Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008930

Physical Location & Seq

Genomic Coordinates Reverse (-)

13220478 .. 13222642

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGACTTAAAGGATATAGCGTCGGAGAAGGAGGAGGAGAGATAGTTGAGGTTCAAGGCGGTCACATAATCCGAGCCACTGGACGCAAAGACCGTCATAGCAAAGTGTTCACATCAAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCACACGGCGATTCAATTCTACGATGTGCAAGACCGGTTAGGTTATGACCGGCCTAGCAAAGCCGTTGATTGGCTCATCAAGAAAGCCAAAACCGCTATTGATAAGCTTGAACTCGGGGAGACTACTACTACTACTACTCGTCAAGAACCGGTGAATACTAAACCGGAATCTCCCACTTTGGTTTTCCAAAGAGAGAACAATGACCAAACGCAGTTCGTGGCGGCCAATCTTGATCCTGAAGACGCAATGAAAACGTTTTTCCCGGCGACGACAACAACAAACGGTGGTGGTGGTACAAACATCAATTTCCAAAACTACCCTCATCAGGATGACAACAACATGGTCTCAAGAACAACAACACCACCACCAAACCTTAGCCAAGATCTTGGTCTCTCTCTTCACCCATTTCAAGGGAACAACAACACAGTCGTAGTTCCCGAGACCAACAATTTCACCACGACTCATTTCGACACGTTCGGGAGAATCTCTGGATGGAATCATCACGACTTAACTATGACGTCATCATCCTCATCAGAACATCAACAACAAGAACAAGAAGAAAGGAGTAATGGTGGTTTCATGGTGAATCATCATCCTCACCATCATCATCATCAACCGTCGATGATGACATTGCTTAATAGTCAGCAACAACAAGTGTTTCTTGGTGGCCAACAACAACAACAACAAAGGGGTACCCTTCAGTCCAGTTTATTCCCTCATTCGTTTCGTTCTTGGGATCATCATCAAACGACGTCGGATCATCATCATCATCAGAATCAAGCTTCTTCGATGTTTGCTTCATCATCACAGTATGGTTCTCATGGGATGATGATGATGCAAGGCCTTAGTTTCCCCAACACTACAAGACTACTCCACGGAGAAGAAGCTACTCAACCAAACTCTTCTTCTTCTCCTCCAAACTCACACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0045962 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

361

Amino Acids

40.38

Weight (kDa)

6.59

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	28 - 117	1.3e-31	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31070
fragaria_vesca	FvH4_6g27030
malus_domestica	MD09G1232700.v1.1 MD17G1233500.v1.1
prunus_persica	Prupe.3G124900_v2.0.a1 Prupe.3G124900_v2.0.a1 Prupe.3G124900_v2.0.a1
pyrus_communis	pycom09g15910 pycom17g23660
rosa_chinensis	RchiOBHm_Chr2g0128901
rosa_laevigata	RLG00000019040 RLG00000027864
rosa_multiflora	Rmu_sc0001643.1_g000009
rosa_roxburghii	Rroxscaffold_2G00115090
rosa_rugosa	Rorug02G0282400 Rorug02G0282500 Rorug02G0282600
rosa_samantha	Rh2AG335000 Rh2BG343100 Rh2CG321900 Rh2DG359500
rosa_wichuraiana	Rw0G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	674, 908
Acc65I	GGTACC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	845
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	60, 246, 374
AclI	AACGTT	1 cut(s)	407
AclWI	GGATC	3 cut(s)	380, 897, 918
AcoI	YGGCCR	2 cut(s)	375, 820
AcuI	CTGAAG	2 cut(s)	411, 836
AcvI	CACGTG	1 cut(s)	128
AcyI	GRCGYC	2 cut(s)	671, 905
AfaI	GTAC	2 cut(s)	448, 847
AfiI	CCNNNNNNNGG	3 cut(s)	222, 478, 563
AflIII	ACRYGT	1 cut(s)	624
AgeI	ACCGGT	2 cut(s)	186, 301
AgsI	TTSAA	4 cut(s)	56, 167, 263, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	1042, 1074
AluBI	AGCT	4 cut(s)	152, 259, 935, 1040
AluI	AGCT	4 cut(s)	152, 259, 935, 1040
Alw26I	GTCTC	5 cut(s)	136, 266, 502, 548, 587
AlwI	GGATC	3 cut(s)	380, 897, 918
Ama87I	CYCGRG	2 cut(s)	266, 590
AoxI	GGCC	4 cut(s)	203, 375, 820, 994
AsiGI	ACCGGT	2 cut(s)	186, 301
Asp718I	GGTACC	1 cut(s)	845
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	5 cut(s)	316, 545, 598, 743, 748
AvaI	CYCGRG	2 cut(s)	266, 590
AvaII	GGWCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	822
BanI	GGYRCC	1 cut(s)	845
BbrPI	CACGTG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	399
BccI	CCATC	2 cut(s)	639, 762
BceAI	ACGGC	2 cut(s)	174, 200
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	5 cut(s)	136, 266, 502, 548, 587
BfaI	CTAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	2 cut(s)	266, 590
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	123, 847
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	978
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	128
BsaBI	GATNNNNATC	2 cut(s)	894, 915
BsaHI	GRCGYC	2 cut(s)	671, 905
BsaI	GGTCTC	3 cut(s)	502, 548, 587
BsaJI	CCNNGG	1 cut(s)	1027
BsaWI	WCCGGW	3 cut(s)	186, 301, 316
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 709, 739
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 478, 563
Bse118I	RCCGGY	4 cut(s)	132, 186, 201, 301
Bse1I	ACTGG	2 cut(s)	85, 858
Bse3DI	GCAATG	2 cut(s)	405, 782
Bse8I	GATNNNNATC	2 cut(s)	894, 915
BseDI	CCNNGG	1 cut(s)	1027
BseGI	GGATG	5 cut(s)	487, 650, 677, 745, 984
BseJI	GATNNNNATC	2 cut(s)	894, 915
BseLI	CCNNNNNNNGG	3 cut(s)	222, 478, 563
BseMI	GCAATG	2 cut(s)	405, 782
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	85, 858
BseRI	GAGGAG	3 cut(s)	48, 51, 1056
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	205, 377, 822, 996
BshNI	GGYRCC	1 cut(s)	845
BshTI	ACCGGT	2 cut(s)	186, 301
BsiHKCI	CYCGRG	2 cut(s)	266, 590
BsiSI	CCGG	6 cut(s)	133, 187, 202, 302, 317, 416
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	222, 478, 563
BsmAI	GTCTC	5 cut(s)	136, 266, 502, 548, 587
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	205, 377, 822, 996
Bso31I	GGTCTC	3 cut(s)	502, 548, 587
BsoBI	CYCGRG	2 cut(s)	266, 590
Bsp143I	GATC	4 cut(s)	385, 535, 889, 910
BspACI	CCGC	3 cut(s)	60, 246, 374
BspANI	GGCC	4 cut(s)	205, 377, 822, 996
BspCNI	CTCAG	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	123, 847
BspPI	GGATC	3 cut(s)	380, 897, 918
BspT107I	GGYRCC	1 cut(s)	845
BspTNI	GGTCTC	3 cut(s)	502, 548, 587
BsrDI	GCAATG	2 cut(s)	405, 782
BsrFI	RCCGGY	4 cut(s)	132, 186, 201, 301
BsrI	ACTGG	2 cut(s)	85, 858
BssAI	RCCGGY	4 cut(s)	132, 186, 201, 301
BssECI	CCNNGG	1 cut(s)	1027
BssMI	GATC	4 cut(s)	385, 535, 889, 910
BssNI	GRCGYC	2 cut(s)	671, 905
Bst4CI	ACNGT	5 cut(s)	95, 437, 580, 771, 963
Bst6I	CTCTTC	2 cut(s)	555, 1060
BstACI	GRCGYC	2 cut(s)	671, 905
BstBAI	YACGTR	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	148, 527, 998
BstDSI	CCRYGG	1 cut(s)	1027
BstF5I	GGATG	5 cut(s)	487, 650, 677, 745, 984
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	388, 538, 892, 913
BstMAI	GTCTC	5 cut(s)	136, 266, 502, 548, 587
BstMBI	GATC	4 cut(s)	385, 535, 889, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 245
BstSCI	CCNGG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	205, 377, 822, 996
BtgI	CCRYGG	1 cut(s)	1027
BtsCI	GGATG	5 cut(s)	487, 650, 677, 745, 984
BtsIMutI	CAGTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	4 cut(s)	132, 186, 201, 301
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	3 cut(s)	10, 93, 404
Csp6I	GTAC	2 cut(s)	447, 846
CspAI	ACCGGT	2 cut(s)	186, 301
CviAII	CATG	3 cut(s)	493, 733, 974
CviQI	GTAC	2 cut(s)	447, 846
DdeI	CTNAG	3 cut(s)	148, 527, 998
DpnI	GATC	4 cut(s)	387, 537, 891, 912
DpnII	GATC	4 cut(s)	385, 535, 889, 910
EaeI	YGGCCR	2 cut(s)	375, 820
Eam1104I	CTCTTC	2 cut(s)	555, 1060
EarI	CTCTTC	2 cut(s)	555, 1060
Eco147I	AGGCCT	1 cut(s)	996
Eco31I	GGTCTC	3 cut(s)	502, 548, 587
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	411, 836
Eco72I	CACGTG	1 cut(s)	128
Eco88I	CYCGRG	2 cut(s)	266, 590
FaeI	CATG	3 cut(s)	496, 736, 977
FaiI	YATR	9 cut(s)	18, 68, 99, 198, 494, 668, 734, 966, 975
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	492, 732, 973
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	5 cut(s)	494, 657, 664, 732, 991
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	4 cut(s)	205, 377, 822, 996
HapII	CCGG	6 cut(s)	133, 187, 202, 302, 317, 416
HgaI	GACGC	3 cut(s)	10, 93, 404
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	2 cut(s)	671, 905
Hin1II	CATG	3 cut(s)	496, 736, 977
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	257, 933
HinfI	GANTC	8 cut(s)	144, 163, 320, 613, 636, 649, 739, 928
HpaII	CCGG	6 cut(s)	133, 187, 202, 302, 317, 416
HphI	GGTGA	5 cut(s)	316, 545, 598, 743, 748
Hpy166II	GTNNAC	2 cut(s)	111, 125
Hpy188I	TCNGA	5 cut(s)	26, 74, 688, 910, 927
Hpy8I	GTNNAC	2 cut(s)	111, 125
Hpy99I	CGWCG	5 cut(s)	26, 424, 775, 907, 910
HpyAV	CCTTC	2 cut(s)	23, 860
HpyCH4III	ACNGT	5 cut(s)	95, 437, 580, 771, 963
HpyCH4IV	ACGT	5 cut(s)	127, 407, 626, 671, 905
HpyCH4V	TGCA	2 cut(s)	181, 991
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 245
HpyF3I	CTNAG	3 cut(s)	148, 527, 998
HpySE526I	ACGT	5 cut(s)	127, 407, 626, 671, 905
Hsp92I	GRCGYC	2 cut(s)	671, 905
Hsp92II	CATG	3 cut(s)	496, 736, 977
HspAI	GCGC	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	849
Kzo9I	GATC	4 cut(s)	385, 535, 889, 910
LweI	GCATC	1 cut(s)	978
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	5 cut(s)	127, 407, 626, 671, 905
MaeIII	GTNAC	2 cut(s)	62, 128
MalI	GATC	4 cut(s)	387, 537, 891, 912
MboI	GATC	4 cut(s)	385, 535, 889, 910
MboII	GAAGA	8 cut(s)	404, 542, 722, 930, 1046, 1047, 1050, 1053
MflI	RGATCY	1 cut(s)	535
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	3 cut(s)	167, 457, 601
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	2 cut(s)	138, 607
MmeI	TCCRAC	2 cut(s)	4, 888
MnlI	CCTC	8 cut(s)	26, 29, 43, 483, 691, 759, 879, 1077
Mox20I	TGGCCA	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	3 cut(s)	9, 662, 789
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	822
MspI	CCGG	6 cut(s)	133, 187, 202, 302, 317, 416
MspR9I	CCNGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	158, 245
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	385, 535, 889, 910
NlaIII	CATG	3 cut(s)	496, 736, 977
NlaIV	GGNNCC	2 cut(s)	123, 847
NmuCI	GTSAC	2 cut(s)	62, 128
PceI	AGGCCT	1 cut(s)	996
PcsI	WCGNNNNNNNCGW	2 cut(s)	91, 588
PfeI	GAWTC	6 cut(s)	163, 320, 636, 649, 739, 928
PinAI	ACCGGT	2 cut(s)	186, 301
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	138, 607
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	2 cut(s)	138, 607
Ppu21I	YACGTR	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	407
PspCI	CACGTG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	123, 847
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	2 cut(s)	448, 847
RsaNI	GTAC	2 cut(s)	447, 846
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	9, 662, 789
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	385, 535, 889, 910
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	2 cut(s)	138, 607
ScrFI	CCNGG	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	978
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	3 cut(s)	167, 457, 601
SseBI	AGGCCT	1 cut(s)	996
SsiI	CCGC	3 cut(s)	60, 246, 374
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	996
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	5 cut(s)	95, 437, 580, 771, 963
TaiI	ACGT	5 cut(s)	130, 410, 629, 674, 908
TaqI	TCGA	3 cut(s)	621, 773, 941
TasI	AATT	3 cut(s)	167, 457, 601
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	6 cut(s)	163, 320, 636, 649, 739, 928
Tru1I	TTAA	3 cut(s)	9, 662, 789
Tru9I	TTAA	3 cut(s)	9, 662, 789
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	62, 128
Tsp45I	GTSAC	2 cut(s)	62, 128
TspDTI	ATGAA	3 cut(s)	416, 721, 942
TspGWI	ACGGA	1 cut(s)	1044
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	122
XspI	CTAG	1 cut(s)	207
ZraI	GACGTC	2 cut(s)	672, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.