Rh5DG516900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010829
Physical Location & Seq
Reverse (-)
80346361 .. 80350306
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG516900.1

Sequence Viewer

Length: 846 bp
ATGAAGAATTTGAATCAATCCAAAAATGGGTTCTGGAGTGTTCTCGCTAGAAAAGCCAAAGCCATTCTCGACGACGACGACGAAGATGATAATGTAGCTCAAACGTATGATTCTCCTGGAAGGAAAAGGGTGGAAACGCCCCCTACACTGACTAGGGGTAAGAATTATGATCCAAATCCATCTGTTGAAAGCCATGGAAAGACAGAAAATCCCACATTGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACTATTGGGAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGATATTATTCAAGAAACTCGTAAGCATATCAGGAAAAAGCCGCAAAATCAGGCACCAAAATCAGAGTATCAGTCGCTAGCTGACCTCGAACTTCAATTGAAGGCATCTCGCGACGTTGCTATGGCAATGGCTGCAAAAGCAAAACTTCTTCTTCGGGAATTGAAAACTGTAAAAGCAGACCTTGCTTTTGCAAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAGCAAAATTCTTCGGGAGAATCGTGATAGGGGAGAAAGCCCTGAAGACGATGATTTGATACGGCTTCAATTGGAAACACTTTTGGCAGAAAAGGCAAGACTGGCACATGAAAATTCAGTTTATGCACGTGAAAATCGCTTCTTAAGGGAGGTTGTTGAATATCACCAGCTCACGATGCAGGATGTTATATACTTGGATGAGGGAACTGAAGAAGTTACTGAAGTTTATCCCATCAAGGTCATCCCTTCTCAGTCTTCACCACCCTCTGAAGTACGTGGTGTCTCTGCAAGTCCTACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

31.49

Weight (kDa)

5.5

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccII CGCG 1 cut(s) 432
AciI CCGC 1 cut(s) 362
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 3 cut(s) 7, 549, 655
AcuI CTGAAG 4 cut(s) 606, 771, 783, 831
AcvI CACGTG 1 cut(s) 671
AfaI GTAC 2 cut(s) 298, 816
AfiI CCNNNNNNNGG 1 cut(s) 27
AflII CTTAAG 1 cut(s) 685
AgsI TTSAA 8 cut(s) 13, 188, 332, 416, 421, 484, 611, 701
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 4 cut(s) 98, 401, 532, 712
AluI AGCT 4 cut(s) 98, 401, 532, 712
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 829
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 3 cut(s) 7, 549, 655
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AsuHPI GGTGA 2 cut(s) 698, 792
AsuNHI GCTAGC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 373
BbrPI CACGTG 1 cut(s) 671
BbsI GAAGAC 2 cut(s) 594, 789
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 1 cut(s) 439
BccI CCATC 2 cut(s) 187, 782
BceAI ACGGC 1 cut(s) 620
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 829
BfaI CTAG 3 cut(s) 48, 153, 398
BfmI CTRYAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 685
BisI GCNGC 2 cut(s) 362, 453
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 2 cut(s) 363, 454
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 434, 708
BmtI GCTAGC 1 cut(s) 401
BpiI GAAGAC 2 cut(s) 594, 789
BpmI CTGGAG 2 cut(s) 55, 554
Bpu1102I GCTNAGC 1 cut(s) 528
BsaAI YACGTR 2 cut(s) 671, 818
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 648
Bse3DI GCAATG 2 cut(s) 215, 453
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 4 cut(s) 245, 730, 745, 783
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 2 cut(s) 215, 453
BseMII CTCAG 2 cut(s) 542, 806
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 829
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 1 cut(s) 169
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 193
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 541, 805
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 322
BspOI GCTAGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 215, 453
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 490
BstAFI CTTAAG 1 cut(s) 685
BstAPI GCANNNNNTGC 2 cut(s) 452, 503
BstBAI YACGTR 2 cut(s) 671, 818
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 283, 528, 792
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 4 cut(s) 245, 730, 745, 783
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 829
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 7 cut(s) 53, 452, 458, 503, 635, 644, 718
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 2 cut(s) 594, 789
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 4 cut(s) 245, 730, 745, 783
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 146, 268, 315
BtuMI TCGCGA 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 399
Csp6I GTAC 2 cut(s) 297, 815
CviAII CATG 2 cut(s) 194, 650
CviQI GTAC 2 cut(s) 297, 815
DdeI CTNAG 3 cut(s) 283, 528, 792
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 193
Eco57I CTGAAG 4 cut(s) 606, 771, 783, 831
Eco72I CACGTG 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 197, 653
FalI AAGNNNNNCTT 4 cut(s) 450, 482, 486, 518
FatI CATG 2 cut(s) 193, 649
Fnu4HI GCNGC 2 cut(s) 362, 453
FokI GGATG 4 cut(s) 232, 737, 752, 770
Fsp4HI GCNGC 2 cut(s) 362, 453
FspBI CTAG 3 cut(s) 48, 153, 398
GluI GCNGC 2 cut(s) 362, 453
GsuI CTGGAG 2 cut(s) 55, 554
Hin1II CATG 2 cut(s) 197, 653
HinfI GANTC 3 cut(s) 13, 110, 562
HphI GGTGA 2 cut(s) 698, 792
Hpy188I TCNGA 2 cut(s) 385, 811
Hpy188III TCNNGA 9 cut(s) 34, 68, 332, 352, 431, 476, 557, 566, 715
Hpy99I CGWCG 5 cut(s) 74, 77, 80, 83, 437
HpyAV CCTTC 4 cut(s) 114, 217, 415, 798
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 4 cut(s) 104, 435, 670, 817
HpyCH4V TGCA 8 cut(s) 220, 236, 320, 455, 512, 668, 721, 830
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 452, 458, 503, 635, 644, 718
HpyF3I CTNAG 3 cut(s) 283, 528, 792
HpySE526I ACGT 4 cut(s) 104, 435, 670, 817
Hsp92II CATG 2 cut(s) 197, 653
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 2 cut(s) 434, 708
MaeI CTAG 3 cut(s) 48, 153, 398
MaeII ACGT 4 cut(s) 104, 435, 670, 817
MaeIII GTNAC 1 cut(s) 757
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 9 cut(s) 16, 95, 461, 464, 545, 551, 599, 764, 789
MfeI CAATTG 2 cut(s) 416, 611
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 8 cut(s) 7, 163, 253, 416, 479, 549, 611, 655
MnlI CCTC 7 cut(s) 280, 283, 416, 529, 685, 736, 817
MseI TTAA 2 cut(s) 252, 686
MspA1I CMGCKG 1 cut(s) 532
MspCI CTTAAG 1 cut(s) 685
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 2 cut(s) 416, 611
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 7 cut(s) 53, 452, 458, 503, 635, 644, 718
NcoI CCATGG 1 cut(s) 193
NdeII GATC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 2 cut(s) 197, 653
NlaIV GGNNCC 1 cut(s) 375
NruI TCGCGA 1 cut(s) 432
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 78, 562
PfeI GAWTC 3 cut(s) 13, 110, 562
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 2 cut(s) 363, 454
PmaCI CACGTG 1 cut(s) 671
PmlI CACGTG 1 cut(s) 671
Ppu21I YACGTR 2 cut(s) 671, 818
Psp6I CCWGG 1 cut(s) 115
PspCI CACGTG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 532
RruI TCGCGA 1 cut(s) 432
RsaI GTAC 2 cut(s) 298, 816
RsaNI GTAC 2 cut(s) 297, 815
SaqAI TTAA 2 cut(s) 252, 686
SatI GCNGC 2 cut(s) 362, 453
Sau3AI GATC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 2 cut(s) 434, 708
SfcI CTRYAG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 8 cut(s) 7, 163, 253, 416, 479, 549, 611, 655
SsiI CCGC 1 cut(s) 362
SspMI CTAG 3 cut(s) 48, 153, 398
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 4 cut(s) 107, 438, 673, 820
TaqI TCGA 2 cut(s) 69, 408
TasI AATT 8 cut(s) 7, 163, 253, 416, 479, 549, 611, 655
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 3 cut(s) 13, 110, 562
Tru1I TTAA 2 cut(s) 252, 686
Tru9I TTAA 2 cut(s) 252, 686
TscAI CASTG 3 cut(s) 153, 268, 322
TseI GCWGC 1 cut(s) 452
TspDTI ATGAA 2 cut(s) 17, 666
TspRI CASTG 3 cut(s) 153, 268, 322
Vha464I CTTAAG 1 cut(s) 685
XapI RAATTY 3 cut(s) 7, 549, 655
XspI CTAG 3 cut(s) 48, 153, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.