Rorug05G0426800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010829
Physical Location & Seq
Reverse (-)
59274246 .. 59276403
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0426800.1

Sequence Viewer

Length: 1092 bp
ATGTCTCTCCAAGTTTTAGCATCTCAAGCTCAAAGGCCAGATACCGTTGCTCATGTTAAGCGACATTCAACTAATTATGCCCCAAGCATTTGGGGTGATCATTTTCTCTCTTATGCTACCACGGAAGTAAACATTGAACTTGAGCAGCATGTCCGAGAACTGAAAGAAGAGGTGAAAAGCATGCTAATGGATCCCGTTAAAAAGCCTTCACAACAAATGGACTTGGTTGATGACATTCAACGCCTAGGCGTGTCCTATCATTTTGAAAATGAGATTGATGGAATTTTGAAACAAATTCACCATAACTACTCTTCTGGTAGTGATGATGACCTTTACACTACTGCTCTCCATTTTCGATTGTTGAGACAACAAGGTTATAACGTTTCATGCGGTCATATATTAATTGAGTGGGATATCCGTGCCATAGACCAATTACCAGATTATATGAAAGTTTGCTACAAGGCATTGTTAGAAGTCTATACTGAAATTGAAGAAGAACTTGCAAAGGAGGGAAAGTTGTATCGAATCCACTATGCCAGAGAAGCTATGAAAAGGCTAGCTGAAAGTTACTTCCTTGAAGCTAAATGGTTGCACCAGAAACACATACCAACAATGGATGAATATATGGCCCTAGCATTAATGACCACAGGCTACCCTATGCTAATAACAACATCTTTTGTTGGAATGGGAGATATTGCTACACAAGACTCCTTCGATTGGTTGGCCACTTATCCTAGGGCTGTAAAAGGGGCTACAATGGTTTGCCGACTCATGGATGACATAGTGGACCACAAGTTTGAGCAAAAGAAAGGATATGTTACCTCAGCTGTAGAATGCTACATGAAAGAATATGGTGCCACAGAAGAAGAAGCAATAATCGGATTGCGTAGAAAAGTGAGTGACGCATGGAATGATATAAACGAATCGTTCCTCCTTCCTAATGCTGTTCCGAGGCCACTACTAACCCGAATTCTTAACCTTGCATGTGCCATGGATGTTGCATACAAGTACGAAGATGGTTACACTACTCATCATGAGGTTCTGCTCAAGGATTTCATAGTTTCTACACTTGTCCAATCTGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

41.82

Weight (kDa)

5.38

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 131 2.9e-31 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 136 - 305 2.2e-63 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 136 - 305 8.9e-47 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 854
AciI CCGC 1 cut(s) 390
AclI AACGTT 1 cut(s) 381
AclWI GGATC 2 cut(s) 185, 198
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 3 cut(s) 282, 294, 969
AfaI GTAC 1 cut(s) 1010
AfiI CCNNNNNNNGG 2 cut(s) 717, 772
AgsI TTSAA 7 cut(s) 69, 137, 239, 266, 289, 491, 578
AluBI AGCT 5 cut(s) 29, 545, 560, 581, 827
AluI AGCT 5 cut(s) 29, 545, 560, 581, 827
Alw26I GTCTC 2 cut(s) 9, 358
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 4 cut(s) 35, 627, 723, 953
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 3 cut(s) 282, 294, 969
ArsI GACNNNNNNTTYG 2 cut(s) 779, 811
AseI ATTAAT 2 cut(s) 401, 638
AspA2I CCTAGG 2 cut(s) 244, 734
AspS9I GGNCC 2 cut(s) 628, 787
AsuHPI GGTGA 3 cut(s) 107, 184, 290
AsuNHI GCTAGC 1 cut(s) 556
AvaII GGWCC 1 cut(s) 787
AvrII CCTAGG 2 cut(s) 244, 734
BalI TGGCCA 1 cut(s) 725
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 854
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 1 cut(s) 157
BccI CCATC 2 cut(s) 272, 1010
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 9, 358
BfaI CTAG 4 cut(s) 245, 557, 632, 735
BfmI CTRYAG 1 cut(s) 828
BisI GCNGC 1 cut(s) 146
BlnI CCTAGG 2 cut(s) 244, 734
BlsI GCNGC 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 628, 787
BmiI GGNNCC 2 cut(s) 192, 856
BmsI GCATC 1 cut(s) 29
BmtI GCTAGC 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 823
BpuEI CTTGAG 3 cut(s) 9, 161, 1031
BsaJI CCNNGG 5 cut(s) 120, 244, 734, 950, 990
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 772
BseDI CCNNGG 5 cut(s) 120, 244, 734, 950, 990
BseGI GGATG 3 cut(s) 622, 781, 1000
BseLI CCNNNNNNNGG 2 cut(s) 717, 772
BseMII CTCAG 1 cut(s) 837
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 4 cut(s) 37, 629, 725, 955
BshNI GGYRCC 1 cut(s) 854
BslI CCNNNNNNNGG 2 cut(s) 717, 772
BsmAI GTCTC 2 cut(s) 9, 358
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 4 cut(s) 37, 629, 725, 955
Bsp143I GATC 2 cut(s) 97, 190
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 1 cut(s) 390
BspANI GGCC 4 cut(s) 37, 629, 725, 955
BspCNI CTCAG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 2 cut(s) 192, 856
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 2 cut(s) 185, 198
BspT107I GGYRCC 1 cut(s) 854
BssECI CCNNGG 5 cut(s) 120, 244, 734, 950, 990
BssMI GATC 2 cut(s) 97, 190
BssT1I CCWWGG 3 cut(s) 244, 734, 990
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 162, 316
BstC8I GCNNGC 2 cut(s) 182, 558
BstDEI CTNAG 1 cut(s) 823
BstDSI CCRYGG 2 cut(s) 120, 990
BstF5I GGATG 3 cut(s) 622, 781, 1000
BstKTI GATC 2 cut(s) 100, 193
BstMAI GTCTC 2 cut(s) 9, 358
BstMBI GATC 2 cut(s) 97, 190
BstMWI GCNNNNNNNGC 2 cut(s) 26, 542
BstNSI RCATGY 3 cut(s) 152, 184, 987
BstSFI CTRYAG 1 cut(s) 828
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 4 cut(s) 37, 629, 725, 955
BtgI CCRYGG 2 cut(s) 120, 990
BtsCI GGATG 3 cut(s) 622, 781, 1000
Cac8I GCNNGC 2 cut(s) 182, 558
CciI TCATGA 1 cut(s) 1033
Cfr13I GGNCC 2 cut(s) 628, 787
CseI GACGC 1 cut(s) 911
Csp6I GTAC 1 cut(s) 1009
CviQI GTAC 1 cut(s) 1009
DdeI CTNAG 1 cut(s) 823
DpnI GATC 2 cut(s) 99, 192
DpnII GATC 2 cut(s) 97, 190
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 2 cut(s) 162, 316
EarI CTCTTC 2 cut(s) 162, 316
Eco130I CCWWGG 3 cut(s) 244, 734, 990
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 969
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 3 cut(s) 244, 734, 990
ErhI CCWWGG 3 cut(s) 244, 734, 990
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 3 cut(s) 629, 788, 1007
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 4 cut(s) 245, 557, 632, 735
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 4 cut(s) 37, 629, 725, 955
HgaI GACGC 1 cut(s) 911
HinfI GANTC 4 cut(s) 525, 707, 768, 923
HphI GGTGA 3 cut(s) 107, 184, 290
Hpy166II GTNNAC 2 cut(s) 130, 787
Hpy188I TCNGA 3 cut(s) 155, 881, 951
Hpy188III TCNNGA 1 cut(s) 1034
Hpy8I GTNNAC 2 cut(s) 130, 787
HpyAV CCTTC 3 cut(s) 216, 721, 944
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 503, 592, 983, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 542
HpyF3I CTNAG 1 cut(s) 823
HpySE526I ACGT 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 97, 190
LpnPI CCDG 6 cut(s) 51, 300, 450, 550, 608, 633
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 29
MaeI CTAG 4 cut(s) 245, 557, 632, 735
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 4 cut(s) 566, 817, 899, 1019
MalI GATC 2 cut(s) 99, 192
MboI GATC 2 cut(s) 97, 190
MboII GAAGA 7 cut(s) 179, 303, 503, 506, 875, 878, 1025
MflI RGATCY 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 7 cut(s) 73, 282, 294, 402, 431, 486, 969
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 2 cut(s) 701, 762
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 6 cut(s) 163, 502, 832, 941, 945, 1030
Mox20I TGGCCA 1 cut(s) 725
MscI TGGCCA 1 cut(s) 725
MseI TTAA 5 cut(s) 57, 198, 401, 638, 975
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 827
Mva1269I GAATGC 1 cut(s) 839
MwoI GCNNNNNNNGC 2 cut(s) 26, 542
NcoI CCATGG 1 cut(s) 990
NdeII GATC 2 cut(s) 97, 190
NheI GCTAGC 1 cut(s) 556
NlaIV GGNNCC 2 cut(s) 192, 856
NmuCI GTSAC 1 cut(s) 899
NspI RCATGY 3 cut(s) 152, 184, 987
PaeI GCATGC 1 cut(s) 184
PagI TCATGA 1 cut(s) 1033
PctI GAATGC 1 cut(s) 839
PfeI GAWTC 2 cut(s) 525, 923
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 2 cut(s) 701, 762
PpsI GAGTC 2 cut(s) 701, 762
PshBI ATTAAT 2 cut(s) 401, 638
PsiI TTATAA 1 cut(s) 378
Psp1406I AACGTT 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 192, 856
PspPI GGNCC 2 cut(s) 628, 787
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 1 cut(s) 1010
RsaNI GTAC 1 cut(s) 1009
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 5 cut(s) 57, 198, 401, 638, 975
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 97, 190
Sau96I GGNCC 2 cut(s) 628, 787
SchI GAGTC 2 cut(s) 701, 762
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 3 cut(s) 24, 140, 1046
SmoI CTYRAG 3 cut(s) 24, 140, 1046
SphI GCATGC 1 cut(s) 184
Sse9I AATT 7 cut(s) 73, 282, 294, 402, 431, 486, 969
SsiI CCGC 1 cut(s) 390
SspMI CTAG 4 cut(s) 245, 557, 632, 735
StyI CCWWGG 3 cut(s) 244, 734, 990
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 355, 523, 714
TasI AATT 7 cut(s) 73, 282, 294, 402, 431, 486, 969
TfiI GAWTC 2 cut(s) 525, 923
Tru1I TTAA 5 cut(s) 57, 198, 401, 638, 975
Tru9I TTAA 5 cut(s) 57, 198, 401, 638, 975
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 6 cut(s) 375, 461, 563, 633, 857, 1045
TspGWI ACGGA 2 cut(s) 137, 407
VpaK11BI GGWCC 1 cut(s) 787
VspI ATTAAT 2 cut(s) 401, 638
XapI RAATTY 3 cut(s) 282, 294, 969
XceI RCATGY 3 cut(s) 152, 184, 987
XmaJI CCTAGG 2 cut(s) 244, 734
XspI CTAG 4 cut(s) 245, 557, 632, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.