Rh2CG321900
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008930
Physical Location & Seq
Reverse (-)
41358326 .. 41365833
7508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG321900.1

Sequence Viewer

Length: 1095 bp
ATGGGCATGAAGAGCGTCGGAGGAGAGATTGTGCAAGTCCAAGGAGGTCACATTGTTCGATCCACCGGCCGGAAAGACCGCCACAGCAAGGTTGTAACCGCAAAAGGCCCCAGGGACCGCCGCGTGCGGTTGTCAGCCCACACCGCCATCCAATTCTACGATGTTCAAGACCGGCTGGGCTACGACCGGCCCAGTAAAGCCGTGGATTGGCTCATCAAGAAGGCGAAAACCGCCATTGACAAGCTTGCAGAGCTTCCACCATGGCACCCAACTGGTGTTGCTGCTAATGCTACACAAGGAGAAGTTCCAAATGGAGCTGGAACCAGTGATATGGTGATCTCAGCTGAGCAATCTGAGTCATCTGGCTACAATTTCCAGCTGCAGAGACAAATTGGGGACAACACAGATCACAATGAATCAAGCTTCATCCCTCAATCTCTTGATTCTGACACCATAGCTGATACCATGAAGTCTTTCTTCCCTACAAGCTCAGCTGCCTCAACCATCAATTTCCAGAGCTACCCATCTGATATAATCTCAAGAACAACTAATCTGAACCCCAACCAAGACCTTGGCCTCTCTCTCCACTCCTTCCAAGACCAAGGCCTGATTCACCACACCCAGCAATCTCATCAGGACACCACTCACCACAACGATCAGATTCAAACCCTCTTCGCAGTGCCGGCCACGGCCGGGTTCGACTCCTCTGCTTATCAGAGGATGGTGGCATGGAGCAGCGACAGCAGCCATGAAAACAGAGGGTTTGTCTTCAACAACATGCCGGCGTTGCCGCATCAGCAAGCACTGATGGGGCAGCAGCAGAGCTCGTCTGCAGCTCCCACTTTTGCTCAGAGGGGTACCCTTCAGTCCAGTTTTACACCATCGATTCGTTCTTGGAGCGATGAAATTCAAATGGCTTCACAGAGAACGCAGCAGCACCCAGTTCATCAGTCTTCCATTTTCGGCACAAGGTTTGCCTCTGATGTCCTCCCTGCGTTCTGCACTCCGACGCGTATTCACGGGGACGATGCAGACAACAGCGTCGTTTCGGATCGCCCATCTTCTACTTCCTCTCCCAACTCCAACCACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCP

Protein Analysis

364

Amino Acids

39.85

Weight (kDa)

6.4

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 129 1.3e-30 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1040
Acc65I GGTACC 1 cut(s) 857
AccB1I GGYRCC 2 cut(s) 264, 857
AccII CGCG 2 cut(s) 123, 1012
AciI CCGC 8 cut(s) 79, 99, 118, 121, 127, 144, 231, 791
AclWI GGATC 2 cut(s) 54, 1059
AcoI YGGCCR 3 cut(s) 67, 684, 690
AcsI RAATTY 1 cut(s) 906
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 1 cut(s) 859
AfiI CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
AflIII ACRYGT 1 cut(s) 1010
AgsI TTSAA 4 cut(s) 167, 665, 772, 911
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
Alw21I GWGCWC 1 cut(s) 827
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 2 cut(s) 54, 1059
AoxI GGCC 7 cut(s) 67, 106, 188, 574, 604, 684, 690
ApoI RAATTY 1 cut(s) 906
Asp700I GAANNNNTTC 1 cut(s) 473
Asp718I GGTACC 1 cut(s) 857
AspS9I GGNCC 3 cut(s) 107, 115, 189
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 3 cut(s) 346, 605, 638
AvaII GGWCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 264, 857
BanII GRGCYC 1 cut(s) 827
BbsI GAAGAC 2 cut(s) 760, 945
Bbv12I GWGCWC 1 cut(s) 827
BccI CCATC 7 cut(s) 155, 512, 532, 715, 802, 889, 1066
BceAI ACGGC 2 cut(s) 185, 705
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 1 cut(s) 379
BfmI CTRYAG 2 cut(s) 380, 831
BlpI GCTNAGC 2 cut(s) 345, 490
Bme1390I CCNGG 2 cut(s) 112, 694
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 107, 115, 189
BmiI GGNNCC 5 cut(s) 109, 116, 266, 322, 859
BmrFI CCNGG 2 cut(s) 112, 694
BmrI ACTGGG 2 cut(s) 186, 935
BmsI GCATC 2 cut(s) 802, 1018
BmuI ACTGGG 2 cut(s) 186, 935
BpiI GAAGAC 2 cut(s) 760, 945
Bpu1102I GCTNAGC 2 cut(s) 345, 490
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 1 cut(s) 694
Bsa29I ATCGAT 1 cut(s) 884
BsaJI CCNNGG 8 cut(s) 40, 110, 111, 201, 260, 571, 601, 687
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 1057, 1087
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
Bse118I RCCGGY 5 cut(s) 65, 171, 186, 682, 781
Bse1I ACTGG 5 cut(s) 192, 277, 324, 870, 941
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 884
BseDI CCNNGG 8 cut(s) 40, 110, 111, 201, 260, 571, 601, 687
BseGI GGATG 3 cut(s) 147, 426, 726
BseLI CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
BseMII CTCAG 5 cut(s) 336, 345, 354, 504, 863
BseNI ACTGG 5 cut(s) 192, 277, 324, 870, 941
BseRI GAGGAG 2 cut(s) 36, 694
BseX3I CGGCCG 2 cut(s) 67, 690
BseYI CCCAGC 2 cut(s) 175, 621
BsgI GTGCAG 1 cut(s) 985
Bsh1236I CGCG 2 cut(s) 123, 1012
Bsh1285I CGRYCG 3 cut(s) 70, 187, 693
BshFI GGCC 7 cut(s) 69, 108, 190, 576, 606, 686, 692
BshNI GGYRCC 2 cut(s) 264, 857
BshVI ATCGAT 1 cut(s) 884
BsiEI CGRYCG 3 cut(s) 70, 187, 693
BsiHKAI GWGCWC 1 cut(s) 827
BsiSI CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
BslFI GGGAC 3 cut(s) 128, 410, 1037
BslI CCNNNNNNNGG 4 cut(s) 69, 88, 207, 693
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 3 cut(s) 128, 410, 1037
BsnI GGCC 7 cut(s) 69, 108, 190, 576, 606, 686, 692
Bsp1286I GDGCHC 1 cut(s) 827
Bsp143I GATC 5 cut(s) 59, 336, 406, 655, 1051
Bsp1720I GCTNAGC 2 cut(s) 345, 490
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 8 cut(s) 79, 99, 118, 121, 127, 144, 231, 791
BspANI GGCC 7 cut(s) 69, 108, 190, 576, 606, 686, 692
BspCNI CTCAG 5 cut(s) 337, 346, 353, 503, 862
BspDI ATCGAT 1 cut(s) 884
BspFNI CGCG 2 cut(s) 123, 1012
BspLI GGNNCC 5 cut(s) 109, 116, 266, 322, 859
BspMAI CTGCAG 2 cut(s) 384, 835
BspPI GGATC 2 cut(s) 54, 1059
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 2 cut(s) 264, 857
BsrFI RCCGGY 5 cut(s) 65, 171, 186, 682, 781
BsrI ACTGG 5 cut(s) 192, 277, 324, 870, 941
BssAI RCCGGY 5 cut(s) 65, 171, 186, 682, 781
BssECI CCNNGG 8 cut(s) 40, 110, 111, 201, 260, 571, 601, 687
BssMI GATC 5 cut(s) 59, 336, 406, 655, 1051
BssT1I CCWWGG 4 cut(s) 40, 260, 571, 601
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 5, 677
BstC8I GCNNGC 5 cut(s) 125, 246, 684, 783, 801
BstDEI CTNAG 5 cut(s) 340, 345, 354, 490, 849
BstDSI CCRYGG 3 cut(s) 201, 260, 687
BstF5I GGATG 3 cut(s) 147, 426, 726
BstFNI CGCG 2 cut(s) 123, 1012
BstKTI GATC 5 cut(s) 62, 339, 409, 658, 1054
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 5 cut(s) 59, 336, 406, 655, 1051
BstMCI CGRYCG 3 cut(s) 70, 187, 693
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 2 cut(s) 110, 692
BstSFI CTRYAG 2 cut(s) 380, 831
BstUI CGCG 2 cut(s) 123, 1012
BstV2I GAAGAC 2 cut(s) 760, 945
BstXI CCANNNNNNTGG 2 cut(s) 331, 572
BstZI CGGCCG 2 cut(s) 67, 690
Bsu15I ATCGAT 1 cut(s) 884
BsuRI GGCC 7 cut(s) 69, 108, 190, 576, 606, 686, 692
BsuTUI ATCGAT 1 cut(s) 884
BtgI CCRYGG 3 cut(s) 201, 260, 687
BtgZI GCGATG 1 cut(s) 915
BtsCI GGATG 3 cut(s) 147, 426, 726
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 3 cut(s) 331, 684, 803
Cac8I GCNNGC 5 cut(s) 125, 246, 684, 783, 801
Cfr10I RCCGGY 5 cut(s) 65, 171, 186, 682, 781
Cfr13I GGNCC 3 cut(s) 107, 115, 189
ClaI ATCGAT 1 cut(s) 884
CseI GACGC 3 cut(s) 4, 1018, 1030
Csp6I GTAC 1 cut(s) 858
CviAII CATG 6 cut(s) 7, 261, 466, 729, 749, 778
CviQI GTAC 1 cut(s) 858
DdeI CTNAG 5 cut(s) 340, 345, 354, 490, 849
DpnI GATC 5 cut(s) 61, 338, 408, 657, 1053
DpnII GATC 5 cut(s) 59, 336, 406, 655, 1051
DrdI GACNNNNNNGTC 1 cut(s) 1040
DseDI GACNNNNNNGTC 1 cut(s) 1040
EaeI YGGCCR 3 cut(s) 67, 684, 690
EagI CGGCCG 2 cut(s) 67, 690
Eam1104I CTCTTC 2 cut(s) 5, 677
EarI CTCTTC 2 cut(s) 5, 677
Ecl136II GAGCTC 1 cut(s) 825
EclXI CGGCCG 2 cut(s) 67, 690
Eco130I CCWWGG 4 cut(s) 40, 260, 571, 601
Eco147I AGGCCT 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 827
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 2 cut(s) 67, 690
Eco53kI GAGCTC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 4 cut(s) 40, 260, 571, 601
EcoT38I GRGCYC 1 cut(s) 827
ErhI CCWWGG 4 cut(s) 40, 260, 571, 601
FaeI CATG 6 cut(s) 10, 264, 469, 732, 752, 781
FaiI YATR 9 cut(s) 8, 262, 332, 455, 467, 533, 730, 750, 779
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 3 cut(s) 128, 410, 1037
FatI CATG 6 cut(s) 6, 260, 465, 728, 748, 777
FokI GGATG 3 cut(s) 134, 413, 733
FriOI GRGCYC 1 cut(s) 827
GsaI CCCAGC 2 cut(s) 179, 625
HaeIII GGCC 7 cut(s) 69, 108, 190, 576, 606, 686, 692
HapII CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
HgaI GACGC 3 cut(s) 4, 1018, 1030
Hin1II CATG 6 cut(s) 10, 264, 469, 732, 752, 781
HindIII AAGCTT 2 cut(s) 242, 421
HinfI GANTC 7 cut(s) 356, 416, 443, 610, 661, 701, 886
HpaII CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
HphI GGTGA 3 cut(s) 346, 605, 638
Hpy188III TCNNGA 6 cut(s) 167, 217, 440, 514, 540, 635
Hpy99I CGWCG 3 cut(s) 20, 1012, 1046
HpyAV CCTTC 3 cut(s) 214, 601, 872
HpyCH4V TGCA 6 cut(s) 34, 248, 382, 833, 1002, 1031
HpyF3I CTNAG 5 cut(s) 340, 345, 354, 490, 849
Hsp92II CATG 6 cut(s) 10, 264, 469, 732, 752, 781
KpnI GGTACC 1 cut(s) 861
KroI GCCGGC 2 cut(s) 682, 781
KroNI GCCGGC 2 cut(s) 684, 783
Kzo9I GATC 5 cut(s) 59, 336, 406, 655, 1051
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 4 cut(s) 314, 732, 841, 897
LweI GCATC 2 cut(s) 802, 1018
MaeIII GTNAC 2 cut(s) 47, 94
MalI GATC 5 cut(s) 61, 338, 408, 657, 1053
MboI GATC 5 cut(s) 59, 336, 406, 655, 1051
MboII GAAGA 6 cut(s) 22, 469, 664, 760, 945, 1053
MhlI GDGCHC 1 cut(s) 827
MluCI AATT 5 cut(s) 152, 370, 390, 508, 906
MluI ACGCGT 1 cut(s) 1010
MlyI GAGTC 2 cut(s) 365, 695
MmeI TCCRAC 1 cut(s) 1031
MroNI GCCGGC 2 cut(s) 682, 781
MroXI GAANNNNTTC 1 cut(s) 473
MspA1I CMGCKG 3 cut(s) 344, 379, 494
MspI CCGG 7 cut(s) 66, 70, 172, 187, 683, 693, 782
MspR9I CCNGG 2 cut(s) 112, 694
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 2 cut(s) 123, 1012
NaeI GCCGGC 2 cut(s) 684, 783
NciI CCSGG 1 cut(s) 694
NcoI CCATGG 1 cut(s) 260
NdeII GATC 5 cut(s) 59, 336, 406, 655, 1051
NgoMIV GCCGGC 2 cut(s) 682, 781
NlaIII CATG 6 cut(s) 10, 264, 469, 732, 752, 781
NlaIV GGNNCC 5 cut(s) 109, 116, 266, 322, 859
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 781
PasI CCCWGGG 1 cut(s) 111
PceI AGGCCT 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 5
PdiI GCCGGC 2 cut(s) 684, 783
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 5 cut(s) 416, 443, 610, 661, 886
PleI GAGTC 2 cut(s) 364, 695
PpsI GAGTC 2 cut(s) 364, 695
Psp124BI GAGCTC 1 cut(s) 827
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 2 cut(s) 175, 621
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 5 cut(s) 109, 116, 266, 322, 859
PspPI GGNCC 3 cut(s) 107, 115, 189
PstI CTGCAG 2 cut(s) 384, 835
PvuII CAGCTG 3 cut(s) 344, 379, 494
RsaI GTAC 1 cut(s) 859
RsaNI GTAC 1 cut(s) 858
SacI GAGCTC 1 cut(s) 827
SapI GCTCTTC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 59, 336, 406, 655, 1051
Sau96I GGNCC 3 cut(s) 107, 115, 189
SchI GAGTC 2 cut(s) 365, 695
ScrFI CCNGG 2 cut(s) 112, 694
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 2 cut(s) 802, 1018
SfcI CTRYAG 2 cut(s) 380, 831
SinI GGWCC 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 5 cut(s) 152, 370, 390, 508, 906
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 8 cut(s) 79, 99, 118, 121, 127, 144, 231, 791
SstI GAGCTC 1 cut(s) 827
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 110, 692
StyI CCWWGG 4 cut(s) 40, 260, 571, 601
TaqI TCGA 3 cut(s) 58, 699, 884
TasI AATT 5 cut(s) 152, 370, 390, 508, 906
TauI GCSGC 2 cut(s) 123, 793
TfiI GAWTC 5 cut(s) 416, 443, 610, 661, 886
TscAI CASTG 3 cut(s) 331, 684, 810
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 7 cut(s) 23, 415, 429, 482, 765, 918, 935
TspRI CASTG 3 cut(s) 331, 684, 810
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 906
XceI RCATGY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.