Rw5G044990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010829
Physical Location & Seq
Reverse (-)
78770715 .. 78773651
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044990.1

Sequence Viewer

Length: 762 bp
ATGGCGTATAGGAGGAGGCAGCAGGTGTCGGGGTTTCGATTCGAAGAGGGAGAAGAATCAAGAAATCGAAATTCAATTATTCCGCCGTCGTCGTCGTCGGCGGCGGAGGCGGGGGACGATTCGCTTGCCGCCAAAGCGATAAGAGCTTCTTCGGCTCATCGGGACTCGTCTCTCTCCTCTGCTTATGCTGCTCGAGGCGTTCATTCTGGCTCTCCTCTCTCCCCTTCACCTCCTCAGTTTTCGAAATCAATCCCCACCGCCGCAGCAACTGCCGCTACTTCTCTTCCCTCTCCCACCCAGCCACATGAGTATACATCGATGAAGAATTTGAATCAATCCAAAAATGGGTTCTGGAGTGTTCTCGCTAGAAAAGCCAAAGCCATTATCGACGACGACGACGAAGATGATAATGTAGCTCAAACGTATGATTCTCCTGGAAGAAAAAGGGTGGAAACGCCCCCTACACTGACTAGGGGTAAGAATTATGATCCAAATCCATCTGTTGAAAGCCGTGGAAAGACAGAAAATCCCACATTGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACTATTGGGAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGACATTATTCAAGAAACTCGACATATATTCAGAGTATCAGTCGCTAACCTCGTGAAGGCATCTCGCGACGTAAGGTTGCTATGGCAATGGCTGCAAAAGCAAAACTTCTTCTTCGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.56

Weight (kDa)

9.42

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 311
AccII CGCG 1 cut(s) 705
AciI CCGC 8 cut(s) 83, 101, 104, 110, 129, 258, 261, 273
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 2 cut(s) 70, 325
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 2 cut(s) 345, 694
AgsI TTSAA 4 cut(s) 75, 331, 506, 650
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 2 cut(s) 146, 416
AluI AGCT 2 cut(s) 146, 416
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 192
ApeKI GCWGC 4 cut(s) 19, 188, 263, 730
ApoI RAATTY 2 cut(s) 70, 325
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 2 cut(s) 42, 242
AvaI CYCGRG 1 cut(s) 192
BauI CACGAG 1 cut(s) 689
BbvI GCAGC 4 cut(s) 31, 175, 275, 717
BccI CCATC 1 cut(s) 505
BceAI ACGGC 2 cut(s) 70, 495
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 366, 471
BfmI CTRYAG 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 8 cut(s) 20, 102, 129, 189, 261, 264, 273, 731
BlsI GCNGC 8 cut(s) 21, 103, 130, 190, 262, 265, 274, 732
Bme1390I CCNGG 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 373
Bpu14I TTCGAA 2 cut(s) 42, 242
Bsa29I ATCGAT 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 694
Bse3DI GCAATG 2 cut(s) 533, 731
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 1 cut(s) 435
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 1 cut(s) 563
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 2 cut(s) 345, 694
BseMI GCAATG 2 cut(s) 533, 731
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 5 cut(s) 28, 166, 204, 222, 620
BseXI GCAGC 4 cut(s) 31, 175, 275, 717
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 705
BshVI ATCGAT 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 128, 176
BslI CCNNNNNNNGG 2 cut(s) 345, 694
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 2 cut(s) 128, 176
BsoBI CYCGRG 1 cut(s) 192
Bsp119I TTCGAA 2 cut(s) 42, 242
Bsp143I GATC 1 cut(s) 487
Bsp68I TCGCGA 1 cut(s) 705
BspACI CCGC 8 cut(s) 83, 101, 104, 110, 129, 258, 261, 273
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 317
BspFNI CGCG 1 cut(s) 705
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 2 cut(s) 42, 242
BsrDI GCAATG 2 cut(s) 533, 731
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 1 cut(s) 487
BssNAI GTATAC 1 cut(s) 312
BssSI CACGAG 1 cut(s) 689
Bst1107I GTATAC 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 689
Bst2UI CCWGG 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 39, 288
BstAPI GCANNNNNTGC 2 cut(s) 269, 730
BstBI TTCGAA 2 cut(s) 42, 242
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 234, 601
BstDSI CCRYGG 1 cut(s) 511
BstENI CCTNNNNNAGG 1 cut(s) 692
BstF5I GGATG 1 cut(s) 563
BstFNI CGCG 1 cut(s) 705
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 487
BstNI CCWGG 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 4 cut(s) 31, 175, 275, 717
BstZ17I GTATAC 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 1 cut(s) 563
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 3 cut(s) 464, 586, 633
BtuMI TCGCGA 1 cut(s) 705
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 317
Csp6I GTAC 1 cut(s) 615
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 146, 155, 210, 301, 374, 380, 416, 510, 730
CviKI_1 RGCY 9 cut(s) 146, 155, 210, 301, 374, 380, 416, 510, 730
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 2 cut(s) 234, 601
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 39, 288
EarI CTCTTC 2 cut(s) 39, 288
EciI GGCGGA 2 cut(s) 72, 119
Eco88I CYCGRG 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 308
FalI AAGNNNNNCTT 4 cut(s) 133, 165, 728, 760
FaqI GGGAC 2 cut(s) 128, 176
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 103
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 8 cut(s) 20, 102, 129, 189, 261, 264, 273, 731
FokI GGATG 1 cut(s) 550
Fsp4HI GCNGC 8 cut(s) 20, 102, 129, 189, 261, 264, 273, 731
FspBI CTAG 2 cut(s) 366, 471
GluI GCNGC 8 cut(s) 20, 102, 129, 189, 261, 264, 273, 731
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 373
Hin1II CATG 1 cut(s) 308
HinfI GANTC 6 cut(s) 39, 56, 119, 164, 331, 428
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 671
Hpy188III TCNNGA 7 cut(s) 60, 161, 352, 650, 691, 704, 754
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 9 cut(s) 91, 94, 97, 100, 392, 395, 398, 401, 710
HpyAV CCTTC 3 cut(s) 234, 535, 688
HpyCH4IV ACGT 2 cut(s) 422, 708
HpyCH4V TGCA 4 cut(s) 538, 554, 638, 733
HpyF3I CTNAG 2 cut(s) 234, 601
HpySE526I ACGT 2 cut(s) 422, 708
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 1 cut(s) 487
LpnPI CCDG 6 cut(s) 8, 192, 311, 337, 420, 447
Lsp1109I GCAGC 4 cut(s) 31, 175, 275, 717
LweI GCATC 1 cut(s) 707
MaeI CTAG 2 cut(s) 366, 471
MaeII ACGT 2 cut(s) 422, 708
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 9 cut(s) 56, 65, 141, 275, 334, 413, 450, 739, 742
MluCI AATT 6 cut(s) 70, 75, 325, 481, 571, 757
MlyI GAGTC 1 cut(s) 158
MseI TTAA 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 705
NdeII GATC 1 cut(s) 487
NlaIII CATG 1 cut(s) 308
NruI TCGCGA 1 cut(s) 705
NspV TTCGAA 2 cut(s) 42, 242
PaeR7I CTCGAG 1 cut(s) 192
PaqCI CACCTGC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 3 cut(s) 393, 396, 687
PfeI GAWTC 5 cut(s) 39, 56, 119, 331, 428
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 8 cut(s) 21, 103, 130, 190, 262, 265, 274, 732
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 433
PspXI VCTCGAGB 1 cut(s) 192
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 269
RruI TCGCGA 1 cut(s) 705
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 8 cut(s) 20, 102, 129, 189, 261, 264, 273, 731
Sau3AI GATC 1 cut(s) 487
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 435
SetI ASST 8 cut(s) 27, 148, 232, 418, 425, 690, 711, 716
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 192
SfuI TTCGAA 2 cut(s) 42, 242
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
Sse9I AATT 6 cut(s) 70, 75, 325, 481, 571, 757
SsiI CCGC 8 cut(s) 83, 101, 104, 110, 129, 258, 261, 273
SspMI CTAG 2 cut(s) 366, 471
StyD4I CCNGG 1 cut(s) 433
TaiI ACGT 2 cut(s) 425, 711
TaqI TCGA 8 cut(s) 37, 42, 67, 193, 242, 317, 387, 658
TasI AATT 6 cut(s) 70, 75, 325, 481, 571, 757
TauI GCSGC 4 cut(s) 104, 131, 263, 275
TfiI GAWTC 5 cut(s) 39, 56, 119, 331, 428
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 3 cut(s) 471, 586, 640
TseI GCWGC 4 cut(s) 19, 188, 263, 730
TspDTI ATGAA 2 cut(s) 191, 335
TspRI CASTG 3 cut(s) 471, 586, 640
XagI CCTNNNNNAGG 1 cut(s) 692
XapI RAATTY 2 cut(s) 70, 325
XhoI CTCGAG 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 311
XspI CTAG 2 cut(s) 366, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.