FvH4_3g41090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010829
Physical Location & Seq
Reverse (-)
34577819 .. 34581355
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41090.t1

Sequence Viewer

Length: 1173 bp
ATGGCGTATAGGAGGAAGCAGCAGGCGTCGGGGTTTCGATTCGAAGAAGGGGAAGAATCCAGAAATTGGAATTCTGTTTTTCCACCGCCGTCATCGTCGGCGGAGGAGGCGGAGGACGATTCGCTTGCCGCCAAAGCTATAAGAGCGTCTTCGGCTCACCGGGACTCTTCTCTGTCCTCTGCTTATGCTGCTCGCGGCGTTCATTCTGGCTCTCACATGTCCCCTTCAGCTCATCTGTCCCCTTCACCTCCTCAGTTTTCGAAATCAATTCCGACCGTCTCGACTCCTGCTTCACTTCCCTCTCCAACCCAGCCACACGAGTATACGTCGATGAAGAATTTGAATGAATCGAAAAATGGGTTCTGGAGTTCTCTGGCTAGAAAAGCAAAAGCCATTCTTGACGACGATGAAGATGATAATGCAGCTCAAACATATGATTCTCCTGGAAGAGCAAGGGTAGAAACGCCCCCTACACTGACAAGGGGTAAGAATTATGATCCAAATCCATCCGTTGAAAGCCGGGGAAAGACAGAAAATCCGACAATGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACCATTGGCAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGACATCATTCAAGAAACTCGTAAGCATATTAGGAAAAAGCCGCAAAATCAGGCACCAAAATCAGAATATCAGTCACTAGCTGACCTCGAACTTCAACTCAAGGCATCTCGCGACGTTGCTATGGCAATGGCTGCCAAAGCAAAACTTCTCCTTCGGGAGTTGAAAACTGTAAAAGCAGACCTTGCTTTTGCAAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAGCAAAATCCTTCGGGAAAATCGTGACAGGGGAGACAGTCCTGAAGACGATGACTTGATACGGCTTCAATTAGAAACACTTTTGGCAGAAAAGGCAAGACTGGCACATGAGAATTCAGTTTATGCACGTGAAAATCGCTTCTTAAGGGAGGTTGTTGAATATCACCAGCTCACGATGCAGGACGTTATATACTTGGATGAGGGAACGGAAGAAGTTACAGAAGTTTATCCCATCAAGGTCATCCCTTCTCAGTCATCACCACCCTCTGAAGTACAGGGTGTCTCCCCAAGGTATACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

391

Amino Acids

43.19

Weight (kDa)

5.77

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 593, 700
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 2 cut(s) 323, 1163
AccII CGCG 2 cut(s) 195, 759
AciI CCGC 6 cut(s) 86, 101, 110, 129, 195, 689
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 3 cut(s) 70, 337, 982
AcuI CTGAAG 3 cut(s) 210, 933, 1158
AcvI CACGTG 1 cut(s) 998
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 2 cut(s) 625, 1143
AfiI CCNNNNNNNGG 1 cut(s) 66
AflII CTTAAG 1 cut(s) 1012
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 7 cut(s) 343, 515, 659, 743, 811, 938, 1028
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 6 cut(s) 137, 230, 425, 728, 859, 1039
AluI AGCT 6 cut(s) 137, 230, 425, 728, 859, 1039
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 3 cut(s) 283, 897, 1156
AlwI GGATC 1 cut(s) 491
ApeKI GCWGC 4 cut(s) 19, 188, 422, 779
ApoI RAATTY 3 cut(s) 70, 337, 982
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
AsuC2I CCSGG 2 cut(s) 161, 521
AsuHPI GGTGA 4 cut(s) 149, 237, 1025, 1119
AsuII TTCGAA 2 cut(s) 42, 260
BanI GGYRCC 2 cut(s) 593, 700
BauI CACGAG 1 cut(s) 317
BbrPI CACGTG 1 cut(s) 998
BbsI GAAGAC 2 cut(s) 141, 921
Bbv12I GWGCWC 1 cut(s) 856
BbvI GCAGC 4 cut(s) 31, 175, 434, 766
BccI CCATC 2 cut(s) 514, 1109
BceAI ACGGC 2 cut(s) 73, 947
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 2 cut(s) 161, 521
BcoDI GTCTC 3 cut(s) 283, 897, 1156
BfaI CTAG 2 cut(s) 378, 725
BfmI CTRYAG 1 cut(s) 645
BfrI CTTAAG 1 cut(s) 1012
BisI GCNGC 7 cut(s) 20, 129, 189, 196, 423, 689, 780
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 7 cut(s) 21, 130, 190, 197, 424, 690, 781
Bme1390I CCNGG 3 cut(s) 161, 444, 521
BmiI GGNNCC 2 cut(s) 595, 702
BmrFI CCNGG 3 cut(s) 161, 444, 521
BmsI GCATC 2 cut(s) 761, 1035
BpiI GAAGAC 2 cut(s) 141, 921
BpmI CTGGAG 2 cut(s) 385, 881
Bpu1102I GCTNAGC 1 cut(s) 855
Bpu14I TTCGAA 2 cut(s) 42, 260
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 161, 521
BsaAI YACGTR 1 cut(s) 998
BsaBI GATNNNNATC 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 520, 1157
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 975
Bse3DI GCAATG 1 cut(s) 780
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 520, 1157
BseGI GGATG 4 cut(s) 506, 572, 1072, 1110
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 3 cut(s) 266, 869, 1133
BseNI ACTGG 1 cut(s) 975
BseRI GAGGAG 3 cut(s) 119, 240, 629
BseXI GCAGC 4 cut(s) 31, 175, 434, 766
BseYI CCCAGC 1 cut(s) 309
Bsh1236I CGCG 2 cut(s) 195, 759
Bsh1285I CGRYCG 1 cut(s) 276
BshNI GGYRCC 2 cut(s) 593, 700
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 856
BsiSI CCGG 2 cut(s) 160, 520
BslFI GGGAC 3 cut(s) 176, 205, 223
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 3 cut(s) 283, 897, 1156
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 3 cut(s) 176, 205, 223
Bsp119I TTCGAA 2 cut(s) 42, 260
Bsp1286I GDGCHC 1 cut(s) 856
Bsp143I GATC 1 cut(s) 496
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp68I TCGCGA 1 cut(s) 759
BspACI CCGC 6 cut(s) 86, 101, 110, 129, 195, 689
BspCNI CTCAG 3 cut(s) 265, 868, 1132
BspFNI CGCG 2 cut(s) 195, 759
BspLI GGNNCC 2 cut(s) 595, 702
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 1 cut(s) 491
BspQI GCTCTTC 1 cut(s) 442
BspT104I TTCGAA 2 cut(s) 42, 260
BspT107I GGYRCC 2 cut(s) 593, 700
BspTI CTTAAG 1 cut(s) 1012
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 1 cut(s) 975
BssECI CCNNGG 2 cut(s) 520, 1157
BssMI GATC 1 cut(s) 496
BssNAI GTATAC 2 cut(s) 324, 1164
BssNI GRCGYC 1 cut(s) 26
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 1157
Bst1107I GTATAC 2 cut(s) 324, 1164
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 277, 817, 908
Bst6I CTCTTC 2 cut(s) 172, 442
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 1012
BstAPI GCANNNNNTGC 2 cut(s) 779, 830
BstBAI YACGTR 1 cut(s) 998
BstBI TTCGAA 2 cut(s) 42, 260
BstC8I GCNNGC 3 cut(s) 24, 126, 193
BstDEI CTNAG 4 cut(s) 252, 610, 855, 1119
BstF5I GGATG 4 cut(s) 506, 572, 1072, 1110
BstFNI CGCG 2 cut(s) 195, 759
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 3 cut(s) 283, 897, 1156
BstMBI GATC 1 cut(s) 496
BstMCI CGRYCG 1 cut(s) 276
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 159, 442, 519
BstSFI CTRYAG 1 cut(s) 645
BstUI CGCG 2 cut(s) 195, 759
BstV1I GCAGC 4 cut(s) 31, 175, 434, 766
BstV2I GAAGAC 2 cut(s) 141, 921
BstZ17I GTATAC 2 cut(s) 324, 1164
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 4 cut(s) 506, 572, 1072, 1110
BtsI GCAGTG 2 cut(s) 610, 642
BtsIMutI CAGTG 4 cut(s) 473, 595, 610, 642
BtuMI TCGCGA 1 cut(s) 759
Cac8I GCNNGC 3 cut(s) 24, 126, 193
CseI GACGC 2 cut(s) 15, 135
Csp6I GTAC 2 cut(s) 624, 1142
CviAII CATG 2 cut(s) 217, 977
CviQI GTAC 2 cut(s) 624, 1142
DdeI CTNAG 4 cut(s) 252, 610, 855, 1119
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 172, 442
EarI CTCTTC 2 cut(s) 172, 442
EciI GGCGGA 2 cut(s) 116, 125
Eco130I CCWWGG 1 cut(s) 1157
Eco57I CTGAAG 3 cut(s) 210, 933, 1158
Eco72I CACGTG 1 cut(s) 998
EcoRI GAATTC 2 cut(s) 70, 982
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 1157
ErhI CCWWGG 1 cut(s) 1157
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 2 cut(s) 220, 980
FalI AAGNNNNNCTT 8 cut(s) 133, 165, 381, 413, 777, 809, 813, 845
FaqI GGGAC 3 cut(s) 176, 205, 223
FatI CATG 2 cut(s) 216, 976
FauNDI CATATG 1 cut(s) 433
FblI GTMKAC 2 cut(s) 323, 1163
Fnu4HI GCNGC 7 cut(s) 20, 129, 189, 196, 423, 689, 780
FokI GGATG 4 cut(s) 493, 559, 1079, 1097
Fsp4HI GCNGC 7 cut(s) 20, 129, 189, 196, 423, 689, 780
FspBI CTAG 2 cut(s) 378, 725
GluI GCNGC 7 cut(s) 20, 129, 189, 196, 423, 689, 780
GsaI CCCAGC 1 cut(s) 313
GsuI CTGGAG 2 cut(s) 385, 881
HapII CCGG 2 cut(s) 160, 520
HgaI GACGC 2 cut(s) 15, 135
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 2 cut(s) 220, 980
HinfI GANTC 7 cut(s) 39, 56, 119, 164, 283, 347, 437
HpaII CCGG 2 cut(s) 160, 520
HphI GGTGA 4 cut(s) 149, 237, 1025, 1119
Hpy166II GTNNAC 2 cut(s) 324, 1164
Hpy188I TCNGA 4 cut(s) 273, 540, 712, 1138
Hpy8I GTNNAC 2 cut(s) 324, 1164
Hpy99I CGWCG 5 cut(s) 31, 100, 331, 407, 764
HpyAV CCTTC 7 cut(s) 41, 234, 252, 544, 809, 890, 1125
HpyCH4III ACNGT 3 cut(s) 277, 817, 908
HpyCH4IV ACGT 4 cut(s) 326, 762, 997, 1053
HpyCH4V TGCA 7 cut(s) 422, 547, 563, 647, 839, 995, 1048
HpyF3I CTNAG 4 cut(s) 252, 610, 855, 1119
HpySE526I ACGT 4 cut(s) 326, 762, 997, 1053
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 2 cut(s) 220, 980
Kzo9I GATC 1 cut(s) 496
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 844
Lsp1109I GCAGC 4 cut(s) 31, 175, 434, 766
LweI GCATC 2 cut(s) 761, 1035
MaeI CTAG 2 cut(s) 378, 725
MaeII ACGT 4 cut(s) 326, 762, 997, 1053
MaeIII GTNAC 3 cut(s) 720, 893, 1084
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 856
MluCI AATT 8 cut(s) 64, 70, 267, 337, 490, 580, 938, 982
MlyI GAGTC 2 cut(s) 158, 277
MmeI TCCRAC 3 cut(s) 296, 329, 563
MseI TTAA 2 cut(s) 579, 1013
MspA1I CMGCKG 1 cut(s) 859
MspCI CTTAAG 1 cut(s) 1012
MspI CCGG 2 cut(s) 160, 520
MspR9I CCNGG 3 cut(s) 161, 444, 521
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 2 cut(s) 195, 759
NciI CCSGG 2 cut(s) 161, 521
NdeI CATATG 1 cut(s) 433
NdeII GATC 1 cut(s) 496
NlaIII CATG 2 cut(s) 220, 980
NlaIV GGNNCC 2 cut(s) 595, 702
NmuCI GTSAC 2 cut(s) 720, 893
NruI TCGCGA 1 cut(s) 759
NspI RCATGY 1 cut(s) 220
NspV TTCGAA 2 cut(s) 42, 260
PciI ACATGT 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 889
PfeI GAWTC 5 cut(s) 39, 56, 119, 347, 437
PflMI CCANNNNNTGG 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 7 cut(s) 21, 130, 190, 197, 424, 690, 781
PleI GAGTC 2 cut(s) 158, 277
PmaCI CACGTG 1 cut(s) 998
PmlI CACGTG 1 cut(s) 998
PpsI GAGTC 2 cut(s) 158, 277
Ppu21I YACGTR 1 cut(s) 998
PscI ACATGT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 442
PspCI CACGTG 1 cut(s) 998
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 595, 702
PstI CTGCAG 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 859
RruI TCGCGA 1 cut(s) 759
RsaI GTAC 2 cut(s) 625, 1143
RsaNI GTAC 2 cut(s) 624, 1142
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 579, 1013
SatI GCNGC 7 cut(s) 20, 129, 189, 196, 423, 689, 780
Sau3AI GATC 1 cut(s) 496
SchI GAGTC 2 cut(s) 158, 277
ScrFI CCNGG 3 cut(s) 161, 444, 521
SduI GDGCHC 1 cut(s) 856
SfaNI GCATC 2 cut(s) 761, 1035
SfcI CTRYAG 1 cut(s) 645
SfuI TTCGAA 2 cut(s) 42, 260
SmlI CTYRAG 2 cut(s) 746, 1012
SmoI CTYRAG 2 cut(s) 746, 1012
Sse9I AATT 8 cut(s) 64, 70, 267, 337, 490, 580, 938, 982
SsiI CCGC 6 cut(s) 86, 101, 110, 129, 195, 689
SspMI CTAG 2 cut(s) 378, 725
StyD4I CCNGG 3 cut(s) 159, 442, 519
StyI CCWWGG 1 cut(s) 1157
TaaI ACNGT 3 cut(s) 277, 817, 908
TaiI ACGT 4 cut(s) 329, 765, 1000, 1056
TaqI TCGA 7 cut(s) 37, 42, 260, 281, 329, 350, 735
TasI AATT 8 cut(s) 64, 70, 267, 337, 490, 580, 938, 982
TatI WGTACW 1 cut(s) 1141
TauI GCSGC 3 cut(s) 131, 198, 691
TfiI GAWTC 5 cut(s) 39, 56, 119, 347, 437
Tru1I TTAA 2 cut(s) 579, 1013
Tru9I TTAA 2 cut(s) 579, 1013
TscAI CASTG 4 cut(s) 480, 595, 610, 649
TseFI GTSAC 2 cut(s) 720, 893
TseI GCWGC 4 cut(s) 19, 188, 422, 779
Tsp45I GTSAC 2 cut(s) 720, 893
TspDTI ATGAA 4 cut(s) 191, 347, 360, 423
TspGWI ACGGA 2 cut(s) 499, 1091
TspRI CASTG 4 cut(s) 480, 595, 610, 649
Van91I CCANNNNNTGG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 1012
XapI RAATTY 3 cut(s) 70, 337, 982
XceI RCATGY 1 cut(s) 220
XmiI GTMKAC 2 cut(s) 323, 1163
XspI CTAG 2 cut(s) 378, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.