Rmu_sc0000470.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000470.1
OG0010829
Physical Location & Seq
Reverse (-)
28729 .. 31114
2386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000470.1_g000005.1.cds

Sequence Viewer

Length: 1170 bp
atggcgtataggaggaggcagcaggtgtcggggtttcgattcgaagagggagaagaatcaagaaatcgaaattcaattattccgccgtcgccgtcgtcgtcggcggcggaggcgggggacgattcgcttgccgccaaagcgataagagcttcttcggctcatcgggactcgtctctctcctctgcttatgctgctcgaggcgttcattctggctctcctctctccccttcagctcctcagttttcgaaatcaatccccgccgccgcaacaactgctgctacttctcttccctctcccacccagccacatgagtatacatcgatgaagaatttgaatcaatccaaaaatgggttctggagcgttctcgctagaaaagccaaagccattatcgacgacgacgacgacgaagatgataatgtagctcaagcgtatgattctcctggaagaaaaagggtggaaacgccccctacactgactaggggtaagaattatgatccaaatccatccgttgaaagccgtggaaagacggaaaatcccacattgcagaagggattgggtgcatttacatcatcccttaattatatcagtggcactattgggagtgccttagaggagggtcgtaccattgttgagaaaggcactgcagacattattcaagaaactcgtaagcatatcaggaaaaagccgcaaaatcaggaaccaaaatcagagtatcagtcgctagctgacctcgaacttcaattgaaggcatctcgcgacgttgctatggcaatggctgcaaaagcaaaacttcttcttcgggaattgaagactgtaaaagcagaccttgcttttgcaaaggagcgatgtgctcagctggaggaagaaagcaaaattcttcgggagaatcgtgataggggagaaagccctgaagacgatgatttgatacggcttcaattggaaacacttttggcagaaaaggcaagactggcacatgaaaattcagtttatgcacgtgaaaatcgcttcttaagggaggttgttgaatatcaccagctcacgatgcaggatgttatatacttggatgagggaactgaagaagttactgaagtttatcccatcaaggtcatcccttctcagtcttcaccaccttctgaagtacgtggtgtctctgcaagtcctaccctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.8

Weight (kDa)

5.86

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 756
AciI CCGC 9 cut(s) 83, 104, 107, 113, 132, 258, 261, 264, 686
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 4 cut(s) 70, 328, 873, 979
AcuI CTGAAG 5 cut(s) 213, 930, 1095, 1107, 1155
AcvI CACGTG 1 cut(s) 995
AfaI GTAC 2 cut(s) 622, 1140
AfiI CCNNNNNNNGG 1 cut(s) 348
AflII CTTAAG 1 cut(s) 1009
AgsI TTSAA 9 cut(s) 75, 334, 512, 656, 740, 745, 808, 935, 1025
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 6 cut(s) 149, 233, 422, 725, 856, 1036
AluI AGCT 6 cut(s) 149, 233, 422, 725, 856, 1036
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 2 cut(s) 177, 1153
AlwI GGATC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 195
ApeKI GCWGC 4 cut(s) 19, 191, 275, 776
ApoI RAATTY 4 cut(s) 70, 328, 873, 979
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
AsuHPI GGTGA 2 cut(s) 1022, 1116
AsuII TTCGAA 2 cut(s) 42, 245
AsuNHI GCTAGC 1 cut(s) 721
AvaI CYCGRG 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 995
BbsI GAAGAC 3 cut(s) 815, 918, 1113
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 4 cut(s) 31, 178, 262, 763
BccI CCATC 2 cut(s) 511, 1106
BceAI ACGGC 4 cut(s) 70, 76, 501, 944
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 177, 1153
BfaI CTAG 3 cut(s) 369, 477, 722
BfmI CTRYAG 1 cut(s) 642
BfrI CTTAAG 1 cut(s) 1009
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 9 cut(s) 20, 105, 132, 192, 261, 264, 276, 686, 777
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 9 cut(s) 21, 106, 133, 193, 262, 265, 277, 687, 778
Bme1390I CCNGG 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 758, 1032
BmtI GCTAGC 1 cut(s) 725
BpiI GAAGAC 3 cut(s) 815, 918, 1113
BpmI CTGGAG 2 cut(s) 376, 878
Bpu1102I GCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 2 cut(s) 42, 245
BpuEI CTTGAG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 320
BsaAI YACGTR 2 cut(s) 995, 1142
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 517
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 972
Bse3DI GCAATG 2 cut(s) 539, 777
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 441
BseCI ATCGAT 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 5 cut(s) 503, 569, 1054, 1069, 1107
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 2 cut(s) 539, 777
BseMII CTCAG 3 cut(s) 251, 866, 1130
BseNI ACTGG 1 cut(s) 972
BseRI GAGGAG 5 cut(s) 28, 169, 207, 225, 626
BseXI GCAGC 4 cut(s) 31, 178, 262, 763
BseYI CCCAGC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 756
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 195
BslFI GGGAC 2 cut(s) 131, 179
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 177, 1153
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 131, 179
BsoBI CYCGRG 1 cut(s) 195
Bsp119I TTCGAA 2 cut(s) 42, 245
Bsp1286I GDGCHC 1 cut(s) 853
Bsp143I GATC 1 cut(s) 493
Bsp1720I GCTNAGC 1 cut(s) 852
Bsp68I TCGCGA 1 cut(s) 756
BspACI CCGC 9 cut(s) 83, 104, 107, 113, 132, 258, 261, 264, 686
BspCNI CTCAG 3 cut(s) 250, 865, 1129
BspDI ATCGAT 1 cut(s) 320
BspFNI CGCG 1 cut(s) 756
BspLI GGNNCC 1 cut(s) 699
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 13
BspOI GCTAGC 1 cut(s) 725
BspPI GGATC 1 cut(s) 488
BspT104I TTCGAA 2 cut(s) 42, 245
BspTI CTTAAG 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 539, 777
BsrI ACTGG 1 cut(s) 972
BssECI CCNNGG 1 cut(s) 517
BssMI GATC 1 cut(s) 493
BssNAI GTATAC 1 cut(s) 315
Bst1107I GTATAC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 2 cut(s) 39, 291
BstAFI CTTAAG 1 cut(s) 1009
BstAPI GCANNNNNTGC 3 cut(s) 272, 776, 827
BstBAI YACGTR 2 cut(s) 995, 1142
BstBI TTCGAA 2 cut(s) 42, 245
BstC8I GCNNGC 2 cut(s) 129, 723
BstDEI CTNAG 4 cut(s) 237, 607, 852, 1116
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 5 cut(s) 503, 569, 1054, 1069, 1107
BstFNI CGCG 1 cut(s) 756
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 2 cut(s) 177, 1153
BstMBI GATC 1 cut(s) 493
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 642
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 4 cut(s) 31, 178, 262, 763
BstV2I GAAGAC 3 cut(s) 815, 918, 1113
BstZ17I GTATAC 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 517
BtgZI GCGATG 1 cut(s) 859
BtsCI GGATG 5 cut(s) 503, 569, 1054, 1069, 1107
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 3 cut(s) 470, 592, 639
BtuMI TCGCGA 1 cut(s) 756
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 129, 723
ClaI ATCGAT 1 cut(s) 320
Csp6I GTAC 2 cut(s) 621, 1139
CviAII CATG 2 cut(s) 308, 974
CviQI GTAC 2 cut(s) 621, 1139
DdeI CTNAG 4 cut(s) 237, 607, 852, 1116
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 39, 291
EarI CTCTTC 2 cut(s) 39, 291
EciI GGCGGA 2 cut(s) 72, 122
Eco57I CTGAAG 5 cut(s) 213, 930, 1095, 1107, 1155
Eco72I CACGTG 1 cut(s) 995
Eco88I CYCGRG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 2 cut(s) 311, 977
FalI AAGNNNNNCTT 6 cut(s) 136, 168, 774, 806, 810, 842
FaqI GGGAC 2 cut(s) 131, 179
FatI CATG 2 cut(s) 307, 973
FauI CCCGC 2 cut(s) 106, 265
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 9 cut(s) 20, 105, 132, 192, 261, 264, 276, 686, 777
FokI GGATG 5 cut(s) 490, 556, 1061, 1076, 1094
Fsp4HI GCNGC 9 cut(s) 20, 105, 132, 192, 261, 264, 276, 686, 777
FspBI CTAG 3 cut(s) 369, 477, 722
GluI GCNGC 9 cut(s) 20, 105, 132, 192, 261, 264, 276, 686, 777
GsaI CCCAGC 1 cut(s) 304
GsuI CTGGAG 2 cut(s) 376, 878
Hin1II CATG 2 cut(s) 311, 977
HinfI GANTC 7 cut(s) 39, 56, 122, 167, 334, 434, 886
HphI GGTGA 2 cut(s) 1022, 1116
Hpy166II GTNNAC 1 cut(s) 315
Hpy188I TCNGA 2 cut(s) 709, 1135
Hpy8I GTNNAC 1 cut(s) 315
HpyAV CCTTC 5 cut(s) 237, 541, 739, 1122, 1140
HpyCH4III ACNGT 1 cut(s) 814
HpyCH4IV ACGT 3 cut(s) 759, 994, 1141
HpyCH4V TGCA 8 cut(s) 544, 560, 644, 779, 836, 992, 1045, 1154
HpyF3I CTNAG 4 cut(s) 237, 607, 852, 1116
HpySE526I ACGT 3 cut(s) 759, 994, 1141
Hsp92II CATG 2 cut(s) 311, 977
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 3 cut(s) 238, 357, 841
Lsp1109I GCAGC 4 cut(s) 31, 178, 262, 763
LweI GCATC 2 cut(s) 758, 1032
MaeI CTAG 3 cut(s) 369, 477, 722
MaeII ACGT 3 cut(s) 759, 994, 1141
MaeIII GTNAC 1 cut(s) 1081
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MfeI CAATTG 2 cut(s) 740, 935
MhlI GDGCHC 1 cut(s) 853
MlyI GAGTC 1 cut(s) 161
MseI TTAA 2 cut(s) 576, 1010
MspA1I CMGCKG 1 cut(s) 856
MspCI CTTAAG 1 cut(s) 1009
MspR9I CCNGG 1 cut(s) 441
MunI CAATTG 2 cut(s) 740, 935
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 1 cut(s) 756
NdeII GATC 1 cut(s) 493
NheI GCTAGC 1 cut(s) 721
NlaIII CATG 2 cut(s) 311, 977
NlaIV GGNNCC 1 cut(s) 699
NruI TCGCGA 1 cut(s) 756
NspV TTCGAA 2 cut(s) 42, 245
PaeR7I CTCGAG 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 5 cut(s) 95, 396, 399, 402, 886
PfeI GAWTC 6 cut(s) 39, 56, 122, 334, 434, 886
PfoI TCCNGGA 1 cut(s) 439
PkrI GCNGC 9 cut(s) 21, 106, 133, 193, 262, 265, 277, 687, 778
PleI GAGTC 1 cut(s) 161
PmaCI CACGTG 1 cut(s) 995
PmlI CACGTG 1 cut(s) 995
PpsI GAGTC 1 cut(s) 161
Ppu21I YACGTR 2 cut(s) 995, 1142
Psp6I CCWGG 1 cut(s) 439
PspCI CACGTG 1 cut(s) 995
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 699
PspXI VCTCGAGB 1 cut(s) 195
PstI CTGCAG 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 856
RruI TCGCGA 1 cut(s) 756
RsaI GTAC 2 cut(s) 622, 1140
RsaNI GTAC 2 cut(s) 621, 1139
SaqAI TTAA 2 cut(s) 576, 1010
SatI GCNGC 9 cut(s) 20, 105, 132, 192, 261, 264, 276, 686, 777
Sau3AI GATC 1 cut(s) 493
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 2 cut(s) 758, 1032
SfcI CTRYAG 1 cut(s) 642
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 2 cut(s) 42, 245
SlaI CTCGAG 1 cut(s) 195
SmlI CTYRAG 3 cut(s) 195, 423, 1009
SmoI CTYRAG 3 cut(s) 195, 423, 1009
SsiI CCGC 9 cut(s) 83, 104, 107, 113, 132, 258, 261, 264, 686
SspMI CTAG 3 cut(s) 369, 477, 722
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 814
TaiI ACGT 3 cut(s) 762, 997, 1144
TaqI TCGA 8 cut(s) 37, 42, 67, 196, 245, 320, 390, 732
TauI GCSGC 5 cut(s) 107, 134, 263, 266, 688
TfiI GAWTC 6 cut(s) 39, 56, 122, 334, 434, 886
Tru1I TTAA 2 cut(s) 576, 1010
Tru9I TTAA 2 cut(s) 576, 1010
TscAI CASTG 3 cut(s) 477, 592, 646
TseI GCWGC 4 cut(s) 19, 191, 275, 776
TspDTI ATGAA 3 cut(s) 194, 338, 990
TspGWI ACGGA 2 cut(s) 496, 542
TspRI CASTG 3 cut(s) 477, 592, 646
Vha464I CTTAAG 1 cut(s) 1009
XapI RAATTY 4 cut(s) 70, 328, 873, 979
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 3 cut(s) 369, 477, 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.