Rroxscaffold_1G00007510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010829
Physical Location & Seq
Forward (+)
9612970 .. 9616006
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00007510.1

Sequence Viewer

Length: 1176 bp
ATGGCGTATAGGAGGAGGCAGCAGGTGTCGGGGTTTCGATTCGAGGAAGGAGAAGAATCAATAAATCGAAATTCAATTATTCCGCCGCCGCCGTCGTCGTCGTCGTCGGCGGCGGCGGCGGAGGCGGGGGACGATTCGCTTGCCGCCAAAGCGATAAGAGCTTCTTCGGCTCATCGGGACTCATCTCTCTCCTCTGCTTATGCTGCTCGAGGCGTTCATTCTGGTTCTCCTCTCTCCCCTTCAGCTCCTCAGTTTTCGAAATCAATCCCCACTGCCACAACAACTGCTGCTACTTCTCTTCCCTCTCCCACCCAGCCACATGAGTATACATCGATGAAGAATTTGAATCAATCCAAAAATGGGTTCTGGAGTGTTCTAGCTAGAAAAGCCAAAGCCATTCTCGACGACGACGAAGATGATAATGTAGCTCAAACGTATGATTCTCCTGGAAGAAAAAGGGTGGAAACGCCCCCTACACTGACTAGGGGTAAGAATTATGATCCAAATCCATCTGTTGAAAGCCGTGGAAAGACAGAAAATCCCACATTGCAGAAGGGATTGGGTGCATTTACATCATCCCTTAATTATATCAGTGGCACTATTGGGAGTGCCTTAGAGGAGGGTCGTACCATTGTTGAGAAAGGCACTGCAGATATCATTCAAGAAACTCGTAAGCATATCAAGAAAAAGCCTCAAAATCAGGCACCAAAATCAGAATATCAGTCTCTAGCTGACCTCGAACTTCAATTGAAGGCATCTCGCGACGTTGCTATGGCAATGGCTGCAAAAGCAAAACTTCTTCTTCGGGAATTGAAAACTGTAAAAGCAGACCTTGCTTTTGCTAAGGAGCGATGTGCTCAGCTGGAGGAAGAAAGCAAAATCCTTCGGGAGAATCGTGATAGGGGAGAAAGCCCTGAAGATGATGATTTGATACGGCTTCAATTGGAAACACTTTTGGCAGAAAAGGCAAGACTGGCACATGAAAATTCAGTTTATGCACGTGAAAATCGCTTCTTAAGGGAGGTTGTTGAATATCACCAGCTCACGATGCAGGATGTTATATACCTGGATGAGGGAACTGAAGAAGTTACTGAAGTTTATCCCATCAAGGTCATCCCTTCTCAGTCTTCACCACCCTCTGAAGTACGTGGTGTCTCTGCAAGTCCTACCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

391

Amino Acids

42.86

Weight (kDa)

6.17

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 703
AccI GTMKAC 1 cut(s) 326
AccII CGCG 1 cut(s) 762
AciI CCGC 9 cut(s) 83, 86, 89, 110, 113, 116, 119, 125, 144
AclWI GGATC 1 cut(s) 494
AcsI RAATTY 3 cut(s) 70, 340, 985
AcuI CTGAAG 5 cut(s) 225, 936, 1101, 1113, 1161
AcvI CACGTG 1 cut(s) 1001
AfaI GTAC 2 cut(s) 628, 1146
AfiI CCNNNNNNNGG 2 cut(s) 360, 1072
AflII CTTAAG 1 cut(s) 1015
AgsI TTSAA 9 cut(s) 75, 346, 518, 662, 746, 751, 814, 941, 1031
AjnI CCWGG 2 cut(s) 445, 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 7 cut(s) 161, 245, 380, 428, 731, 862, 1042
AluI AGCT 7 cut(s) 161, 245, 380, 428, 731, 862, 1042
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 2 cut(s) 729, 1159
AlwI GGATC 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 19, 203, 287, 782
ApoI RAATTY 3 cut(s) 70, 340, 985
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
AsuHPI GGTGA 2 cut(s) 1028, 1122
AsuII TTCGAA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 207
BanI GGYRCC 1 cut(s) 703
BbrPI CACGTG 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 1119
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 4 cut(s) 31, 190, 274, 769
BccI CCATC 2 cut(s) 517, 1112
BceAI ACGGC 3 cut(s) 76, 507, 950
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 2 cut(s) 447, 1067
BcoDI GTCTC 2 cut(s) 729, 1159
BfaI CTAG 4 cut(s) 377, 381, 483, 728
BfmI CTRYAG 1 cut(s) 648
BfrI CTTAAG 1 cut(s) 1015
BfuAI ACCTGC 1 cut(s) 13
BlpI GCTNAGC 1 cut(s) 858
Bme1390I CCNGG 2 cut(s) 447, 1067
BmeT110I CYCGRG 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 2 cut(s) 447, 1067
BmsI GCATC 2 cut(s) 764, 1038
BpiI GAAGAC 1 cut(s) 1119
BpmI CTGGAG 2 cut(s) 388, 884
Bpu10I CCTNAGC 1 cut(s) 843
Bpu1102I GCTNAGC 1 cut(s) 858
Bpu14I TTCGAA 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 332
BsaAI YACGTR 2 cut(s) 1001, 1148
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 1 cut(s) 523
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 1072
Bse1I ACTGG 1 cut(s) 978
Bse3DI GCAATG 2 cut(s) 545, 783
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 2 cut(s) 447, 1067
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 4 cut(s) 575, 1060, 1075, 1113
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 360, 1072
BseMI GCAATG 2 cut(s) 545, 783
BseMII CTCAG 3 cut(s) 263, 872, 1136
BseNI ACTGG 1 cut(s) 978
BseRI GAGGAG 5 cut(s) 28, 181, 219, 237, 632
BseXI GCAGC 4 cut(s) 31, 190, 274, 769
BseYI CCCAGC 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 762
BshNI GGYRCC 1 cut(s) 703
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 859
BsiHKCI CYCGRG 1 cut(s) 207
BslFI GGGAC 2 cut(s) 143, 191
BslI CCNNNNNNNGG 2 cut(s) 360, 1072
BsmAI GTCTC 2 cut(s) 729, 1159
BsmFI GGGAC 2 cut(s) 143, 191
BsoBI CYCGRG 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 859
Bsp143I GATC 1 cut(s) 499
Bsp1720I GCTNAGC 1 cut(s) 858
Bsp68I TCGCGA 1 cut(s) 762
BspACI CCGC 9 cut(s) 83, 86, 89, 110, 113, 116, 119, 125, 144
BspCNI CTCAG 3 cut(s) 262, 871, 1135
BspDI ATCGAT 1 cut(s) 332
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 1 cut(s) 705
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 494
BspT104I TTCGAA 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 703
BspTI CTTAAG 1 cut(s) 1015
BsrDI GCAATG 2 cut(s) 545, 783
BsrI ACTGG 1 cut(s) 978
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 1 cut(s) 499
BssNAI GTATAC 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 447, 1067
Bst4CI ACNGT 1 cut(s) 820
Bst6I CTCTTC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 1015
BstAPI GCANNNNNTGC 2 cut(s) 782, 833
BstBAI YACGTR 2 cut(s) 1001, 1148
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 5 cut(s) 249, 613, 843, 858, 1122
BstDSI CCRYGG 1 cut(s) 523
BstENI CCTNNNNNAGG 1 cut(s) 1070
BstF5I GGATG 4 cut(s) 575, 1060, 1075, 1113
BstFNI CGCG 1 cut(s) 762
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 2 cut(s) 729, 1159
BstMBI GATC 1 cut(s) 499
BstNI CCWGG 2 cut(s) 447, 1067
BstSCI CCNGG 2 cut(s) 445, 1065
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 4 cut(s) 31, 190, 274, 769
BstV2I GAAGAC 1 cut(s) 1119
BstZ17I GTATAC 1 cut(s) 327
Bsu15I ATCGAT 1 cut(s) 332
BsuTUI ATCGAT 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 865
BtsCI GGATG 4 cut(s) 575, 1060, 1075, 1113
BtsI GCAGTG 2 cut(s) 270, 645
BtsIMutI CAGTG 4 cut(s) 270, 476, 598, 645
BtuMI TCGCGA 1 cut(s) 762
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 141
ClaI ATCGAT 1 cut(s) 332
Csp6I GTAC 2 cut(s) 627, 1145
CviAII CATG 2 cut(s) 320, 980
CviQI GTAC 2 cut(s) 627, 1145
DdeI CTNAG 5 cut(s) 249, 613, 843, 858, 1122
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 2 cut(s) 72, 134
Eco32I GATATC 1 cut(s) 655
Eco57I CTGAAG 5 cut(s) 225, 936, 1101, 1113, 1161
Eco72I CACGTG 1 cut(s) 1001
Eco88I CYCGRG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 445, 1065
EcoRV GATATC 1 cut(s) 655
FaeI CATG 2 cut(s) 323, 983
FalI AAGNNNNNCTT 6 cut(s) 148, 180, 780, 812, 816, 848
FaqI GGGAC 2 cut(s) 143, 191
FatI CATG 2 cut(s) 319, 979
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 326
FokI GGATG 4 cut(s) 562, 1067, 1082, 1100
FspBI CTAG 4 cut(s) 377, 381, 483, 728
GsaI CCCAGC 1 cut(s) 316
GsuI CTGGAG 2 cut(s) 388, 884
Hin1II CATG 2 cut(s) 323, 983
HinfI GANTC 7 cut(s) 39, 56, 134, 179, 346, 440, 892
HphI GGTGA 2 cut(s) 1028, 1122
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 715, 1141
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 9 cut(s) 97, 100, 103, 106, 109, 407, 410, 413, 767
HpyAV CCTTC 6 cut(s) 41, 249, 547, 745, 893, 1128
HpyCH4III ACNGT 1 cut(s) 820
HpyCH4IV ACGT 4 cut(s) 434, 765, 1000, 1147
HpyCH4V TGCA 7 cut(s) 550, 566, 650, 785, 998, 1051, 1160
HpyF3I CTNAG 5 cut(s) 249, 613, 843, 858, 1122
HpySE526I ACGT 4 cut(s) 434, 765, 1000, 1147
Hsp92II CATG 2 cut(s) 323, 983
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 2 cut(s) 250, 847
Lsp1109I GCAGC 4 cut(s) 31, 190, 274, 769
LweI GCATC 2 cut(s) 764, 1038
MaeI CTAG 4 cut(s) 377, 381, 483, 728
MaeII ACGT 4 cut(s) 434, 765, 1000, 1147
MaeIII GTNAC 1 cut(s) 1087
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MfeI CAATTG 2 cut(s) 746, 941
MhlI GDGCHC 1 cut(s) 859
MluCI AATT 9 cut(s) 70, 75, 340, 493, 583, 746, 809, 941, 985
MlyI GAGTC 1 cut(s) 173
MseI TTAA 2 cut(s) 582, 1016
MspA1I CMGCKG 1 cut(s) 862
MspCI CTTAAG 1 cut(s) 1015
MspR9I CCNGG 2 cut(s) 447, 1067
MunI CAATTG 2 cut(s) 746, 941
MvaI CCWGG 2 cut(s) 447, 1067
MvnI CGCG 1 cut(s) 762
NdeII GATC 1 cut(s) 499
NlaIII CATG 2 cut(s) 323, 983
NlaIV GGNNCC 1 cut(s) 705
NruI TCGCGA 1 cut(s) 762
NspV TTCGAA 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 207
PaqCI CACCTGC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 3 cut(s) 101, 408, 892
PfeI GAWTC 6 cut(s) 39, 56, 134, 346, 440, 892
PfoI TCCNGGA 1 cut(s) 445
PleI GAGTC 1 cut(s) 173
PmaCI CACGTG 1 cut(s) 1001
PmlI CACGTG 1 cut(s) 1001
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 2 cut(s) 1001, 1148
Psp6I CCWGG 2 cut(s) 445, 1065
PspCI CACGTG 1 cut(s) 1001
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 2 cut(s) 445, 1065
PspN4I GGNNCC 1 cut(s) 705
PspXI VCTCGAGB 1 cut(s) 207
PstI CTGCAG 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 862
RruI TCGCGA 1 cut(s) 762
RsaI GTAC 2 cut(s) 628, 1146
RsaNI GTAC 2 cut(s) 627, 1145
SaqAI TTAA 2 cut(s) 582, 1016
Sau3AI GATC 1 cut(s) 499
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 447, 1067
SduI GDGCHC 1 cut(s) 859
SfaNI GCATC 2 cut(s) 764, 1038
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 207, 1015
SmoI CTYRAG 2 cut(s) 207, 1015
Sse9I AATT 9 cut(s) 70, 75, 340, 493, 583, 746, 809, 941, 985
SsiI CCGC 9 cut(s) 83, 86, 89, 110, 113, 116, 119, 125, 144
SspMI CTAG 4 cut(s) 377, 381, 483, 728
StyD4I CCNGG 2 cut(s) 445, 1065
TaaI ACNGT 1 cut(s) 820
TaiI ACGT 4 cut(s) 437, 768, 1003, 1150
TaqI TCGA 8 cut(s) 37, 42, 67, 208, 257, 332, 402, 738
TasI AATT 9 cut(s) 70, 75, 340, 493, 583, 746, 809, 941, 985
TauI GCSGC 6 cut(s) 88, 91, 113, 116, 119, 146
TfiI GAWTC 6 cut(s) 39, 56, 134, 346, 440, 892
Tru1I TTAA 2 cut(s) 582, 1016
Tru9I TTAA 2 cut(s) 582, 1016
TscAI CASTG 4 cut(s) 277, 483, 598, 652
TseI GCWGC 4 cut(s) 19, 203, 287, 782
TspDTI ATGAA 3 cut(s) 206, 350, 996
TspRI CASTG 4 cut(s) 277, 483, 598, 652
Vha464I CTTAAG 1 cut(s) 1015
XagI CCTNNNNNAGG 1 cut(s) 1070
XapI RAATTY 3 cut(s) 70, 340, 985
XhoI CTCGAG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 4 cut(s) 377, 381, 483, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.