Prupe.6G038600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010829
Physical Location & Seq
Forward (+)
2911753 .. 2914902
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G038600.1

Sequence Viewer

Length: 1155 bp
ATGGCTTACAGGAGGAGGCAGCAGGTGCCATCATCTTCGTCATCAACATCAAGCCCAAGCTTTCGATTTGAAGAAGAAGACGAAAAATCTCGGTACCCACTGCCTCCGCCGCAGTCCGATGATTCGCTTGCGGCCAAAGCTATTCGAGCCTCTTCGGCACACCGCGACTCTTCTCTCTCCTCTGCTTATGCCGCTCGCGGTGCTCAGCCTGCTGTCAACGCCTCGTCACCTTCCCGATTTTCCAACCCCCCCACCACCACAACCACTGCGTCGTCTTCTCCCTCACAGCCACATGAGTATACATCAATAAAAAACTTGAATGAATCCAAACATGGGTTTTGGGGTGTACTTGCTAGAAAAGCCAAAGCCATTCTCGACGACGACGAGGATAATGCAGCTGAAAATTATGATTCTCCTGGAAGAACAAGGGTGGACATGCCTTCTACACCAACAAGGGGTAAGCAGTATCGTGATCCAAACCAACATGTTGAGAGCCGTGGAAGGACAGACAATCCGACTTTACAGAAGGGGTTGGGTGCATTCACATCATCCCTTAGTTATATTAGTGGAACCATTGGGACTGCCTTGGAGGAAGGTCGTACGATTGTTGAGAACCGGACTGCAGACATCATTCAAGAAACTCGTAAGCATATCAAGAAAAAGGCCAGTGGTTCTGCACAGGATCAGGCACAAAAACCTCAGACGCAAGCTGACCTCGAACTTCAATTGAAGGCATCTCGCGACGTTGCAATGGCAATGGCTGCCAAGGCAAAACTTCTTCTTCGGGAGTTGAAGACTGTCAAAGCAGATTTTGCTTTTGCAAAGGAGCGATGTGCTCAGTTGGAGGAAGAAAACAAAATCCTTCGAGAGAATCGTGAAAGGGGAGACAGCCCTGAAGATGATGATTTGATACGGCTGCAATTGGAAACACTTTTGGCAGAGAAAGCAAGATTGGCACATGAAAATTCAGTTTACGCACGTGAAAATCGCTTCCTAAGGGAGGTTGTCGAATATCACCAGCTTACCATGCAGGATGTTGTTTACTTGGATGAGGGAACTGAAGAAGTCACTGAAGTTTATCCCATTAAGGTCATCCCTTCTTATTCTTCACCAGCATCAGAAGTCCGGGGAGTTTCCCAAAATTCTTCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

42.61

Weight (kDa)

6.24

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 25, 93
AccBSI CCGCTC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 299
AccII CGCG 3 cut(s) 165, 198, 741
AciI CCGC 6 cut(s) 107, 110, 131, 163, 192, 198
AclWI GGATC 2 cut(s) 467, 690
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 964, 1141
AcuI CTGAAG 3 cut(s) 915, 1080, 1092
AcvI CACGTG 1 cut(s) 980
AfaI GTAC 3 cut(s) 95, 348, 601
AfiI CCNNNNNNNGG 3 cut(s) 333, 455, 1000
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 6 cut(s) 71, 319, 635, 725, 730, 793
AjnI CCWGG 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 5 cut(s) 60, 140, 398, 710, 1021
AluI AGCT 5 cut(s) 60, 140, 398, 710, 1021
Alw21I GWGCWC 2 cut(s) 205, 838
Alw26I GTCTC 1 cut(s) 879
AlwI GGATC 2 cut(s) 467, 690
AoxI GGCC 2 cut(s) 132, 663
ApeKI GCWGC 4 cut(s) 19, 395, 761, 916
ApoI RAATTY 2 cut(s) 964, 1141
Asp718I GGTACC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 1127
AsuHPI GGTGA 3 cut(s) 219, 1007, 1101
AxyI CCTNAGG 1 cut(s) 995
BanI GGYRCC 2 cut(s) 25, 93
BbrPI CACGTG 1 cut(s) 980
BbsI GAAGAC 3 cut(s) 84, 267, 800
Bbv12I GWGCWC 2 cut(s) 205, 838
BbvI GCAGC 4 cut(s) 31, 407, 748, 903
BccI CCATC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 480, 929
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 417
BcnI CCSGG 1 cut(s) 1127
BcoDI GTCTC 1 cut(s) 879
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 621
BfuAI ACCTGC 1 cut(s) 13
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 7 cut(s) 20, 110, 132, 192, 396, 762, 917
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 7 cut(s) 21, 111, 133, 193, 397, 763, 918
Bme1390I CCNGG 2 cut(s) 417, 1127
BmiI GGNNCC 3 cut(s) 27, 95, 571
BmrFI CCNGG 2 cut(s) 417, 1127
BmsI GCATC 2 cut(s) 743, 1124
BpiI GAAGAC 3 cut(s) 84, 267, 800
Bpu1102I GCTNAGC 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 1127
BsaAI YACGTR 1 cut(s) 980
BsaJI CCNNGG 4 cut(s) 496, 585, 765, 1126
BsaWI WCCGGW 1 cut(s) 615
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 455, 1000
Bse1I ACTGG 1 cut(s) 666
Bse21I CCTNAGG 1 cut(s) 995
Bse3DI GCAATG 2 cut(s) 756, 762
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 4 cut(s) 496, 585, 765, 1126
BseGI GGATG 4 cut(s) 548, 1039, 1054, 1092
BseLI CCNNNNNNNGG 3 cut(s) 333, 455, 1000
BseMI GCAATG 2 cut(s) 756, 762
BseMII CTCAG 3 cut(s) 218, 713, 851
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 28, 169
BseXI GCAGC 4 cut(s) 31, 407, 748, 903
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 3 cut(s) 165, 198, 741
BshFI GGCC 2 cut(s) 134, 665
BshNI GGYRCC 2 cut(s) 25, 93
BsiHKAI GWGCWC 2 cut(s) 205, 838
BsiSI CCGG 2 cut(s) 616, 1126
BsiWI CGTACG 1 cut(s) 599
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 3 cut(s) 333, 455, 1000
BsmAI GTCTC 1 cut(s) 879
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 2 cut(s) 134, 665
Bsp1286I GDGCHC 2 cut(s) 205, 838
Bsp143I GATC 2 cut(s) 472, 682
Bsp1720I GCTNAGC 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 741
BspACI CCGC 6 cut(s) 107, 110, 131, 163, 192, 198
BspANI GGCC 2 cut(s) 134, 665
BspCNI CTCAG 3 cut(s) 217, 712, 850
BspFNI CGCG 3 cut(s) 165, 198, 741
BspLI GGNNCC 3 cut(s) 27, 95, 571
BspMAI CTGCAG 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 2 cut(s) 467, 690
BspT107I GGYRCC 2 cut(s) 25, 93
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 756, 762
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 4 cut(s) 496, 585, 765, 1126
BssMI GATC 2 cut(s) 472, 682
BssNAI GTATAC 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 585, 765
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 799
Bst6I CTCTTC 2 cut(s) 157, 175
BstAPI GCANNNNNTGC 3 cut(s) 25, 761, 812
BstBAI YACGTR 1 cut(s) 980
BstC8I GCNNGC 4 cut(s) 129, 196, 210, 708
BstDEI CTNAG 5 cut(s) 204, 554, 699, 837, 995
BstDSI CCRYGG 1 cut(s) 496
BstENI CCTNNNNNAGG 1 cut(s) 998
BstF5I GGATG 4 cut(s) 548, 1039, 1054, 1092
BstFNI CGCG 3 cut(s) 165, 198, 741
BstKTI GATC 2 cut(s) 475, 685
BstMAI GTCTC 1 cut(s) 879
BstMBI GATC 2 cut(s) 472, 682
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 2 cut(s) 439, 488
BstSCI CCNGG 2 cut(s) 415, 1125
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 3 cut(s) 165, 198, 741
BstV1I GCAGC 4 cut(s) 31, 407, 748, 903
BstV2I GAAGAC 3 cut(s) 84, 267, 800
BstZ17I GTATAC 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 995
BsuRI GGCC 2 cut(s) 134, 665
BtgI CCRYGG 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 844
BtsCI GGATG 4 cut(s) 548, 1039, 1054, 1092
BtsI GCAGTG 2 cut(s) 98, 264
BtsIMutI CAGTG 4 cut(s) 98, 264, 673, 1068
BtuMI TCGCGA 1 cut(s) 741
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 4 cut(s) 129, 196, 210, 708
CseI GACGC 2 cut(s) 258, 712
Csp6I GTAC 3 cut(s) 94, 347, 600
CviAII CATG 6 cut(s) 293, 332, 436, 485, 959, 1027
CviQI GTAC 3 cut(s) 94, 347, 600
DdeI CTNAG 5 cut(s) 204, 554, 699, 837, 995
DpnI GATC 2 cut(s) 474, 684
DpnII GATC 2 cut(s) 472, 682
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 157, 175
EarI CTCTTC 2 cut(s) 157, 175
EciI GGCGGA 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 585, 765
Eco57I CTGAAG 3 cut(s) 915, 1080, 1092
Eco72I CACGTG 1 cut(s) 980
Eco81I CCTNAGG 1 cut(s) 995
EcoNI CCTNNNNNAGG 1 cut(s) 998
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 585, 765
ErhI CCWWGG 2 cut(s) 585, 765
FaeI CATG 6 cut(s) 296, 335, 439, 488, 962, 1030
FaqI GGGAC 1 cut(s) 592
FatI CATG 6 cut(s) 292, 331, 435, 484, 958, 1026
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 7 cut(s) 20, 110, 132, 192, 396, 762, 917
FokI GGATG 4 cut(s) 535, 1046, 1061, 1079
Fsp4HI GCNGC 7 cut(s) 20, 110, 132, 192, 396, 762, 917
FspBI CTAG 1 cut(s) 354
GluI GCNGC 7 cut(s) 20, 110, 132, 192, 396, 762, 917
HaeIII GGCC 2 cut(s) 134, 665
HapII CCGG 2 cut(s) 616, 1126
HgaI GACGC 2 cut(s) 258, 712
Hin1II CATG 6 cut(s) 296, 335, 439, 488, 962, 1030
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 5 cut(s) 122, 167, 323, 410, 871
HpaII CCGG 2 cut(s) 616, 1126
HphI GGTGA 3 cut(s) 219, 1007, 1101
Hpy166II GTNNAC 6 cut(s) 217, 300, 347, 433, 973, 1042
Hpy188I TCNGA 4 cut(s) 118, 516, 702, 1120
Hpy188III TCNNGA 9 cut(s) 234, 374, 470, 635, 655, 740, 785, 866, 875
Hpy8I GTNNAC 6 cut(s) 217, 300, 347, 433, 973, 1042
Hpy99I CGWCG 5 cut(s) 274, 380, 383, 386, 746
HpyAV CCTTC 8 cut(s) 240, 450, 495, 520, 587, 724, 872, 1107
HpyCH4III ACNGT 1 cut(s) 799
HpyCH4IV ACGT 2 cut(s) 744, 979
HpyCH4V TGCA 8 cut(s) 395, 539, 623, 677, 749, 821, 919, 1030
HpyF3I CTNAG 5 cut(s) 204, 554, 699, 837, 995
HpySE526I ACGT 2 cut(s) 744, 979
Hsp92II CATG 6 cut(s) 296, 335, 439, 488, 962, 1030
KpnI GGTACC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 472, 682
LmnI GCTCC 1 cut(s) 826
Lsp1109I GCAGC 4 cut(s) 31, 407, 748, 903
LweI GCATC 2 cut(s) 743, 1124
MaeI CTAG 1 cut(s) 354
MaeII ACGT 2 cut(s) 744, 979
MaeIII GTNAC 2 cut(s) 225, 1066
MalI GATC 2 cut(s) 474, 684
MbiI CCGCTC 1 cut(s) 194
MboI GATC 2 cut(s) 472, 682
MfeI CAATTG 2 cut(s) 725, 920
MhlI GDGCHC 2 cut(s) 205, 838
MluCI AATT 5 cut(s) 403, 725, 920, 964, 1141
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 3 cut(s) 267, 539, 822
MseI TTAA 1 cut(s) 1086
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 2 cut(s) 616, 1126
MspR9I CCNGG 2 cut(s) 417, 1127
MunI CAATTG 2 cut(s) 725, 920
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 3 cut(s) 165, 198, 741
NciI CCSGG 1 cut(s) 1127
NdeII GATC 2 cut(s) 472, 682
NlaIII CATG 6 cut(s) 296, 335, 439, 488, 962, 1030
NlaIV GGNNCC 3 cut(s) 27, 95, 571
NmuCI GTSAC 2 cut(s) 225, 1066
NruI TCGCGA 1 cut(s) 741
NspI RCATGY 2 cut(s) 439, 488
PaqCI CACCTGC 1 cut(s) 13
PciI ACATGT 1 cut(s) 484
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 871
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 4 cut(s) 122, 323, 410, 871
Pfl23II CGTACG 1 cut(s) 599
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 7 cut(s) 21, 111, 133, 193, 397, 763, 918
PleI GAGTC 1 cut(s) 161
PmaCI CACGTG 1 cut(s) 980
PmlI CACGTG 1 cut(s) 980
PpsI GAGTC 1 cut(s) 161
Ppu21I YACGTR 1 cut(s) 980
PscI ACATGT 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 415
PspCI CACGTG 1 cut(s) 980
PspGI CCWGG 1 cut(s) 415
PspLI CGTACG 1 cut(s) 599
PspN4I GGNNCC 3 cut(s) 27, 95, 571
PstI CTGCAG 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 398
RruI TCGCGA 1 cut(s) 741
RsaI GTAC 3 cut(s) 95, 348, 601
RsaNI GTAC 3 cut(s) 94, 347, 600
SaqAI TTAA 1 cut(s) 1086
SatI GCNGC 7 cut(s) 20, 110, 132, 192, 396, 762, 917
Sau3AI GATC 2 cut(s) 472, 682
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 417, 1127
SduI GDGCHC 2 cut(s) 205, 838
SfaNI GCATC 2 cut(s) 743, 1124
SfcI CTRYAG 1 cut(s) 621
Sse9I AATT 5 cut(s) 403, 725, 920, 964, 1141
SsiI CCGC 6 cut(s) 107, 110, 131, 163, 192, 198
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 415, 1125
StyI CCWWGG 2 cut(s) 585, 765
TaaI ACNGT 1 cut(s) 799
TaiI ACGT 2 cut(s) 747, 982
TaqI TCGA 6 cut(s) 64, 145, 375, 717, 865, 1008
TasI AATT 5 cut(s) 403, 725, 920, 964, 1141
TatI WGTACW 1 cut(s) 346
TauI GCSGC 3 cut(s) 112, 134, 194
TfiI GAWTC 4 cut(s) 122, 323, 410, 871
Tru1I TTAA 1 cut(s) 1086
Tru9I TTAA 1 cut(s) 1086
TscAI CASTG 4 cut(s) 105, 271, 673, 1075
TseFI GTSAC 2 cut(s) 225, 1066
TseI GCWGC 4 cut(s) 19, 395, 761, 916
Tsp45I GTSAC 2 cut(s) 225, 1066
TspDTI ATGAA 2 cut(s) 336, 975
TspRI CASTG 4 cut(s) 105, 271, 673, 1075
XagI CCTNNNNNAGG 1 cut(s) 998
XapI RAATTY 2 cut(s) 964, 1141
XceI RCATGY 2 cut(s) 439, 488
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.