Rh5BG504700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010829
Physical Location & Seq
Reverse (-)
80189635 .. 80193683
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG504700.1

Sequence Viewer

Length: 852 bp
ATGAAGAATTTGAATCAATCCAAAAATGGGTTCTGGAGTGTTCTCGCTAGAAAAGCCAAAGCCATTATCGACGACAACGACGACGACGAAGATGATAATGTAGCTCAAACGTATGATTCTCCTGGAAGAAAAAGGGTGGAAACGCCCCCTACACTGACTAGGGGTAAGAATTATGATCCAAATCCATCTGTTGAAAGCCGTGGAAAGACAGAAAATCCCACATTGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACTATTGGGAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGACATTATTCAAGAAACTCGTAAGCATATCAGGAAAAAGCCGCAAAATCAGGCACCAAAATCAGAGTATCAGTCGCTAGCTGACCTCGAACTTCAATTGAAGGCATCTCGCGACGTTGCTATGGCAATGGCTGCAAAAGCAAAACTTCTTCTTCGAGAATTGAAGACTGTAAAAGCAGACCTTGCTTTTGCAAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAGCAAAATTCTTCGGGAGAATCGTGATAGGGGAGAAAGCCCTGAAGACGATGATTTGATACGGCTTCAATTGGAAACACTTTTGGCAGAAAAGGCAAGACTGGCACATGAAAATTCAGTTTATGCACGTGAAAATCGCTTCTTAAGGGAGGTTGTTGAATATCACCAGCTCACGATGCAGGATGTTATATACTTGGATGAGGGAACTGAAGAAGTTACTGAAGTTTATCCCATCAAGGTCATCCCTTCTCAGTCTTCACCACCCTCTGAAGTACGTGGTGTCTCTGCAAGTCCTACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

31.74

Weight (kDa)

5.41

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 1 cut(s) 438
AciI CCGC 1 cut(s) 368
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 3 cut(s) 7, 555, 661
AcuI CTGAAG 4 cut(s) 612, 777, 789, 837
AcvI CACGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 304, 822
AfiI CCNNNNNNNGG 1 cut(s) 27
AflII CTTAAG 1 cut(s) 691
AgsI TTSAA 8 cut(s) 13, 194, 338, 422, 427, 490, 617, 707
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 4 cut(s) 104, 407, 538, 718
AluI AGCT 4 cut(s) 104, 407, 538, 718
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 3 cut(s) 7, 555, 661
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AsuHPI GGTGA 2 cut(s) 704, 798
AsuNHI GCTAGC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 379
BbrPI CACGTG 1 cut(s) 677
BbsI GAAGAC 3 cut(s) 497, 600, 795
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 193, 788
BceAI ACGGC 2 cut(s) 183, 626
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 3 cut(s) 48, 159, 404
BfmI CTRYAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 691
BisI GCNGC 2 cut(s) 368, 459
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 2 cut(s) 369, 460
Bme1390I CCNGG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 440, 714
BmtI GCTAGC 1 cut(s) 407
BpiI GAAGAC 3 cut(s) 497, 600, 795
BpmI CTGGAG 2 cut(s) 55, 560
Bpu1102I GCTNAGC 1 cut(s) 534
BsaAI YACGTR 2 cut(s) 677, 824
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 654
Bse3DI GCAATG 2 cut(s) 221, 459
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 4 cut(s) 251, 736, 751, 789
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 2 cut(s) 221, 459
BseMII CTCAG 2 cut(s) 548, 812
BseNI ACTGG 1 cut(s) 654
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 438
BshNI GGYRCC 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 835
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 534
Bsp68I TCGCGA 1 cut(s) 438
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 547, 811
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 381
BspMAI CTGCAG 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 379
BspTI CTTAAG 1 cut(s) 691
BsrDI GCAATG 2 cut(s) 221, 459
BsrI ACTGG 1 cut(s) 654
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 691
BstAPI GCANNNNNTGC 2 cut(s) 458, 509
BstBAI YACGTR 2 cut(s) 677, 824
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 3 cut(s) 289, 534, 798
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 4 cut(s) 251, 736, 751, 789
BstFNI CGCG 1 cut(s) 438
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 7 cut(s) 53, 458, 464, 509, 641, 650, 724
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 3 cut(s) 497, 600, 795
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 541
BtsCI GGATG 4 cut(s) 251, 736, 751, 789
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 152, 274, 321
BtuMI TCGCGA 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 405
Csp6I GTAC 2 cut(s) 303, 821
CviAII CATG 1 cut(s) 656
CviQI GTAC 2 cut(s) 303, 821
DdeI CTNAG 3 cut(s) 289, 534, 798
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco57I CTGAAG 4 cut(s) 612, 777, 789, 837
Eco72I CACGTG 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 659
FalI AAGNNNNNCTT 4 cut(s) 456, 488, 492, 524
FatI CATG 1 cut(s) 655
Fnu4HI GCNGC 2 cut(s) 368, 459
FokI GGATG 4 cut(s) 238, 743, 758, 776
Fsp4HI GCNGC 2 cut(s) 368, 459
FspBI CTAG 3 cut(s) 48, 159, 404
GluI GCNGC 2 cut(s) 368, 459
GsuI CTGGAG 2 cut(s) 55, 560
Hin1II CATG 1 cut(s) 659
HinfI GANTC 3 cut(s) 13, 116, 568
HphI GGTGA 2 cut(s) 704, 798
Hpy188I TCNGA 2 cut(s) 391, 817
Hpy188III TCNNGA 8 cut(s) 34, 338, 358, 437, 482, 563, 572, 721
Hpy99I CGWCG 5 cut(s) 74, 83, 86, 89, 443
HpyAV CCTTC 3 cut(s) 223, 421, 804
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 4 cut(s) 110, 441, 676, 823
HpyCH4V TGCA 8 cut(s) 226, 242, 326, 461, 518, 674, 727, 836
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 458, 464, 509, 641, 650, 724
HpyF3I CTNAG 3 cut(s) 289, 534, 798
HpySE526I ACGT 4 cut(s) 110, 441, 676, 823
Hsp92II CATG 1 cut(s) 659
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 2 cut(s) 440, 714
MaeI CTAG 3 cut(s) 48, 159, 404
MaeII ACGT 4 cut(s) 110, 441, 676, 823
MaeIII GTNAC 1 cut(s) 763
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MfeI CAATTG 2 cut(s) 422, 617
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 8 cut(s) 7, 169, 259, 422, 485, 555, 617, 661
MnlI CCTC 7 cut(s) 286, 289, 422, 535, 691, 742, 823
MseI TTAA 2 cut(s) 258, 692
MspA1I CMGCKG 1 cut(s) 538
MspCI CTTAAG 1 cut(s) 691
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 2 cut(s) 422, 617
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 7 cut(s) 53, 458, 464, 509, 641, 650, 724
NdeII GATC 1 cut(s) 175
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 1 cut(s) 659
NlaIV GGNNCC 1 cut(s) 381
NruI TCGCGA 1 cut(s) 438
PcsI WCGNNNNNNNCGW 4 cut(s) 75, 78, 84, 568
PfeI GAWTC 3 cut(s) 13, 116, 568
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 2 cut(s) 369, 460
PmaCI CACGTG 1 cut(s) 677
PmlI CACGTG 1 cut(s) 677
Ppu21I YACGTR 2 cut(s) 677, 824
Psp6I CCWGG 1 cut(s) 121
PspCI CACGTG 1 cut(s) 677
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 538
RruI TCGCGA 1 cut(s) 438
RsaI GTAC 2 cut(s) 304, 822
RsaNI GTAC 2 cut(s) 303, 821
SaqAI TTAA 2 cut(s) 258, 692
SatI GCNGC 2 cut(s) 368, 459
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 2 cut(s) 440, 714
SfcI CTRYAG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 691
SmoI CTYRAG 1 cut(s) 691
Sse9I AATT 8 cut(s) 7, 169, 259, 422, 485, 555, 617, 661
SsiI CCGC 1 cut(s) 368
SspMI CTAG 3 cut(s) 48, 159, 404
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 4 cut(s) 113, 444, 679, 826
TaqI TCGA 3 cut(s) 69, 414, 481
TasI AATT 8 cut(s) 7, 169, 259, 422, 485, 555, 617, 661
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 3 cut(s) 13, 116, 568
Tru1I TTAA 2 cut(s) 258, 692
Tru9I TTAA 2 cut(s) 258, 692
TscAI CASTG 3 cut(s) 159, 274, 328
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 17, 672
TspRI CASTG 3 cut(s) 159, 274, 328
Vha464I CTTAAG 1 cut(s) 691
XapI RAATTY 3 cut(s) 7, 555, 661
XspI CTAG 3 cut(s) 48, 159, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.