AT5G01970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010829
Physical Location & Seq
Reverse (-)
372905 .. 375154
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01970.1

Sequence Viewer

Length: 1056 bp
ATGGCGTATAGAAGAAGGCAGGGGATCGGAAAGTTTGCGACTTTCAAGGAGGAGGTTGATCGGCTTCCCCCGGAAAGCATCACCGCCGTCAAGGATAGATCACCGCCAGCTCGATCCTCCCCTGCTTTTGACCAACCCAGATCTAAGAATTTTACGACCGAGCCAAAGGGCTTGTGGGGAGTCATAGCCCAGAAAGCAAAATCTGTTATTGAAGATGATAAATCTAGTGATCGCTCTACAACAGCTTCTCAGTCCCGGTTTTCATACCTATCAGATGAAGGGTTCAAGAAAATGGACAATCCCAAGCTTCGGAGGGGGCTGGATAAGCTTACATCTTCTCTTAATCAGATCGGTGACACTTTTGAAAAAGCCTTTGAGGATGGCCGAACACTCGTTGAGAACAAAACAGCTGATATCATCCAGGAAACACGAAAACTTCAAACCAGACGAAGAGGAACTGGTGGTGAAGATGAGAATCAGAATCAATCTTATGGAGTTAGTAGCTCATGGAAGAAGTCTCCAGAGCAGCCAATGCAGTTAAATCATATAGAACATGAAACTCAACTCAAGGCATCTCGCGATGTGGCGATGGCCACTGCTGCTAAAGCTAAACTACTCCTCCGTGAGCTGAAAACTGTCAAAGCAGATCTTGCATTTGCGAAAGAGCGTTGTGCTCAGCTTGAGGAAGAGAACAAACATCTGAGAGAGAGCCACCGTGAGAAAGGAAGCAACCCTGCAGACGAAGATTTGATTCGACTCCAGCTGGAGAGCCTACTGGCAGAGAAAGCACGGTTGGCTCATGAAAATTCTGTGTATGCGAGGGAAAACCGGTTCTTGAGGGAGATAGTTGAATACCACCAGCTTACGATGCAGGACGTTGTGTACATAGACGAGGGCAGTGAAGAGGTGACACAAGTTTCCCCTTTCGTATCGACGTTGATGACTTCTTCACCCGCTGACCGTTCACAGTCTCCTCCTAGTCAAGAGATGATTAAAGAGATGCTTGTGGTTGCTGAAGAGAGCTCTGTGTGTGCAAGTGTGGTTTCAGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.57

Weight (kDa)

6.38

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30530 AT5G01970 AT5G01970
fragaria_vesca FvH4_3g41090
malus_domestica MD03G1047600.v1.1 MD11G1050100.v1.1
prunus_persica Prupe.6G038600_v2.0.a1
pyrus_communis pycom03g03750 pycom11g04060
rosa_chinensis RchiOBHm_Chr5g0073821
rosa_laevigata RLG00000036420
rosa_multiflora Rmu_sc0000470.1_g000005 Rmu_sc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00007510
rosa_rugosa Rorug05G0426800
rosa_samantha Rh5AG484000 Rh5BG504700 Rh5CG528400 Rh5DG516900
rosa_wichuraiana Rw5G044990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AciI CCGC 3 cut(s) 84, 104, 954
AclWI GGATC 2 cut(s) 32, 108
AcoI YGGCCR 2 cut(s) 382, 591
AcsI RAATTY 2 cut(s) 148, 805
AcuI CTGAAG 1 cut(s) 1035
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 1 cut(s) 309
AgeI ACCGGT 1 cut(s) 828
AgsI TTSAA 6 cut(s) 46, 212, 286, 365, 440, 851
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AloI GAACNNNNNNTCC 2 cut(s) 815, 847
Alw21I GWGCWC 2 cut(s) 676, 1025
Alw26I GTCTC 2 cut(s) 522, 975
AlwI GGATC 2 cut(s) 32, 108
AoxI GGCC 2 cut(s) 382, 591
ApeKI GCWGC 2 cut(s) 526, 599
ApoI RAATTY 2 cut(s) 148, 805
AsiGI ACCGGT 1 cut(s) 828
AsuC2I CCSGG 2 cut(s) 71, 256
AsuHPI GGTGA 6 cut(s) 73, 93, 365, 476, 919, 942
BalI TGGCCA 1 cut(s) 593
BanII GRGCYC 1 cut(s) 1025
Bbv12I GWGCWC 2 cut(s) 676, 1025
BbvI GCAGC 2 cut(s) 538, 586
BccI CCATC 2 cut(s) 374, 583
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 2 cut(s) 71, 256
BcoDI GTCTC 2 cut(s) 522, 975
BfaI CTAG 2 cut(s) 225, 978
BfmI CTRYAG 1 cut(s) 735
BglII AGATCT 2 cut(s) 140, 646
BisI GCNGC 2 cut(s) 527, 600
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 2 cut(s) 528, 601
Bme1390I CCNGG 3 cut(s) 71, 256, 422
BmrFI CCNGG 3 cut(s) 71, 256, 422
BmsI GCATC 4 cut(s) 87, 581, 858, 990
BpmI CTGGAG 3 cut(s) 504, 743, 785
Bpu1102I GCTNAGC 1 cut(s) 675
BpuEI CTTGAG 3 cut(s) 551, 701, 856
BpuMI CCSGG 2 cut(s) 71, 256
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 828
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 828
Bse1I ACTGG 2 cut(s) 463, 780
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 385, 417
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 3 cut(s) 263, 689, 692
BseNI ACTGG 2 cut(s) 463, 780
BseRI GAGGAG 3 cut(s) 65, 608, 963
BseXI GCAGC 2 cut(s) 538, 586
Bsh1236I CGCG 1 cut(s) 579
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 384, 593
BshTI ACCGGT 1 cut(s) 828
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 676, 1025
BsiSI CCGG 3 cut(s) 71, 256, 829
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 522, 975
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 2 cut(s) 384, 593
Bsp1286I GDGCHC 2 cut(s) 676, 1025
Bsp1407I TGTACA 1 cut(s) 882
Bsp143I GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
Bsp1720I GCTNAGC 1 cut(s) 675
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 3 cut(s) 84, 104, 954
BspANI GGCC 2 cut(s) 384, 593
BspCNI CTCAG 3 cut(s) 262, 688, 693
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 799
BspMAI CTGCAG 1 cut(s) 739
BspPI GGATC 2 cut(s) 32, 108
BsrFI RCCGGY 1 cut(s) 828
BsrGI TGTACA 1 cut(s) 882
BsrI ACTGG 2 cut(s) 463, 780
BssAI RCCGGY 1 cut(s) 828
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 5 cut(s) 637, 716, 792, 962, 969
Bst6I CTCTTC 4 cut(s) 445, 681, 897, 1011
BstAPI GCANNNNNTGC 2 cut(s) 532, 650
BstAUI TGTACA 1 cut(s) 882
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 144, 249, 675, 701
BstF5I GGATG 2 cut(s) 385, 417
BstFNI CGCG 1 cut(s) 579
BstKTI GATC 8 cut(s) 27, 61, 101, 116, 143, 232, 351, 649
BstMAI GTCTC 2 cut(s) 522, 975
BstMBI GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 9 cut(s) 194, 325, 532, 599, 605, 650, 785, 794, 868
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 69, 254, 420
BstSFI CTRYAG 1 cut(s) 735
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 538, 586
BstX2I RGATCY 2 cut(s) 140, 646
BstYI RGATCY 2 cut(s) 140, 646
BsuRI GGCC 2 cut(s) 384, 593
BtgZI GCGATG 2 cut(s) 594, 602
BtsCI GGATG 2 cut(s) 385, 417
BtsI GCAGTG 2 cut(s) 594, 904
BtsIMutI CAGTG 2 cut(s) 594, 904
BtuMI TCGCGA 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 828
Csp6I GTAC 1 cut(s) 883
CspAI ACCGGT 1 cut(s) 828
CviAII CATG 3 cut(s) 507, 554, 800
CviQI GTAC 1 cut(s) 883
DdeI CTNAG 4 cut(s) 144, 249, 675, 701
DpnI GATC 8 cut(s) 26, 60, 100, 115, 142, 231, 350, 648
DpnII GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
EaeI YGGCCR 2 cut(s) 382, 591
Eam1104I CTCTTC 4 cut(s) 445, 681, 897, 1011
EarI CTCTTC 4 cut(s) 445, 681, 897, 1011
Ecl136II GAGCTC 1 cut(s) 1023
Eco24I GRGCYC 1 cut(s) 1025
Eco32I GATATC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 1023
Eco57I CTGAAG 1 cut(s) 1035
EcoICRI GAGCTC 1 cut(s) 1023
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 1025
FaeI CATG 3 cut(s) 510, 557, 803
FalI AAGNNNNNCTT 4 cut(s) 633, 665, 987, 1019
FaqI GGGAC 1 cut(s) 238
FatI CATG 3 cut(s) 506, 553, 799
FauI CCCGC 1 cut(s) 961
Fnu4HI GCNGC 2 cut(s) 527, 600
FokI GGATG 2 cut(s) 392, 404
FriOI GRGCYC 1 cut(s) 1025
Fsp4HI GCNGC 2 cut(s) 527, 600
FspBI CTAG 2 cut(s) 225, 978
GluI GCNGC 2 cut(s) 527, 600
GsuI CTGGAG 3 cut(s) 504, 743, 785
HaeIII GGCC 2 cut(s) 384, 593
HapII CCGG 3 cut(s) 71, 256, 829
Hin1II CATG 3 cut(s) 510, 557, 803
HindIII AAGCTT 2 cut(s) 305, 326
HinfI GANTC 5 cut(s) 180, 475, 481, 751, 756
HpaII CCGG 3 cut(s) 71, 256, 829
HphI GGTGA 6 cut(s) 73, 93, 365, 476, 919, 942
Hpy166II GTNNAC 2 cut(s) 883, 965
Hpy188I TCNGA 6 cut(s) 29, 274, 312, 348, 480, 702
Hpy188III TCNNGA 7 cut(s) 286, 521, 578, 800, 835, 983, 1053
Hpy8I GTNNAC 2 cut(s) 883, 965
Hpy99I CGWCG 1 cut(s) 937
HpyAV CCTTC 2 cut(s) 9, 272
HpyCH4III ACNGT 5 cut(s) 637, 716, 792, 962, 969
HpyCH4IV ACGT 2 cut(s) 876, 935
HpyCH4V TGCA 5 cut(s) 535, 653, 737, 871, 1034
HpyF10VI GCNNNNNNNGC 9 cut(s) 194, 325, 532, 599, 605, 650, 785, 794, 868
HpyF3I CTNAG 4 cut(s) 144, 249, 675, 701
HpySE526I ACGT 2 cut(s) 876, 935
Hsp92II CATG 3 cut(s) 510, 557, 803
Kzo9I GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
Lsp1109I GCAGC 2 cut(s) 538, 586
LweI GCATC 4 cut(s) 87, 581, 858, 990
MaeI CTAG 2 cut(s) 225, 978
MaeII ACGT 2 cut(s) 876, 935
MaeIII GTNAC 2 cut(s) 353, 907
MalI GATC 8 cut(s) 26, 60, 100, 115, 142, 231, 350, 648
MboI GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
MflI RGATCY 2 cut(s) 140, 646
MhlI GDGCHC 2 cut(s) 676, 1025
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 2 cut(s) 148, 805
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 2 cut(s) 189, 750
Mox20I TGGCCA 1 cut(s) 593
MscI TGGCCA 1 cut(s) 593
MseI TTAA 3 cut(s) 342, 539, 993
Msp20I TGGCCA 1 cut(s) 593
MspA1I CMGCKG 3 cut(s) 410, 763, 956
MspI CCGG 3 cut(s) 71, 256, 829
MspR9I CCNGG 3 cut(s) 71, 256, 422
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 9 cut(s) 194, 325, 532, 599, 605, 650, 785, 794, 868
NciI CCSGG 2 cut(s) 71, 256
NdeII GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
NlaIII CATG 3 cut(s) 510, 557, 803
NmuCI GTSAC 2 cut(s) 353, 907
NruI TCGCGA 1 cut(s) 579
PagI TCATGA 1 cut(s) 799
PfeI GAWTC 3 cut(s) 475, 481, 751
PfoI TCCNGGA 1 cut(s) 420
PinAI ACCGGT 1 cut(s) 828
PkrI GCNGC 2 cut(s) 528, 601
PleI GAGTC 2 cut(s) 188, 750
PpsI GAGTC 2 cut(s) 188, 750
Psp124BI GAGCTC 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PstI CTGCAG 1 cut(s) 739
PsuI RGATCY 2 cut(s) 140, 646
PvuII CAGCTG 2 cut(s) 410, 763
RruI TCGCGA 1 cut(s) 579
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
SacI GAGCTC 1 cut(s) 1025
SaqAI TTAA 3 cut(s) 342, 539, 993
SatI GCNGC 2 cut(s) 527, 600
Sau3AI GATC 8 cut(s) 24, 58, 98, 113, 140, 229, 348, 646
SchI GAGTC 2 cut(s) 189, 750
ScrFI CCNGG 3 cut(s) 71, 256, 422
SduI GDGCHC 2 cut(s) 676, 1025
SfaNI GCATC 4 cut(s) 87, 581, 858, 990
SfcI CTRYAG 1 cut(s) 735
SmlI CTYRAG 3 cut(s) 566, 680, 835
SmoI CTYRAG 3 cut(s) 566, 680, 835
Sse9I AATT 2 cut(s) 148, 805
SsiI CCGC 3 cut(s) 84, 104, 954
SspMI CTAG 2 cut(s) 225, 978
SstI GAGCTC 1 cut(s) 1025
StyD4I CCNGG 3 cut(s) 69, 254, 420
TaaI ACNGT 5 cut(s) 637, 716, 792, 962, 969
TaiI ACGT 2 cut(s) 879, 938
TaqI TCGA 3 cut(s) 112, 754, 932
TaqII GACCGA 1 cut(s) 173
TasI AATT 2 cut(s) 148, 805
TatI WGTACW 1 cut(s) 882
TfiI GAWTC 3 cut(s) 475, 481, 751
Tru1I TTAA 3 cut(s) 342, 539, 993
Tru9I TTAA 3 cut(s) 342, 539, 993
TscAI CASTG 2 cut(s) 601, 904
TseFI GTSAC 2 cut(s) 353, 907
TseI GCWGC 2 cut(s) 526, 599
Tsp45I GTSAC 2 cut(s) 353, 907
TspDTI ATGAA 4 cut(s) 252, 291, 570, 816
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 2 cut(s) 601, 904
XapI RAATTY 2 cut(s) 148, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XspI CTAG 2 cut(s) 225, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.