468, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.