MD11G1050100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010829
Physical Location & Seq
Forward (+)
4292262 .. 4295496
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1050100.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGGCTTACAGAAGAAGGCAGCAGGTTTCGTCGTCGTCATCGACATCAAGCACGAGCTTTCGATTTGAAGAAGAGGAAGATAAATCTCGGTACCCACTACCTTCGCTGCAGTCCGACGATTCGCTTGCGGCCAAAGCTATTCGAGCCTCGTCGGCGCATCGCGACTCCTCTCTCTCCTCCGCTTACGCTGCTCGCGGTGCACAGGCTGCTGTCAACTCCTCCTCCCCAACGTCCTCATTGCCCTCCCGATATTCCAACCCCGCCACCACTGCATCTTCTTCTCCGTCCTCCAAGCCGCATGAGTATACTTCAATCAAGAATGTGAATGAATCCAAACATGGGTTTTGGGGTGTTCTTGCTAGAAAAGCCAAAGCCATTCTCGACGACGATAATGGAGCTCAAGATTATGATTCACCCCGAACAACAAGGGCGGACATGCCGCCGTCTACACCTACAAGGGGTAAGTATCCTGAACCAAACCAATTTGTTGAGAGCCGCGGAAAGACAGAGAATCCCCCATTACAGAAGGGGTTGGGCGCATTTACATCCTCACTTAATTATATTAGTGGCACCATTGGGAATGCTTTGGAGGAGGGTCGTACAATTGTTGAGAAAGGGACTGCAGACATCATTCAAGAGACTCGTAAGCATATCAGGAAAAAGCCTAGTGATTCTGCGCAAAAATCACAACCTCAGACACAAGCTGACCTCGAACTCCAATTGAAGGCATCTCGCGACGTTGCAATGGCAATGGCTGCCAAAGCAAAACTTCTTCTTCGGGAGTTGAAGACTGTCAAAGCAGATTTTGCTTTTGCGAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAACAAAATCCTTCGGGAGAATCGTGAAAGGGGAGACAACCCTGAAGATGATGATATGATAAGACTGCAATTGGAAACCCTTTTGGCAGAAAAGGCTAGATTGGCACACGAAAATTCAGTATATGCACGTGAAAACCGCTTCCTAAGGGAGGTTGTCGAATATCACCAACTCACTATGCAGGATGTTGTATACTTGGATGAGGGAAATGAAGAAGTCACCGAAGTTTATCCCATCAAGGTCATCCCTCCTTATCCTTCACCGCCATCAGAGGTCCAGGGAGCTTCCCAAAATACCTCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

42.33

Weight (kDa)

6.38

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 13
Acc65I GGTACC 1 cut(s) 90
AccB1I GGYRCC 2 cut(s) 90, 569
AccI GTMKAC 3 cut(s) 305, 446, 1035
AccII CGCG 4 cut(s) 162, 195, 498, 735
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 1 cut(s) 909
AcvI CACGTG 1 cut(s) 974
AfaI GTAC 2 cut(s) 92, 601
AfiI CCNNNNNNNGG 4 cut(s) 339, 458, 724, 994
AgsI TTSAA 5 cut(s) 68, 312, 635, 724, 787
AjnI CCWGG 1 cut(s) 1119
AluBI AGCT 6 cut(s) 57, 137, 398, 704, 835, 1127
AluI AGCT 6 cut(s) 57, 137, 398, 704, 835, 1127
Alw21I GWGCWC 3 cut(s) 202, 400, 832
Alw26I GTCTC 2 cut(s) 632, 873
Alw44I GTGCAC 1 cut(s) 198
AoxI GGCC 1 cut(s) 129
ApaLI GTGCAC 1 cut(s) 198
ApeKI GCWGC 5 cut(s) 19, 106, 188, 206, 755
ApoI RAATTY 1 cut(s) 958
Asp718I GGTACC 1 cut(s) 90
AspLEI GCGC 3 cut(s) 157, 539, 679
AspS9I GGNCC 1 cut(s) 1117
AsuHPI GGTGA 4 cut(s) 405, 1001, 1054, 1095
AvaII GGWCC 1 cut(s) 1117
AxyI CCTNAGG 1 cut(s) 989
BaeGI GKGCMC 1 cut(s) 202
BanI GGYRCC 2 cut(s) 90, 569
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 974
BbsI GAAGAC 1 cut(s) 794
Bbv12I GWGCWC 3 cut(s) 202, 400, 832
BbvI GCAGC 5 cut(s) 31, 93, 175, 193, 742
BccI CCATC 2 cut(s) 1085, 1117
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 1121
BciVI GTATCC 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 632, 873
BfaI CTAG 3 cut(s) 360, 666, 942
BfmI CTRYAG 2 cut(s) 107, 621
BfuAI ACCTGC 1 cut(s) 13
BfuI GTATCC 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 9 cut(s) 20, 107, 129, 189, 207, 296, 440, 496, 756
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 9 cut(s) 21, 108, 130, 190, 208, 297, 441, 497, 757
Bme1390I CCNGG 1 cut(s) 1121
Bme18I GGWCC 1 cut(s) 1117
BmgT120I GGNCC 1 cut(s) 1117
BmiI GGNNCC 2 cut(s) 92, 571
BmrFI CCNGG 1 cut(s) 1121
BmsI GCATC 3 cut(s) 166, 281, 737
BpiI GAAGAC 1 cut(s) 794
BpmI CTGGAG 1 cut(s) 857
Bpu1102I GCTNAGC 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 974
BsaJI CCNNGG 2 cut(s) 496, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 458, 724, 994
Bse21I CCTNAGG 1 cut(s) 989
Bse3DI GCAATG 3 cut(s) 236, 750, 756
BseBI CCWGG 1 cut(s) 1121
BseDI CCNNGG 2 cut(s) 496, 1120
BseGI GGATG 4 cut(s) 545, 1033, 1048, 1086
BseLI CCNNNNNNNGG 4 cut(s) 339, 458, 724, 994
BseMI GCAATG 3 cut(s) 236, 750, 756
BseMII CTCAG 2 cut(s) 707, 845
BseRI GAGGAG 5 cut(s) 157, 166, 208, 211, 605
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 5 cut(s) 31, 93, 175, 193, 742
Bsh1236I CGCG 4 cut(s) 162, 195, 498, 735
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 2 cut(s) 90, 569
BsiHKAI GWGCWC 3 cut(s) 202, 400, 832
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 4 cut(s) 339, 458, 724, 994
BsmAI GTCTC 2 cut(s) 632, 873
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 3 cut(s) 202, 400, 832
Bsp1720I GCTNAGC 1 cut(s) 831
Bsp68I TCGCGA 2 cut(s) 162, 735
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 706, 844
BspFNI CGCG 4 cut(s) 162, 195, 498, 735
BspLI GGNNCC 2 cut(s) 92, 571
BspMAI CTGCAG 2 cut(s) 111, 625
BspMI ACCTGC 1 cut(s) 13
BspT107I GGYRCC 2 cut(s) 90, 569
BsrDI GCAATG 3 cut(s) 236, 750, 756
BssECI CCNNGG 2 cut(s) 496, 1120
BssNAI GTATAC 2 cut(s) 306, 1036
BssSI CACGAG 1 cut(s) 52
Bst1107I GTATAC 2 cut(s) 306, 1036
Bst2BI CACGAG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 1121
Bst4CI ACNGT 1 cut(s) 793
Bst6I CTCTTC 1 cut(s) 66
BstAPI GCANNNNNTGC 3 cut(s) 206, 755, 806
BstBAI YACGTR 1 cut(s) 974
BstC8I GCNNGC 2 cut(s) 126, 193
BstDEI CTNAG 3 cut(s) 693, 831, 989
BstDSI CCRYGG 1 cut(s) 496
BstENI CCTNNNNNAGG 1 cut(s) 992
BstF5I GGATG 4 cut(s) 545, 1033, 1048, 1086
BstFNI CGCG 4 cut(s) 162, 195, 498, 735
BstHHI GCGC 3 cut(s) 157, 539, 679
BstMAI GTCTC 2 cut(s) 632, 873
BstNI CCWGG 1 cut(s) 1121
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 1119
BstSFI CTRYAG 2 cut(s) 107, 621
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 4 cut(s) 162, 195, 498, 735
BstV1I GCAGC 5 cut(s) 31, 93, 175, 193, 742
BstV2I GAAGAC 1 cut(s) 794
BstZ17I GTATAC 2 cut(s) 306, 1036
Bsu36I CCTNAGG 1 cut(s) 989
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 496
BtgZI GCGATG 2 cut(s) 143, 838
BtsCI GGATG 4 cut(s) 545, 1033, 1048, 1086
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
BtuMI TCGCGA 2 cut(s) 162, 735
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 126, 193
CfoI GCGC 3 cut(s) 157, 539, 679
Cfr13I GGNCC 1 cut(s) 1117
Cfr42I CCGCGG 1 cut(s) 499
Csp6I GTAC 2 cut(s) 91, 600
CviAII CATG 3 cut(s) 299, 338, 436
CviQI GTAC 2 cut(s) 91, 600
DdeI CTNAG 3 cut(s) 693, 831, 989
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 1117
Eco53kI GAGCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 909
Eco72I CACGTG 1 cut(s) 974
Eco81I CCTNAGG 1 cut(s) 989
EcoICRI GAGCTC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 992
EcoRII CCWGG 1 cut(s) 1119
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 3 cut(s) 302, 341, 439
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FaqI GGGAC 1 cut(s) 631
FatI CATG 3 cut(s) 298, 337, 435
FauI CCCGC 1 cut(s) 268
FblI GTMKAC 3 cut(s) 305, 446, 1035
Fnu4HI GCNGC 9 cut(s) 20, 107, 129, 189, 207, 296, 440, 496, 756
FokI GGATG 4 cut(s) 532, 1040, 1055, 1073
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 9 cut(s) 20, 107, 129, 189, 207, 296, 440, 496, 756
FspBI CTAG 3 cut(s) 360, 666, 942
FspI TGCGCA 1 cut(s) 678
GlaI GCGC 3 cut(s) 156, 538, 678
GluI GCNGC 9 cut(s) 20, 107, 129, 189, 207, 296, 440, 496, 756
GsuI CTGGAG 1 cut(s) 857
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 3 cut(s) 157, 539, 679
Hin1II CATG 3 cut(s) 302, 341, 439
Hin6I GCGC 3 cut(s) 155, 537, 677
HinP1I GCGC 3 cut(s) 155, 537, 677
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 8 cut(s) 119, 164, 329, 410, 511, 640, 671, 865
HphI GGTGA 4 cut(s) 405, 1001, 1054, 1095
Hpy166II GTNNAC 5 cut(s) 200, 214, 306, 447, 1036
Hpy188I TCNGA 3 cut(s) 115, 696, 1114
Hpy8I GTNNAC 5 cut(s) 200, 214, 306, 447, 1036
Hpy99I CGWCG 7 cut(s) 34, 37, 119, 154, 386, 389, 740
HpyAV CCTTC 7 cut(s) 9, 111, 520, 718, 811, 866, 1110
HpyCH4III ACNGT 1 cut(s) 793
HpyCH4IV ACGT 3 cut(s) 230, 738, 973
HpyCH4V TGCA 8 cut(s) 109, 200, 272, 623, 743, 913, 971, 1024
HpyF3I CTNAG 3 cut(s) 693, 831, 989
HpySE526I ACGT 3 cut(s) 230, 738, 973
Hsp92II CATG 3 cut(s) 302, 341, 439
HspAI GCGC 3 cut(s) 155, 537, 677
KpnI GGTACC 1 cut(s) 94
KspI CCGCGG 1 cut(s) 499
LmnI GCTCC 3 cut(s) 395, 820, 1124
LpnPI CCDG 9 cut(s) 8, 188, 483, 640, 821, 900, 1010, 1106, 1133
Lsp1109I GCAGC 5 cut(s) 31, 93, 175, 193, 742
LweI GCATC 3 cut(s) 166, 281, 737
MaeI CTAG 3 cut(s) 360, 666, 942
MaeII ACGT 3 cut(s) 230, 738, 973
MaeIII GTNAC 1 cut(s) 1060
MfeI CAATTG 3 cut(s) 603, 719, 914
MhlI GDGCHC 3 cut(s) 202, 400, 832
MluCI AATT 6 cut(s) 482, 556, 603, 719, 914, 958
MlyI GAGTC 2 cut(s) 158, 634
MmeI TCCRAC 2 cut(s) 138, 279
MseI TTAA 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 498, 835
MspR9I CCNGG 1 cut(s) 1121
MunI CAATTG 3 cut(s) 603, 719, 914
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 1121
MvnI CGCG 4 cut(s) 162, 195, 498, 735
NlaIII CATG 3 cut(s) 302, 341, 439
NlaIV GGNNCC 2 cut(s) 92, 571
NmuCI GTSAC 1 cut(s) 1060
NruI TCGCGA 2 cut(s) 162, 735
NsbI TGCGCA 1 cut(s) 678
NspI RCATGY 1 cut(s) 439
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 865
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 6 cut(s) 119, 329, 410, 511, 671, 865
PkrI GCNGC 9 cut(s) 21, 108, 130, 190, 208, 297, 441, 497, 757
PleI GAGTC 2 cut(s) 158, 634
PmaCI CACGTG 1 cut(s) 974
PmlI CACGTG 1 cut(s) 974
PpsI GAGTC 2 cut(s) 158, 634
Ppu21I YACGTR 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 1119
PspCI CACGTG 1 cut(s) 974
PspGI CCWGG 1 cut(s) 1119
PspN4I GGNNCC 2 cut(s) 92, 571
PspPI GGNCC 1 cut(s) 1117
PstI CTGCAG 2 cut(s) 111, 625
PvuII CAGCTG 1 cut(s) 835
RruI TCGCGA 2 cut(s) 162, 735
RsaI GTAC 2 cut(s) 92, 601
RsaNI GTAC 2 cut(s) 91, 600
SacI GAGCTC 1 cut(s) 400
SacII CCGCGG 1 cut(s) 499
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 9 cut(s) 20, 107, 129, 189, 207, 296, 440, 496, 756
Sau96I GGNCC 1 cut(s) 1117
SchI GAGTC 2 cut(s) 158, 634
ScrFI CCNGG 1 cut(s) 1121
SduI GDGCHC 3 cut(s) 202, 400, 832
SfaNI GCATC 3 cut(s) 166, 281, 737
SfcI CTRYAG 2 cut(s) 107, 621
Sfr303I CCGCGG 1 cut(s) 499
SgrBI CCGCGG 1 cut(s) 499
SinI GGWCC 1 cut(s) 1117
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 6 cut(s) 482, 556, 603, 719, 914, 958
SspMI CTAG 3 cut(s) 360, 666, 942
SstI GAGCTC 1 cut(s) 400
StyD4I CCNGG 1 cut(s) 1119
TaaI ACNGT 1 cut(s) 793
TaiI ACGT 3 cut(s) 233, 741, 976
TaqI TCGA 6 cut(s) 41, 61, 142, 381, 711, 1002
TasI AATT 6 cut(s) 482, 556, 603, 719, 914, 958
TauI GCSGC 4 cut(s) 131, 298, 442, 498
TfiI GAWTC 6 cut(s) 119, 329, 410, 511, 671, 865
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 5 cut(s) 19, 106, 188, 206, 755
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 2 cut(s) 342, 1068
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 274
VneI GTGCAC 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 1117
XagI CCTNNNNNAGG 1 cut(s) 992
XapI RAATTY 1 cut(s) 958
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 3 cut(s) 305, 446, 1035
XspI CTAG 3 cut(s) 360, 666, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.