MD03G1047600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0010829
Physical Location & Seq
Forward (+)
3830677 .. 3834001
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1047600.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGCTTACAGAAGGAGGCAGCAGGTTTTGTCTTCGTCGTCGTCATCGACATCAAGCACGAGCTTGCGATTTGAAGAAGAAGAGGAAGATAAAACTCGGCACCCATTGCCGCCGCCGCAGTCTGACGATTCGCTTGCGGCCAAAGCCATTCGAGCCTCGTCGGCACATCGGGACTCCTCTCTCTCCTCCGCTTACTCTGCTCGCGGTGCTCAGCCGGCTGTCAACTCCTCCTCCCCAACGTCCTCATTGCCTTCCCGATATTCCAACCCCGCCACCACTGCATCTTCTTCTCTATCCTCCAAGCCACATGAGTATACTTCATTGAAGAACGTGAATGAATCCAAACATGGGTTTTGGGGTGTTCTTGCCAGAAAAGCCAAGGCCATTCTCGACGATGACGATAATGGAGCTCAAGATTATGATTCACCCCGAACAACAAGGGCGGGCATGCAGTCTACACCGACAAGGGGTAAGTATCCTGAACCGAACCAATTTGTTGAGAGCAGCGGAAAGACTGAAAATCCCACATTACAGAAGGGATTGGGGGCATTTACATCATCACTTAGTTATATTAGTGGCACCATTGGGAATGCTTTGGAGGAGGGTCGTACAATTGTTGAGAAGGGGACTGCAGACATCATTCAAGAAACTCGTAAGCATATCAGGAAAAAGCCTAGTGGTTCTGCACAAAAATCAGAACCTCAGACGCAAGCTGACCTAGAACTGCAATTGAAGGCATCTCGCGACGTTGCAATGGCAATGGCTGCCAAAGCAAAACTTCTTCTTCGGGAGTTGAAGACTGTCAAAGCAGATTTTGCTTTTGCGAAGGAGCGATGTGCGCAGCTGGAGGAAGAAAGTAAAATCCTTCGGGAGAATCGTGAAAGGGGAGACAGCCCTGAAGATGATGATTTGATAAGACTGCAATTGGAAACCCTTTTGGCAGAAAAGGCAAGATTGGCACACGAAAATTCAGTGTATGCACGTGAAAACCGCTTCCTAAGGGAGATTGTCGAATATCACCAACTAACTATGCAGGATGTTGTATACTTGGATGAGGGAACTGAAGAAGTCACCGAAGTTTATCCCATCAAGGTAATCCCTCCTTATCCTTCACCGCCATCAGAAGTCCGGGGAGCTTCCCATAGTACTTCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

42.45

Weight (kDa)

6.3

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 840
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 2 cut(s) 99, 578
AccI GTMKAC 3 cut(s) 314, 455, 1044
AccII CGCG 2 cut(s) 204, 744
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 2 cut(s) 918, 1083
AcvI CACGTG 1 cut(s) 983
AfaI GTAC 2 cut(s) 610, 1147
AfiI CCNNNNNNNGG 2 cut(s) 348, 467
AgsI TTSAA 5 cut(s) 74, 325, 644, 733, 796
AluBI AGCT 5 cut(s) 63, 410, 713, 844, 1136
AluI AGCT 5 cut(s) 63, 410, 713, 844, 1136
Alw21I GWGCWC 2 cut(s) 211, 412
Alw26I GTCTC 1 cut(s) 882
AoxI GGCC 2 cut(s) 138, 381
ApeKI GCWGC 4 cut(s) 19, 504, 764, 841
ApoI RAATTY 1 cut(s) 967
AspLEI GCGC 1 cut(s) 841
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 4 cut(s) 417, 1010, 1063, 1104
AxyI CCTNAGG 1 cut(s) 998
BanI GGYRCC 2 cut(s) 99, 578
BanII GRGCYC 1 cut(s) 412
BauI CACGAG 1 cut(s) 58
BbrPI CACGTG 1 cut(s) 983
BbsI GAAGAC 2 cut(s) 24, 803
Bbv12I GWGCWC 2 cut(s) 211, 412
BbvI GCAGC 4 cut(s) 31, 516, 751, 853
BccI CCATC 2 cut(s) 1094, 1126
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciVI GTATCC 1 cut(s) 486
BcnI CCSGG 1 cut(s) 1130
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 2 cut(s) 675, 719
BfmI CTRYAG 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 13
BfuI GTATCC 1 cut(s) 486
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 8 cut(s) 20, 110, 113, 116, 138, 505, 765, 842
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 8 cut(s) 21, 111, 114, 117, 139, 506, 766, 843
BmcAI AGTACT 1 cut(s) 1147
Bme1390I CCNGG 1 cut(s) 1130
BmiI GGNNCC 2 cut(s) 101, 580
BmrFI CCNGG 1 cut(s) 1130
BmsI GCATC 2 cut(s) 290, 746
BpiI GAAGAC 2 cut(s) 24, 803
BpmI CTGGAG 1 cut(s) 866
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 1130
BsaAI YACGTR 1 cut(s) 983
BsaJI CCNNGG 2 cut(s) 378, 1129
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 467
Bse118I RCCGGY 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 998
Bse3DI GCAATG 4 cut(s) 104, 245, 759, 765
BseDI CCNNGG 2 cut(s) 378, 1129
BseGI GGATG 2 cut(s) 1042, 1057
BseLI CCNNNNNNNGG 2 cut(s) 348, 467
BseMI GCAATG 4 cut(s) 104, 245, 759, 765
BseMII CTCAG 2 cut(s) 224, 716
BseRI GAGGAG 5 cut(s) 166, 175, 217, 220, 614
BseXI GCAGC 4 cut(s) 31, 516, 751, 853
BsgI GTGCAG 1 cut(s) 669
Bsh1236I CGCG 2 cut(s) 204, 744
BshFI GGCC 2 cut(s) 140, 383
BshNI GGYRCC 2 cut(s) 99, 578
BsiHKAI GWGCWC 2 cut(s) 211, 412
BsiSI CCGG 2 cut(s) 215, 1129
BslFI GGGAC 2 cut(s) 185, 640
BslI CCNNNNNNNGG 2 cut(s) 348, 467
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 2 cut(s) 185, 640
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 2 cut(s) 140, 383
Bsp1286I GDGCHC 2 cut(s) 211, 412
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp68I TCGCGA 1 cut(s) 744
BspANI GGCC 2 cut(s) 140, 383
BspCNI CTCAG 2 cut(s) 223, 715
BspFNI CGCG 2 cut(s) 204, 744
BspLI GGNNCC 2 cut(s) 101, 580
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 13
BspT107I GGYRCC 2 cut(s) 99, 578
BsrDI GCAATG 4 cut(s) 104, 245, 759, 765
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 378, 1129
BssNAI GTATAC 2 cut(s) 315, 1045
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 378
Bst1107I GTATAC 2 cut(s) 315, 1045
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 1 cut(s) 75
BstAPI GCANNNNNTGC 3 cut(s) 106, 764, 815
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 7 cut(s) 65, 135, 202, 216, 445, 449, 711
BstDEI CTNAG 4 cut(s) 210, 563, 702, 998
BstF5I GGATG 2 cut(s) 1042, 1057
BstFNI CGCG 2 cut(s) 204, 744
BstHHI GCGC 1 cut(s) 841
BstMAI GTCTC 1 cut(s) 882
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 1128
BstSFI CTRYAG 1 cut(s) 630
BstUI CGCG 2 cut(s) 204, 744
BstV1I GCAGC 4 cut(s) 31, 516, 751, 853
BstV2I GAAGAC 2 cut(s) 24, 803
BstZ17I GTATAC 2 cut(s) 315, 1045
Bsu36I CCTNAGG 1 cut(s) 998
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 2 cut(s) 140, 383
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 2 cut(s) 1042, 1057
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 978
BtuMI TCGCGA 1 cut(s) 744
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 7 cut(s) 65, 135, 202, 216, 445, 449, 711
CfoI GCGC 1 cut(s) 841
Cfr10I RCCGGY 1 cut(s) 214
CseI GACGC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 609, 1146
CviAII CATG 3 cut(s) 308, 347, 448
CviQI GTAC 2 cut(s) 609, 1146
DdeI CTNAG 4 cut(s) 210, 563, 702, 998
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 410
Eco57I CTGAAG 2 cut(s) 918, 1083
Eco72I CACGTG 1 cut(s) 983
Eco81I CCTNAGG 1 cut(s) 998
EcoICRI GAGCTC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 311, 350, 451
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 2 cut(s) 185, 640
FatI CATG 3 cut(s) 307, 346, 447
FauI CCCGC 2 cut(s) 277, 436
FblI GTMKAC 3 cut(s) 314, 455, 1044
Fnu4HI GCNGC 8 cut(s) 20, 110, 113, 116, 138, 505, 765, 842
FokI GGATG 2 cut(s) 1049, 1064
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 8 cut(s) 20, 110, 113, 116, 138, 505, 765, 842
FspBI CTAG 2 cut(s) 675, 719
FspI TGCGCA 1 cut(s) 840
GlaI GCGC 1 cut(s) 840
GluI GCNGC 8 cut(s) 20, 110, 113, 116, 138, 505, 765, 842
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 140, 383
HapII CCGG 2 cut(s) 215, 1129
HgaI GACGC 1 cut(s) 715
HhaI GCGC 1 cut(s) 841
Hin1II CATG 3 cut(s) 311, 350, 451
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 5 cut(s) 128, 173, 338, 422, 874
HpaII CCGG 2 cut(s) 215, 1129
HphI GGTGA 4 cut(s) 417, 1010, 1063, 1104
Hpy166II GTNNAC 4 cut(s) 223, 315, 456, 1045
Hpy188I TCNGA 4 cut(s) 124, 697, 705, 1123
Hpy8I GTNNAC 4 cut(s) 223, 315, 456, 1045
Hpy99I CGWCG 5 cut(s) 40, 43, 163, 395, 749
HpyAV CCTTC 8 cut(s) 6, 261, 529, 616, 727, 820, 875, 1119
HpyCH4III ACNGT 1 cut(s) 802
HpyCH4IV ACGT 4 cut(s) 239, 330, 747, 982
HpyCH4V TGCA 9 cut(s) 281, 451, 632, 686, 727, 752, 922, 980, 1033
HpyF3I CTNAG 4 cut(s) 210, 563, 702, 998
HpySE526I ACGT 4 cut(s) 239, 330, 747, 982
Hsp92II CATG 3 cut(s) 311, 350, 451
HspAI GCGC 1 cut(s) 839
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 407, 829, 1133
LpnPI CCDG 9 cut(s) 8, 228, 382, 492, 649, 830, 909, 1019, 1142
Lsp1109I GCAGC 4 cut(s) 31, 516, 751, 853
LweI GCATC 2 cut(s) 290, 746
MaeI CTAG 2 cut(s) 675, 719
MaeII ACGT 4 cut(s) 239, 330, 747, 982
MaeIII GTNAC 1 cut(s) 1069
MfeI CAATTG 3 cut(s) 612, 728, 923
MhlI GDGCHC 2 cut(s) 211, 412
MluCI AATT 5 cut(s) 491, 612, 728, 923, 967
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 288
MroNI GCCGGC 1 cut(s) 214
MspA1I CMGCKG 2 cut(s) 507, 844
MspI CCGG 2 cut(s) 215, 1129
MspR9I CCNGG 1 cut(s) 1130
MunI CAATTG 3 cut(s) 612, 728, 923
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 2 cut(s) 204, 744
NaeI GCCGGC 1 cut(s) 216
NciI CCSGG 1 cut(s) 1130
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 3 cut(s) 311, 350, 451
NlaIV GGNNCC 2 cut(s) 101, 580
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 1069
NruI TCGCGA 1 cut(s) 744
NsbI TGCGCA 1 cut(s) 840
NspI RCATGY 1 cut(s) 451
PaeI GCATGC 1 cut(s) 451
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 396, 874
PctI GAATGC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 216
PfeI GAWTC 4 cut(s) 128, 338, 422, 874
PkrI GCNGC 8 cut(s) 21, 111, 114, 117, 139, 506, 766, 843
PleI GAGTC 1 cut(s) 167
PmaCI CACGTG 1 cut(s) 983
PmlI CACGTG 1 cut(s) 983
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 983
Psp124BI GAGCTC 1 cut(s) 412
PspCI CACGTG 1 cut(s) 983
PspN4I GGNNCC 2 cut(s) 101, 580
PstI CTGCAG 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 844
RruI TCGCGA 1 cut(s) 744
RsaI GTAC 2 cut(s) 610, 1147
RsaNI GTAC 2 cut(s) 609, 1146
SacI GAGCTC 1 cut(s) 412
SatI GCNGC 8 cut(s) 20, 110, 113, 116, 138, 505, 765, 842
ScaI AGTACT 1 cut(s) 1147
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 1130
SduI GDGCHC 2 cut(s) 211, 412
SfaNI GCATC 2 cut(s) 290, 746
SfcI CTRYAG 1 cut(s) 630
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
SphI GCATGC 1 cut(s) 451
Sse9I AATT 5 cut(s) 491, 612, 728, 923, 967
SspMI CTAG 2 cut(s) 675, 719
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 1128
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 802
TaiI ACGT 4 cut(s) 242, 333, 750, 985
TaqI TCGA 4 cut(s) 47, 151, 390, 1011
TasI AATT 5 cut(s) 491, 612, 728, 923, 967
TatI WGTACW 1 cut(s) 1145
TauI GCSGC 4 cut(s) 112, 115, 118, 140
TfiI GAWTC 4 cut(s) 128, 338, 422, 874
TscAI CASTG 2 cut(s) 283, 978
TseFI GTSAC 1 cut(s) 1069
TseI GCWGC 4 cut(s) 19, 504, 764, 841
Tsp45I GTSAC 1 cut(s) 1069
TspDTI ATGAA 2 cut(s) 309, 351
TspRI CASTG 2 cut(s) 283, 978
XapI RAATTY 1 cut(s) 967
XceI RCATGY 1 cut(s) 451
XmiI GTMKAC 3 cut(s) 314, 455, 1044
XspI CTAG 2 cut(s) 675, 719
ZrmI AGTACT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.